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/*
This file is a part of KMC software distributed under GNU GPL 3 licence.
The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
Authors: Marek Kokot
Version: 2.3.0
Date : 2015-08-21
*/
#ifndef _DEFS_H
#define _DEFS_H
#include <stdio.h>
#include <stdlib.h>
using uint32 = unsigned int;
using uint64 = unsigned long long;
using int32 = int;
using int64 = long long;
using uchar = unsigned char;
#define MIN(x,y) ((x) < (y) ? (x) : (y))
#define MAX(x,y) ((x) > (y) ? (x) : (y))
#define NORM(x, lower, upper) ((x) < (lower) ? (lower) : (x) > (upper) ? (upper) : (x))
#define BYTE_LOG(x) (((x) < (1 << 8)) ? 1 : ((x) < (1 << 16)) ? 2 : ((x) < (1 << 24)) ? 3 : 4)
//#define DISABLE_ASMLIB
//#define ENABLE_DEBUG
//#define ENABLE_LOGGER
#define KMC_VER "2.3.0"
#define KMC_DATE "2015-08-21"
#define DEFAULT_CIRCULAL_QUEUE_CAPACITY (4)
#define SUFIX_WRITE_QUEUE_CAPACITY (10)
#define KMC1_DB_READER_PREFIX_BUFF_BYTES (1 << 24)
#define KMC1_DB_READER_SUFIX_BUFF_BYTES (1 << 24)
#define KMC2_DB_READER_PREFIX_BUFF_BYTES (1 << 24)
#define KMC2_DB_READER_SUFIX_BUFF_BYTES (1 << 24)
#define KMC1_DB_WRITER_PREFIX_BUFF_BYTES (1 << 24)
#define KMC1_DB_WRITER_SUFIX_BUFF_BYTES (1 << 24)
#define HISTOGRAM_MAX_COUNTER_DEFAULT 10000
#define DUMP_BUF_SIZE (1 << 24)
//Increasing this value will lead to more memory consumption, but from preliminary observations it has no performance(is sense of time) impact, so it is recommended to not change this value
#define BUNDLE_CAPACITY (1 << 12) //in kmers, for kmers and counters.
//this value has high impact to used memory, max value of memory is = 2 * SINGLE_BIN_BUFF_SIZE_FOR_DB2_READER * number_of_kmc2_input_dbs * number_of_bins_per_in_db
//increasing this value can have positive performance impact when running on HDD
#define SINGLE_BIN_BUFF_SIZE_FOR_DB2_READER (1 << 21) //if less is needed less will be allocated
//default values
#define CUTOFF_MIN 2
#define CUTOFF_MAX 1000000000
#define COUNTER_MAX 255
#define MAX_K 256
#define KMER_WORDS ((MAX_K + 31) / 32)
#define USE_META_PROG
#ifdef WIN32
#define my_fopen fopen
#define my_fseek _fseeki64
#define my_ftell _ftelli64
#else
#define my_fopen fopen
#define my_fseek fseek
#define my_ftell ftell
#endif
#endif
// ***** EOF
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