File: BISR.seed

package info (click to toggle)
last-align 1609-1
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 14,656 kB
  • sloc: cpp: 44,297; python: 5,192; ansic: 1,937; sh: 651; makefile: 457
file content (11 lines) | stat: -rw-r--r-- 225 bytes parent folder | download | duplicates (2) 
1
2
3
4
5
6
7
8
9
10
11
 
# This seeding scheme is for aligning bisulfite-converted DNA
# *reverse* strands to a closely-related genome (MC Frith, R Mori, K
# Asai, NAR 2012 40:e100).

#lastdb -w2
#lastal -R10 -pBISR

1  AG C T
0  ACGT

1111110101100