File: BISF.mat

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last-align 1645-1
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# This scoring scheme is for aligning bisulfite-converted DNA forward
# strands to a closely-related genome (MC Frith, R Mori, K Asai, NAR
# 2012 40(13):e100).

#last -a21 -b9 -R10
    A   C   G   T
A   6 -18 -18 -18
C -18   6 -18   3
G -18 -18   6 -18
T -18 -18 -18   3