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#!/bin/bash
set -e
CUR_DIR=`pwd`
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cd "${AUTOPKGTEST_TMP}"
cp ${CUR_DIR}/performanceAndComparisonCMDs.tar.gz .
tar -xzvf *.tar.gz
cd benchmarkCMDs
echo "Simple test to check indexing function"
kma index -i ResFinder.fasta -o ResFinder
for f in ResFinder.*
do
[ -s $f ] || exit 1
done
echo "Clean up ..."
cd ..
rm -rf benchmarkCMDs/ *.tar.gz
echo "PASS"
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