File: kmc_tools-histogram.1.adoc

package info (click to toggle)
kmc 2.3%2Bdfsg-5
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 1,416 kB
  • ctags: 3,050
  • sloc: cpp: 17,316; perl: 178; makefile: 91; sh: 16
file content (43 lines) | stat: -rw-r--r-- 792 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
= kmc_tools-histogram(1)

== NAME

kmc_tools-histogram - produce histogram of k-mer occurrences

== SYNOPSIS

*kmc_tools histogram* <inputdb> [input_params] <output>

== DESCRIPTION

This command produces a histogram of k-mer occurrences.

== OPTIONS

For each input there are additional parameters:

  *-ci<value>*::
    exclude k-mers occurring less than <value> times
  *-cx<value>*::
    exclude k-mers occurring more of than <value> times

== EXAMPLE

    kmc_tools histogram wy_kmc2 -ci3 -cx1000 histo.txt

== AUTHOR

KMC was originally written by:

 - Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)

 - Marek Kokot

 - Szymon Grabowski

 - Agnieszka Debudaj-Grabysz

== COPYING

KMC is a free software distributed under GNU GPL3 licence for academic,
research, and commercial use.