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/* ***************************************************************************
*
* KisSplice
* de-novo calling alternative splicing events from RNA-seq data.
*
* ***************************************************************************
*
* Copyright INRIA
* contributors : Vincent Lacroix
* Pierre Peterlongo
* Gustavo Sacomoto
* Vincent Miele
* Alice Julien-Laferriere
* David Parsons
*
*
*
* pierre.peterlongo@inria.fr
* vincent.lacroix@univ-lyon1.fr
*
* This software is a computer program whose purpose is to detect alternative
* splicing events from RNA-seq data.
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited
* liability.
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
*
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*/
#ifndef NNODE_H
#define NNODE_H
// ===========================================================================
// Include Libraries
// ===========================================================================
#include <cstdio>
#include <cstdlib>
#include <list>
// ===========================================================================
// Include Project Files
// ===========================================================================
#include "NEdge.h"
// ===========================================================================
// Class declarations
// ===========================================================================
// ===========================================================================
// Declare Used Namespaces
// ===========================================================================
class NNode
{
public :
// =======================================================================
// Enums
// =======================================================================
// =======================================================================
// Constructors
// =======================================================================
NNode() = default;
// =======================================================================
// Destructors
// =======================================================================
// =======================================================================
// Accessors: getters
// =======================================================================
inline list<NEdge>& getMAdjList( void );
inline const list<NEdge>& getAdjList( void ) const;
inline const string& getSequence( void ) const;
// =======================================================================
// Accessors: setters
// =======================================================================
inline void setSequence( string seq );
// =======================================================================
// Operators
// =======================================================================
// =======================================================================
// Public Methods
// =======================================================================
void add_to_adj_list( NEdge new_edge )
{
_adjList.push_back( new_edge );
}
// =======================================================================
// Public Attributes
// =======================================================================
protected :
// =======================================================================
// Protected Methods
// =======================================================================
// =======================================================================
// Protected Attributes
// =======================================================================
//! Adjacency list TODO: explain more (in, out, both ?) !
list<NEdge> _adjList;
//! Node informations, sequences
string _sequence;
};
// ===========================================================================
// Getters' definitions
// ===========================================================================
inline list<NEdge>& NNode::getMAdjList( void )
{
return _adjList;
}
const list<NEdge>& NNode::getAdjList( void ) const
{
return _adjList;
}
const string& NNode::getSequence( void ) const
{
return _sequence;
}
// ===========================================================================
// Setters' definitions
// ===========================================================================
void NNode::setSequence( string seq )
{
_sequence = seq;
}
// ===========================================================================
// Inline Operators' definitions
// ===========================================================================
// ===========================================================================
// Inline functions' definition
// ===========================================================================
#endif // NNODE_H
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