File: TblToFasta

package info (click to toggle)
kissplice 2.6.7-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 16,752 kB
  • sloc: cpp: 8,783; python: 1,618; perl: 389; sh: 72; makefile: 18
file content (19 lines) | stat: -rw-r--r-- 302 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
#! /bin/sh
# tbl-to-fasta.awk transforms a tbl file into a fasta file, 60 columns per record
# usage=gawk -f tbl-to-fasta TBL_FILE 


gawk '{
  sequence=$2

  ls = length(sequence)
  is = 1

  printf ">%s\n", $1

  while (is <= ls)
  {
    printf "%s\n", substr(sequence,is,60)
    is=is+60
  }
}' "$@"