File: bkb_reader.h

package info (click to toggle)
kmc 3.2.4%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 3,716 kB
  • sloc: cpp: 38,308; python: 664; makefile: 216; perl: 179; sh: 34
file content (52 lines) | stat: -rw-r--r-- 1,470 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52

/*
This file is a part of KMC software distributed under GNU GPL 3 licence.
The homepage of the KMC project is http://sun.aei.polsl.pl/kmc

Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot

Version: 3.2.4
Date   : 2024-02-09
*/

#ifndef _BKB_READER_H_
#define  _BKB_READER_H_

#include "params.h"

//************************************************************************************************************
// CBigKmerBinReader - reader of bins from distribution phase. Only in strict memory mode
//************************************************************************************************************

class CBigKmerBinReader
{
	CTooLargeBinsQueue * tlbq;
	CDiskLogger* disk_logger;
	CBinDesc* bd;
	CBigBinPartQueue* bbpq;
	CMemoryPool* sm_pmm_input_file;

	KMC::IProgressObserver* progressObserver;
	uint64 sm_mem_part_input_file;
	uint32 kmer_len;
public:
	CBigKmerBinReader(CKMCParams& Params, CKMCQueues& Queues);
	~CBigKmerBinReader();
	void ProcessBigBin();
};


//************************************************************************************************************
// CWBigKmerBinReader - wrapper for multithreading purposes
//************************************************************************************************************
class CWBigKmerBinReader
{
	std::unique_ptr<CBigKmerBinReader> bkb_reader;
public:
	CWBigKmerBinReader(CKMCParams& Params, CKMCQueues& Queues);
	void operator()();
};

#endif 

// ***** EOF