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/* Philip T.L.C. Clausen Jan 2017 plan@dtu.dk */
/*
* Copyright (c) 2017, Philip Clausen, Technical University of Denmark
* All rights reserved.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#define MIN(X, Y) ((X < Y) ? X : Y)
#define MAX(X, Y) ((X < Y) ? Y : X)
#define murmur(index, kmer) index = (3323198485ul ^ kmer) * 0x5bd1e995; index ^= index >> 15;
#define murmur3(index, kmer) index = kmer * 0xcc9e2d51; index = (index << 15) | (index >> 17); index *= 0x1b873593; index = (index << 13) | (index >> 19); index ^= index >> 16; index *= 0x85ebca6b; index ^= index >> 13; index *= 0xc2b2ae35; index ^= index >> 16;
extern int (*cmp)(int, int);
int cmp_or(int t, int q);
int cmp_and(int t, int q);
int cmp_true(int t, int q);
double fastp(long double q);
double p_chisqr(long double q);
double power(double x, unsigned n);
double binP(int n, int k, double p);
unsigned minimum(unsigned *src, unsigned n);
unsigned eQual(unsigned char *qual, const int len, const int minQ, const double *prob);
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