1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
#! /bin/sh
# Regression tests
cd $(dirname $0)
PATH=../bin:$PATH
maf=SRR359290-1k.maf
{
last-split -h
last-split -m0.01 -fMAF+ $maf
last-split -m0.01 -c0 $maf
last-split -m0.01 -t0 $maf
last-split -m0.01 -M7.5 -S2 $maf
last-split -m0.001 -s180 $maf
last-split -m0.01 -n -fMAF+ $maf
last-split -d0 -m0.001 -s180 -fMAF+ $maf
last-split -d1 -m0.001 -s180 -fMAF+ $maf
last-split -d2 -m0.001 -s180 -fMAF+ $maf
grep -v '^q' $maf | last-split -m0.001 -s180 -fMAF+
last-split -fMAF+ 102.maf
last-split -fMAF 102.maf
last-split -d1 -fMAF+ spliceWithGap.maf
last-split -r split1.maf
} | diff -u last-split-test.out -
|
