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Source: lagan
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Steffen Moeller <moeller@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
libboost-dev
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/lagan
Vcs-Git: https://salsa.debian.org/med-team/lagan.git
Homepage: http://lagan.stanford.edu/lagan_web/index.shtml
Package: lagan
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Description: highly parametrizable pairwise global genome sequence aligner
Lagan takes local alignments generated by CHAOS as anchors, and limits
the search area of the Needleman-Wunsch algorithm around these anchors.
.
Multi-LAGAN is a generalization of the pairwise algorithm to multiple
sequence alignment. M-LAGAN performs progressive pairwise alignments,
guided by a user-specified phylogenetic tree. Alignments are aligned to
other alignments using the sum-of-pairs metric.
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