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This guide tells how to compile and install the software.
----------------------------------------
Quick Instructions:
% gmake install
There! That wasn't tough at all, was it!?
The software is compiled in place, and installed into a directory named
after the OS/architecture, for example, Linux-amd64.
----------------------------------------
Detailed Instructions:
0) Required Software
1) Configuration
2) Compilation
3) Installation
4) Other build targets
----------
0) Required software
Project kmer requires two additional software packages be installed:
python and gmake.
0.1) Python.
Python (http://www.python.org/) is a freely available programming
language. It is frequently installed by many OS installations.
It is only needed by ATAC/A2Amapper. If python is not installed,
ATAC/A2Amapper will not be built.
Version 2.4+ is recommended.
Version 2.3 has seen limited testing and seems to work.
Version 2.2 might work, but is unsupported.
0.2) gmake.
The GNU make program (gmake) is used to build the software. The BSD
make will not work.
gmake v 3.81 or higher is REQUIRED. This shouldn't be a problem, as that
was released in April 2006. It _was_ a problem when most of this software
was written.
----------
1) Configuration
This is optional. It allows compilation for debuging and profiliing.
% sh configure.sh [debug | profile]
Supplying 'debug' as an argument will build debuggable executables.
Supplying 'profile' as an argument will build profiling executables.
Not all architectures support profiling.
If configure.sh reports that your architecture is unsupported, you'll
have to port...or force it to use, say, linux with "configure.sh
linux".
If configure.sh reports that python cannot be found, you likely need
to install python, version 2.3 or 2.4. If you have pyhton installed
in an unusual location, edit the script.
----------
2) Compilation
% gmake
If gmake crashes or returns
gmake: *** No rule to make target `.all', needed by `all'. Stop.
then you need to update your gmake to at least version 3.81.
----------
3) Installation
% gmake install
will copy all executables, libraries and header files into an
OS/architecture specific directory. Binaries, for example, will be in
FreeBSD-amd64/bin or Linux-i686/bin.
----------
4) Other build targets
'gmake clean' will remove the object files, leaving the binaries.
'gmake real-clean' will remove all traces of a build, leaving you
with (hopefully) a virgin copy of the software.
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