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/*
This file is a part of KMC software distributed under GNU GPL 3 licence.
The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
Version: 2.3.0
Date : 2015-08-21
*/
#ifndef _DEFS_H
#define _DEFS_H
#define KMC_VER "2.3.0"
#define KMC_DATE "2015-08-21"
#define _CRT_SECURE_NO_WARNINGS
#define MIN(x,y) ((x) < (y) ? (x) : (y))
#define MAX(x,y) ((x) > (y) ? (x) : (y))
#define NORM(x, lower, upper) ((x) < (lower) ? (lower) : (x) > (upper) ? (upper) : (x))
#define uchar unsigned char
#include <time.h>
//uncomment below line to disable asmlib
//#define DISABLE_ASMLIB
//#define DEBUG_MODE
//#define DEVELOP_MODE
#define USE_META_PROG
#define KMER_X 3
#define STATS_FASTQ_SIZE (1 << 28)
#define EXPAND_BUFFER_RECS (1 << 16)
#define MIN_N_BINS 64
#define MAX_N_BINS 2000
#ifndef MAX_K
#define MAX_K 256
#endif
#define MIN_K 1
#define MIN_MEM 1
// Range of number of FASTQ/FASTA reading threads
#define MIN_SF 1
#define MAX_SF 32
// Range of number of signature length
#define MIN_SL 5
#define MAX_SL 8
// Range of number of splitting threads
#define MIN_SP 1
#define MAX_SP 64
// Range of number of sorting threads
#define MIN_SO 1
#define MAX_SO 64
//Range of number of sorter threads pre sorter in strict memory mode
#define MIN_SMSO 1
#define MAX_SMSO 16
//Range of number of uncompactor threads in strict memory mode
#define MIN_SMUN 1
#define MAX_SMUN 16
//Range of number of merger threads in strict memory mode
#define MIN_SMME 1
#define MAX_SMME 16
// Range of number of threads per single sorting thread
#define MIN_SR 1
#define MAX_SR 16
typedef float count_t;
#define KMER_WORDS ((MAX_K + 31) / 32)
#ifdef _DEBUG
#define A_memcpy memcpy
#define A_memset memset
#endif
#ifdef WIN32
#define my_fopen fopen
#define my_fseek _fseeki64
#define my_ftell _ftelli64
typedef int int32;
typedef unsigned int uint32;
typedef long long int64;
typedef unsigned long long uint64;
#else
#define my_fopen fopen
#define my_fseek fseek
#define my_ftell ftell
#define _TCHAR char
#define _tmain main
typedef int int32;
typedef unsigned int uint32;
typedef long long int64;
typedef unsigned long long uint64;
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <string.h>
#include <stdio.h>
#include <ext/algorithm>
#include <iostream>
using namespace std;
using __gnu_cxx::copy_n;
#endif
const int32 MAX_STR_LEN = 32768;
#define ALIGNMENT 0x100
#define BYTE_LOG(x) (((x) < (1 << 8)) ? 1 : ((x) < (1 << 16)) ? 2 : ((x) < (1 << 24)) ? 3 : 4)
#define BYTE_LOG_ULL(x) (((x) < (1ull << 8)) ? 1 : ((x) < (1ull << 16)) ? 2 : ((x) < (1ull << 24)) ? 3 : ((x) < (1ull << 32)) ? 4 : ((x) < (1ull << 40) ? 5 : ((x) < (1ull << 48) ? 6 : ((x) < (1ull << 56)) ? 7 : 8)))
#endif
// ***** EOF
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