File: AT77.mat

package info (click to toggle)
last-align 1609-1
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 14,656 kB
  • sloc: cpp: 44,297; python: 5,192; ansic: 1,937; sh: 651; makefile: 457
file content (9 lines) | stat: -rw-r--r-- 210 bytes parent folder | download | duplicates (7) 
1
2
3
4
5
6
7
8
9
 
# This scoring scheme is for weakly-similar AT-rich DNA (~27%
# substitutions and ~77% A+T) (MC Frith, NAR 2011 39(4):e23).

#last -a15 -b2
   A  C  G  T
A  2 -3 -2 -3
C -3  5 -3 -2
G -2 -3  5 -3
T -3 -2 -3  2