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#!/usr/bin/env python
# -*- coding: utf-8 -*-
from setuptools import setup, Extension, find_packages
test_deps = [
'pytest',
'pytest-cov',
'pytest-xdist',
]
setup(
name='kineticsTools',
version='0.7.0',
author='Pacific Biosciences',
author_email='devnet@pacificbiosciences.com',
license='BSD-3-Clause-Clear',
packages=find_packages(),
include_package_data=True,
exclude_package_data={'kineticsTools': ['tree_predict.c']},
ext_modules=[Extension('kineticsTools/tree_predict', ['kineticsTools/tree_predict.c'],
extra_compile_args=['-O3', '-shared', '-std=c99'],
extra_link_args=['-lc'],
export_symbols=['innerPredict', 'innerPredictCtx', 'init_native'])],
zip_safe=False,
entry_points={'console_scripts': [
'ipdSummary = kineticsTools.ipdSummary:main',
'summarizeModifications = kineticsTools.summarizeModifications:main',
]},
setup_requires=[
'pytest-runner',
],
install_requires=[
'numpy >= 1.17',
'pbcommand >= 2.0.0',
'pbcore >= 2.0.0',
'pyBigWig',
'scipy >= 1.3',
],
tests_require=test_deps,
extras_require={'test': test_deps},
python_requires='>=3.7',
)
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