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= kmc_tools-intersect(1)
== NAME
kmc_tools-intersect - calculate intersection of two KMC databases
== SYNOPSIS
*kmc_tools intersect* <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>
== DESCRIPTION
The output database will contain only k-mers that are present in both input sets. The counter value in the output database is equal to the lower counter value in the input.
== OPTIONS
For each input there are additional parameters:
*-ci<value>*::
exclude k-mers occurring less than <value> times
*-cx<value>*::
exclude k-mers occurring more of than <value> times
For output there are additional parameters:
*-ci<value>*::
exclude k-mers occurring less than <value> times
*-cx<value>*::
exclude k-mers occurring more of than <value> times
*-cs<value>*::
maximal value of a counter
== EXAMPLE
kmc -k28 file1.fastq kmers1 tmp
kmc -k28 file2.fastq kmers2 tmp
kmc_tools intersect kmers1 -ci10 -cx200 kmers2 -ci4 -cx100 kmers1_kmers2_intersect -ci20 -cx150
== AUTHOR
KMC was originally written by:
- Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)
- Marek Kokot
- Szymon Grabowski
- Agnieszka Debudaj-Grabysz
== COPYING
KMC is a free software distributed under GNU GPL3 licence for academic,
research, and commercial use.
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