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Source: kma
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
architecture-is-64-bit,
zlib1g-dev
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/kma
Vcs-Git: https://salsa.debian.org/med-team/kma.git
Homepage: https://bitbucket.org/genomicepidemiology/kma
Rules-Requires-Root: no
Package: kma
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Description: mapping genomic sequences to raw reads directly against redundant databases
KMA is mapping a method designed to map raw reads directly against
redundant databases, in an ultra-fast manner using seed and extend. KMA
is particularly good at aligning high quality reads against highly
redundant databases, where unique matches often does not exist. It works
for long low quality reads as well, such as those from Nanopore. Non-
unique matches are resolved using the "ConClave" sorting scheme, and a
consensus sequence are outputtet in addition to other common attributes.
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