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KiNG for Debian
---------------
The default build target includes building a source tarball including
Java docs for the API. This is currently not builded. Feel free to
uncomment the according paragraph in debian/control and add the patch
delete_mac_specific_file.patch to the debian/patches/series file in
case you consider this a useful extension for this package.
Upstream provides a ZIP file full of prebuilded binary files (in parts
without source. So this archive was heavily stripped using the script
debian/get-orig-source.
The source tarball contains some binarie files and the handling of these
is described in a mail from upstream which can be read here:
http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-May/015269.html
Here is a copy of this mail:
Date: Fri, 4 May 2012 10:46:35 -0400
From: Ian Davis<ian.w.davis@gmail.com>
To: Andreas Tille<tille@debian.org>
Cc: Vincent Chen<vbc3@duke.edu>, "Vincent B. Chen"<vincent.chen@duke.edu>,
Debian Med Packaging Team<debian-med-packaging@lists.alioth.debian.org>
Subject: Re: What are ndft files and how to edit these
Hi Andreas,
The ndft files are N-dimensional scalar fields in binary format,
representing the statistical density of various side-chain conformations.
See http://kinemage.biochem.duke.edu/databases/rotamer.php, especially the
Son Of download and its README file (
http://kinemage.biochem.duke.edu/databases/READMEforTop500angleData.html).
The binary format is straightforward but made up, you'd have to read the
code in that download to reverse engineer the format, I don't remember it
any more :) I think I called that package Silk, the one that contains the
reader/writer code.
The files are used by tools for rebuilding protein structure, to judge how
(un)favorable a proposed conformation is. Without them, those tools won't
work, though other parts of KiNG may (or may not, depends how good my error
handling code was).
-- Andreas Tille <tille@debian.org> Wed, 18 Apr 2012 14:27:49 +0200
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