1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
|
// **************************************************************************
// lj_smooth.cu
// -------------------
// Gurgen Melikyan (HSE University)
//
// Device code for acceleration of the lj/smooth pair style
//
// __________________________________________________________________________
// This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
// __________________________________________________________________________
//
// begin :
// email : gkmeliyan@edu.hse.ru
// ***************************************************************************
#if defined(NV_KERNEL) || defined(USE_HIP)
#include "lal_aux_fun1.h"
#ifndef _DOUBLE_DOUBLE
_texture( pos_tex,float4);
#else
_texture_2d( pos_tex,int4);
#endif
#else
#define pos_tex x_
#endif
__kernel void k_lj_smooth(const __global numtyp4 *restrict x_,
const __global numtyp4 *restrict lj1,
const __global numtyp4 *restrict lj3,
const __global numtyp4 *restrict ljsw,
const __global numtyp2 *restrict ljsw0,
const int lj_types,
const __global numtyp *restrict sp_lj,
const __global int * dev_nbor,
const __global int * dev_packed,
__global acctyp4 *restrict ans,
__global acctyp *restrict engv,
const int eflag, const int vflag, const int inum,
const int nbor_pitch, const int t_per_atom) {
int tid, ii, offset;
atom_info(t_per_atom,ii,tid,offset);
int n_stride;
local_allocate_store_pair();
acctyp4 f;
f.x=(acctyp)0; f.y=(acctyp)0; f.z=(acctyp)0;
acctyp energy, virial[6];
if (EVFLAG) {
energy=(acctyp)0;
for (int i=0; i<6; i++) virial[i]=(acctyp)0;
}
if (ii<inum) {
int i, numj, nbor, nbor_end;
nbor_info(dev_nbor,dev_packed,nbor_pitch,t_per_atom,ii,offset,i,numj,
n_stride,nbor_end,nbor);
numtyp4 ix; fetch4(ix,i,pos_tex); //x_[i];
int itype=ix.w;
numtyp force, r6inv, factor_lj, forcelj;
numtyp r, t, tsq, fskin;
for ( ; nbor<nbor_end; nbor+=n_stride) {
int j=dev_packed[nbor];
factor_lj = sp_lj[sbmask(j)];
j &= NEIGHMASK;
numtyp4 jx; fetch4(jx,j,pos_tex); //x_[j];
int jtype=jx.w;
// Compute r12
numtyp delx = ix.x-jx.x;
numtyp dely = ix.y-jx.y;
numtyp delz = ix.z-jx.z;
numtyp rsq = delx*delx+dely*dely+delz*delz;
int mtype=itype*lj_types+jtype;
if (rsq<lj1[mtype].z) {
numtyp r2inv=ucl_recip(rsq);
if (rsq < lj1[mtype].w) {
r6inv = r2inv*r2inv*r2inv;
forcelj = r6inv*(lj1[mtype].x*r6inv-lj1[mtype].y);
}
else {
r = sqrt(rsq);
t = r - ljsw0[mtype].y;
tsq = t*t;
fskin = ljsw[mtype].x + ljsw[mtype].y*t +
ljsw[mtype].z*tsq + ljsw[mtype].w*tsq*t;
forcelj = fskin*r;
}
force = factor_lj*r2inv*forcelj;
f.x+=delx*force;
f.y+=dely*force;
f.z+=delz*force;
if (EVFLAG && eflag) {
numtyp e;
if (rsq < lj1[mtype].w)
e = r6inv * (lj3[mtype].x*r6inv - lj3[mtype].y) - lj3[mtype].z;
else
e = ljsw0[mtype].x - ljsw[mtype].x*t -
ljsw[mtype].y*tsq/2.0 - ljsw[mtype].z*tsq*t/3.0 -
ljsw[mtype].w*tsq*tsq/4.0 - lj3[mtype].z;
//numtyp e=r6inv*(lj3[mtype].x*r6inv-lj3[mtype].y);
energy+=factor_lj*e;
}
if (EVFLAG && vflag) {
virial[0] += delx*delx*force;
virial[1] += dely*dely*force;
virial[2] += delz*delz*force;
virial[3] += delx*dely*force;
virial[4] += delx*delz*force;
virial[5] += dely*delz*force;
}
}
} // for nbor
} // if ii
store_answers(f,energy,virial,ii,inum,tid,t_per_atom,offset,eflag,vflag,
ans,engv);
}
__kernel void k_lj_smooth_fast(const __global numtyp4 *restrict x_,
const __global numtyp4 *restrict lj1_in,
const __global numtyp4 *restrict lj3_in,
const __global numtyp4 *restrict ljsw,
const __global numtyp2 *restrict ljsw0,
const __global numtyp *restrict sp_lj_in,
const __global int * dev_nbor,
const __global int * dev_packed,
__global acctyp4 *restrict ans,
__global acctyp *restrict engv,
const int eflag, const int vflag, const int inum,
const int nbor_pitch, const int t_per_atom) {
int tid, ii, offset;
atom_info(t_per_atom,ii,tid,offset);
#ifndef ONETYPE
__local numtyp4 lj1[MAX_SHARED_TYPES*MAX_SHARED_TYPES];
__local numtyp4 lj3[MAX_SHARED_TYPES*MAX_SHARED_TYPES];
__local numtyp sp_lj[4];
if (tid<4)
sp_lj[tid]=sp_lj_in[tid];
if (tid<MAX_SHARED_TYPES*MAX_SHARED_TYPES) {
lj1[tid]=lj1_in[tid];
if (EVFLAG && eflag)
lj3[tid]=lj3_in[tid];
}
__syncthreads();
#else
const numtyp lj1x=lj1_in[ONETYPE].x;
const numtyp lj1y=lj1_in[ONETYPE].y;
const numtyp cutsq=lj1_in[ONETYPE].z;
numtyp lj3x, lj3y, lj3z;
if (EVFLAG && eflag) {
lj3x=lj3_in[ONETYPE].x;
lj3y=lj3_in[ONETYPE].y;
lj3z=lj3_in[ONETYPE].z;
}
#endif
int n_stride;
local_allocate_store_pair();
acctyp4 f;
f.x=(acctyp)0; f.y=(acctyp)0; f.z=(acctyp)0;
acctyp energy, virial[6];
if (EVFLAG) {
energy=(acctyp)0;
for (int i=0; i<6; i++) virial[i]=(acctyp)0;
}
if (ii<inum) {
int i, numj, nbor, nbor_end;
nbor_info(dev_nbor,dev_packed,nbor_pitch,t_per_atom,ii,offset,i,numj,
n_stride,nbor_end,nbor);
numtyp4 ix; fetch4(ix,i,pos_tex); //x_[i];
#ifndef ONETYPE
int iw=ix.w;
int itype=fast_mul((int)MAX_SHARED_TYPES,iw);
numtyp force, r6inv, factor_lj, forcelj;
numtyp r, t, tsq, fskin;
#endif
NOUNROLL
for ( ; nbor<nbor_end; nbor+=n_stride) {
int j=dev_packed[nbor];
#ifndef ONETYPE
factor_lj = sp_lj[sbmask(j)];
j &= NEIGHMASK;
#endif
numtyp4 jx; fetch4(jx,j,pos_tex); //x_[j];
#ifndef ONETYPE
int mtype=itype+jx.w;
#endif
// Compute r12
numtyp delx = ix.x-jx.x;
numtyp dely = ix.y-jx.y;
numtyp delz = ix.z-jx.z;
numtyp rsq = delx*delx+dely*dely+delz*delz;
if (rsq<lj1[mtype].z) {
numtyp r2inv=ucl_recip(rsq);
if (rsq < lj1[mtype].w) {
r6inv = r2inv*r2inv*r2inv;
forcelj = r6inv*(lj1[mtype].x*r6inv-lj1[mtype].y);
}
else {
r = sqrt(rsq);
t = r - ljsw0[mtype].y; //?
tsq = t*t;
fskin = ljsw[mtype].x + ljsw[mtype].y*t +
ljsw[mtype].z*tsq + ljsw[mtype].w*tsq*t;
forcelj = fskin*r;
}
force = factor_lj*r2inv*forcelj;
f.x+=delx*force;
f.y+=dely*force;
f.z+=delz*force;
if (EVFLAG && eflag) {
numtyp e;
if (rsq < lj1[mtype].w)
e = r6inv * (lj3[mtype].x*r6inv - lj3[mtype].y) - lj3[mtype].z;
else
e = ljsw0[mtype].x - ljsw[mtype].x*t -
ljsw[mtype].y*tsq/2.0 - ljsw[mtype].z*tsq*t/3.0 -
ljsw[mtype].w*tsq*tsq/4.0 - lj3[mtype].z; //???
energy+=factor_lj*e;
}
if (EVFLAG && vflag) {
virial[0] += delx*delx*force;
virial[1] += dely*dely*force;
virial[2] += delz*delz*force;
virial[3] += delx*dely*force;
virial[4] += delx*delz*force;
virial[5] += dely*delz*force;
}
}
} // for nbor
} // if ii
store_answers(f,energy,virial,ii,inum,tid,t_per_atom,offset,eflag,vflag,
ans,engv);
}
|
