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#!/bin/sh
# autopkgtest check: Build and run a program against libkmc
# Author: Sascha Steinbiss <sascha@steinbiss.name>
set -e
ORIGDIR=$(pwd)
WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
g++ kmc_dump/*cpp -std=c++11 -lkmc -o $WORKDIR/my_kmcdump
[ -x $WORKDIR/my_kmcdump ]
echo "build: OK"
cd $WORKDIR
kmc -ci1 -m1 -k28 $ORIGDIR/debian/tests/sample_6.fastq.gz 1 .
ls -Al
[ -s 1.kmc_suf ]
[ -s 1.kmc_pre ]
echo "kmc: OK"
./my_kmcdump 1 out
[ -s out ]
echo "run: OK"
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