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#!/usr/bin/make -f
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
DPKG_EXPORT_BUILDFLAGS = 1
include /usr/share/dpkg/default.mk
# The custom build system doesn't support CPPFLAGS
CFLAGS:=$(CPPFLAGS) $(CFLAGS)
CXXFLAGS:=$(CPPFLAGS) $(CXXFLAGS) -std=c++03
# The trailing slashes are very important to the build system
subdirectories:= $(filter-out debian/, $(shell ls -d */))
# Reference for unusable modules:
# https://lists.debian.org/debian-med/2015/05/msg00075.html
unusable:= tapper/ trie/
# Note: Parallel build is not reliable
%:
dh $@
override_dh_auto_build:
# The Makefile apparently doesn't use regular LDFLAGS.
# It defines CLDFLAGS and CXXLDFLAGS as empty strings, so let's
# use them here.
$(MAKE) install \
CLDFLAGS="$(LDFLAGS)" \
CXXLDFLAGS="$(LDFLAGS)"
# WITHOUT="$(unusable)"
mv installdir/bin/atac.pl installdir/bin/atac
mv -v installdir/lib/halignmodule.so installdir/lib/halign.so
mv -v installdir/lib/localAlignerInterfacemodule.so installdir/lib/localAlignerInterface.so
override_dh_auto_clean:
$(MAKE) real-clean
rm -rf installdir
execute_after_dh_install:
for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` `grep -l '#!/usr/bin/env \+perl' debian/*/usr/lib/atac/bin/*` ; do \
sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' $${perlscript} ; \
done
override_dh_python3:
dh_python3 --no-ext-rename
get-orig-source:
DEB_VERSION_UPSTREAM=$(DEB_VERSION_UPSTREAM) debian/get-orig-source
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