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#!/usr/bin/make -f
export DH_VERBOSE=1
export PYBUILD_NAME=khmer
export PYBUILD_INSTALL_ARGS='--install-scripts=/usr/lib/khmer/bin'
export PYBUILD_DESTDIR_python3=debian/khmer
export DEB_BUILD_MAINT_OPTIONS=hardening=+bindnow
export DPKG_EXPORT_BUILDFLAGS = 1
include /usr/share/dpkg/buildflags.mk
# Force C++ library build to use Debian zlib1g-dev/libbz2-dev
export USE_SYSTEM_ZLIB=true
export USE_SYSTEM_LIBBZ2=true
export HOME=$(shell echo $$PWD"/fakehome")
%:
dh $@ --with python3,sphinxdoc --buildsystem=pybuild
override_dh_auto_build:
dh_auto_build
ln -sf "`pwd`"/.pybuild/pythonX.Y_*/build/khmer/*.so khmer && \
./setup.py develop --user && ./setup.py build_sphinx
asciidoctor --backend manpage -a reproducible debian/khmer.1.adoc
cd src/oxli && $(MAKE) clean all
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_install
PYBUILD_SYSTEM=custom \
PYBUILD_TEST_ARGS="cd {dir}; export PATH={destdir}/usr/lib/khmer/bin:$$PATH ; \
cd {build_dir}; export PYTHONPATH=$$(pwd); {interpreter} -m pytest \
-m 'not known_failing and not jenkins and not huge and not noroot'\
-q" dh_auto_test
endif
override_dh_auto_clean:
dh_auto_clean || /bin/true
cd src/oxli && $(MAKE) clean
rm -rf __pycache__ .eggs
override_dh_install:
cd src/oxli && $(MAKE) PREFIX=../debian/tmp install
dh_install
find debian/khmer -name .gitignore -delete
override_dh_sphinxdoc:
dh_sphinxdoc
rdfind -makesymlinks true -followsymlinks true\
/usr/lib/python3/dist-packages/guzzle_sphinx_theme \
$(shell find debian/khmer-common | grep -i -v citation)
if [ -f debian/khmer-common/usr/share/doc/khmer-common/html/_sources/citations.rst.txt ]; then \
rm debian/khmer-common/usr/share/doc/khmer-common/html/_sources/citations.rst.txt && \
cd debian/khmer-common/usr/share/doc/khmer-common/html/_sources/ && \
ln -s ../../CITATION citations.rst.txt; fi
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