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#! /usr/bin/env python
# This file is part of khmer, https://github.com/dib-lab/khmer/, and is
# Copyright (C) 2015, The Regents of the University of California.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above
# copyright notice, this list of conditions and the following
# disclaimer in the documentation and/or other materials provided
# with the distribution.
#
# * Neither the name of the Michigan State University nor the names
# of its contributors may be used to endorse or promote products
# derived from this software without specific prior written
# permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
# HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# Contact: khmer-project@idyll.org
from __future__ import print_function
from __future__ import unicode_literals
from nameparser import HumanName
import codecs
import textwrap
import sys
import codecs
sys.stdout = codecs.getwriter('utf8')(sys.stdout)
authors = []
with codecs.open('authors.csv', 'r', encoding='utf-8') as namefile:
for line in namefile:
name, address = line.split(',')
authors.append((HumanName(name), address))
authors = sorted(authors, key=lambda author: author[0].last)
authors.insert(0, (HumanName("Michael R. Crusoe"), "crusoe@ucdavis.edu"))
authors.append((HumanName("C. Titus Brown"), "titus@idyll.org"))
# print(authors)
bibtex = u' author = \"'
for tup in authors:
name = tup[0]
name.string_format = "{last}, {first} {middle} and"
bibtex += unicode(name) + " "
bibtex = bibtex[:-5] + '"' # remove last 'and' and close the quote
print(u' @article{khmer2015,')
for line in textwrap.wrap(unicode(bibtex), 77):
print(' ' + line)
print(
''' title = "The khmer software package: enabling efficient nucleotide
sequence analysis",
year = "2015",
month = "08",
publisher = "F1000",
url = "http://dx.doi.org/10.12688/f1000research.6924.1"
}''')
doclist = u':Authors: '
for tup in authors:
name = tup[0]
name.string_format = "{first} {middle} {last}"
doclist += unicode(name) + ", "
doclist = doclist[:-2]
for line in textwrap.wrap(unicode(doclist), 71):
print(' ' + line)
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