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/*
This file is a part of KMC software distributed under GNU GPL 3 licence.
The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
Version: 2.3.0
Date : 2015-08-21
*/
#ifndef _KB_STORER_H
#define _KB_STORER_H
#include "defs.h"
#include "params.h"
#include "kmer.h"
#include "radix.h"
#include <string>
#include <algorithm>
#include <numeric>
#include <array>
#include <tuple>
#include <stdio.h>
using namespace std;
//************************************************************************************************************
// CKmerBinStorer - storer of bins of k-mers
//************************************************************************************************************
class CKmerBinStorer {
CMemoryMonitor *mm;
uint64 total_size;
CMemoryPool *pmm_bins;
string working_directory;
int n_bins;
CBinPartQueue *q_part;
CBinDesc *bd;
uint64 buffer_size_bytes;
uint64 max_mem_buffer;
uint64 max_mem_single_package;
CSignatureMapper *s_mapper;
CDiskLogger *disk_logger;
uchar* tmp_buff;
CMemDiskFile** files;
uint64 *buf_sizes;
uint64 max_buf_size;
uint32 max_buf_size_id;
bool mem_mode;
typedef list<tuple<uchar *, uint32, uint32>> elem_t;
elem_t** buffer;
void Release();
string GetName(int n);
void CheckBuffer();
void ReleaseBuffer();
void PutBinToTmpFile(uint32 n);
public:
void GetTotal(uint64& _total)
{
_total = total_size;
}
CKmerBinStorer(CKMCParams &Params, CKMCQueues &Queues);
~CKmerBinStorer();
bool OpenFiles();
void ProcessQueue();
};
//************************************************************************************************************
// CWKmerBinStorer - wrapper for multithreading purposes
//************************************************************************************************************
class CWKmerBinStorer {
CKmerBinStorer *kbs;
public:
void GetTotal(uint64& _total)
{
kbs->GetTotal(_total);
}
CWKmerBinStorer(CKMCParams &Params, CKMCQueues &Queues);
~CWKmerBinStorer();
void operator()();
};
#endif
// ***** EOF
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