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#!/usr/bin/env python
import sys
if len(sys.argv)!=4:
print("[ERROR] usage:", sys.argv[0], "<file> <count_threshold> <min_nb_files>")
sys.exit(1)
#read the args
filename = sys.argv[1]
countThreshold = int(sys.argv[2])
minNbFiles = int(sys.argv[3])
#compile the regex
import re
conditionPattern = re.compile("\C\d+\_(\d+)")
with open(filename) as file:
while True:
header1, seq1, header2, seq2 = [file.readline().rstrip() for _ in range(4)]
if header1=="":
break
counts = [int(_) for _ in re.findall(conditionPattern, header1)]
print(counts)
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