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|
TEST 102.maf
3396982345 3177
TEST -v -x600 -c orange -r teal --sort1=2 --border-color=brown 102.maf
last-dotplot: reading alignments...
last-dotplot: cutting...
last-dotplot: reading secondary alignments...
last-dotplot: cutting...
last-dotplot: sorting...
last-dotplot: chr19 1383883 1383969
last-dotplot: chr19 1387780 1388965
last-dotplot: chr19 1390828 1391190
last-dotplot: chr19 1393213 1393358
last-dotplot: chr19 1395360 1395511
last-dotplot: chr19 17615403 17615478
last-dotplot: chr19 18430532 18430615
last-dotplot: chr19 47072174 47072264
last-dotplot: chr3 23607529 23607606
last-dotplot: chr3 33026597 33026675
last-dotplot: chr3 37588349 37588441
last-dotplot: chr3 89815452 89815525
last-dotplot: chr3 127741348 127741429
last-dotplot: chr3 130609381 130609461
last-dotplot: chr3 152862866 152862947
last-dotplot: chr3 186865624 186865699
last-dotplot: chr5 4867398 4867471
last-dotplot: chr5 74376550 74376623
last-dotplot: chr5 93489515 93489591
last-dotplot: chr5 169763588 169763671
last-dotplot: chr5 171574427 171574500
last-dotplot: chr5 173701172 173701249
last-dotplot: chr5 177958514 177958591
last-dotplot: chr17 19079582 19079655
last-dotplot: chr17 19172423 19172496
last-dotplot: chr17 19205764 19205837
last-dotplot: chr17 27793612 27793685
last-dotplot: chr17 28925902 28925982
last-dotplot: chr17 29190042 29190115
last-dotplot: chr17 58670463 58670536
last-dotplot: chr7 65260279 65260354
last-dotplot: chr7 100370569 100370642
last-dotplot: chr7 101590352 101590447
last-dotplot: chr7 101723218 101723313
last-dotplot: chr7 157969496 157969572
last-dotplot: chr1 21590603 21590709
last-dotplot: chr1 145869990 145870063
last-dotplot: chr1 155997846 155997940
last-dotplot: chr1 161050878 161050970
last-dotplot: chr10 122813007 122813087
last-dotplot: chr10 124281367 124281441
last-dotplot: chr10 126932842 126932937
last-dotplot: chr22 20726561 20726644
last-dotplot: chr22 23657463 23657536
last-dotplot: chr22 46458773 46458849
last-dotplot: chr6 1842804 1842877
last-dotplot: chr6 65786074 65786151
last-dotplot: chr6 170257674 170257754
last-dotplot: chr8 76840831 76840936
last-dotplot: chr8 98433234 98433318
last-dotplot: chr12 19357508 19357581
last-dotplot: chr12 71544959 71545052
last-dotplot: chr14 80332102 80332183
last-dotplot: chr14 104715645 104715730
last-dotplot: chr18 8561181 8561272
last-dotplot: chr18 55335065 55335140
last-dotplot: chr4 3839035 3839110
last-dotplot: chr4 54783677 54783767
last-dotplot: chr2 192414435 192414516
last-dotplot: chr2 240456604 240456683
last-dotplot: chr15 45614722 45614800
last-dotplot: chr15 78230458 78230537
last-dotplot: chr21 14291153 14291236
last-dotplot: chr21 43027907 43027980
last-dotplot: chr20 4034120 4034195
last-dotplot: chr20 17684717 17684790
last-dotplot: chrX 39928389 39928462
last-dotplot: chrX 83302574 83302647
last-dotplot: chr16 722456 722540
last-dotplot: chr11 67464119 67464196
last-dotplot: chr13 113342188 113342261
last-dotplot:
last-dotplot: 102 0 699
last-dotplot:
last-dotplot: choosing bp per pixel...
last-dotplot: choosing bp per pixel...
last-dotplot: bp per pixel = 15
last-dotplot: width: 581
last-dotplot: height: 47
last-dotplot: processing alignments...
last-dotplot: reading annotations...
last-dotplot: drawing...
2981739013 1818
TEST -v -y30 --max-gap1=0 --pad=0.08 --border-pixels=2 --sort1=3 102.maf
last-dotplot: reading alignments...
last-dotplot: cutting...
last-dotplot: reading secondary alignments...
last-dotplot: cutting...
last-dotplot: sorting...
last-dotplot: chr16 722428 722568
last-dotplot: chr19 1383855 1383997
last-dotplot: chr19 1387752 1387902
last-dotplot: chr19 1388468 1388648
last-dotplot: chr19 1388774 1388993
last-dotplot: chr19 1390800 1391218
last-dotplot: chr19 1393185 1393386
last-dotplot: chr19 1395332 1395539
last-dotplot: chr19 17615375 17615506
last-dotplot: chr19 18430504 18430643
last-dotplot: chr19 47072146 47072292
last-dotplot: chr8 76840803 76840964
last-dotplot: chr8 98433206 98433346
last-dotplot: chr20 4034092 4034223
last-dotplot: chr20 17684689 17684818
last-dotplot: chr4 3839007 3839138
last-dotplot: chr4 54783649 54783795
last-dotplot: chr12 19357480 19357609
last-dotplot: chr12 71544931 71545080
last-dotplot: chr18 8561153 8561300
last-dotplot: chr18 55335037 55335168
last-dotplot: chr7 65260251 65260382
last-dotplot: chr7 100370541 100370670
last-dotplot: chr7 101590324 101590475
last-dotplot: chr7 101723190 101723341
last-dotplot: chr7 157969468 157969600
last-dotplot: chr13 113342160 113342289
last-dotplot: chr17 19079554 19079683
last-dotplot: chr17 19172395 19172524
last-dotplot: chr17 19205736 19205865
last-dotplot: chr17 27793584 27793713
last-dotplot: chr17 28925874 28926010
last-dotplot: chr17 29190014 29190143
last-dotplot: chr17 58670435 58670564
last-dotplot: chr22 20726533 20726672
last-dotplot: chr22 23657435 23657564
last-dotplot: chr22 46458745 46458877
last-dotplot: chr6 1842776 1842905
last-dotplot: chr6 65786046 65786179
last-dotplot: chr6 170257646 170257782
last-dotplot: chr5 4867370 4867499
last-dotplot: chr5 74376522 74376651
last-dotplot: chr5 93489487 93489619
last-dotplot: chr5 169763560 169763699
last-dotplot: chr5 171574399 171574528
last-dotplot: chr5 173701144 173701277
last-dotplot: chr5 177958486 177958619
last-dotplot: chr1 21590575 21590737
last-dotplot: chr1 145869962 145870091
last-dotplot: chr1 155997818 155997968
last-dotplot: chr1 161050850 161050998
last-dotplot: chr11 67464091 67464224
last-dotplot: chr14 80332074 80332211
last-dotplot: chr14 104715617 104715758
last-dotplot: chr3 23607501 23607634
last-dotplot: chr3 33026569 33026703
last-dotplot: chr3 37588321 37588469
last-dotplot: chr3 89815424 89815553
last-dotplot: chr3 127741320 127741457
last-dotplot: chr3 130609353 130609489
last-dotplot: chr3 152862838 152862975
last-dotplot: chr3 186865596 186865727
last-dotplot: chr2 192414407 192414544
last-dotplot: chr2 240456576 240456711
last-dotplot: chr15 45614694 45614828
last-dotplot: chr15 78230430 78230565
last-dotplot: chr10 122812979 122813115
last-dotplot: chr10 124281339 124281469
last-dotplot: chr10 126932814 126932965
last-dotplot: chr21 14291125 14291264
last-dotplot: chr21 43027879 43028008
last-dotplot: chrX 39928361 39928490
last-dotplot: chrX 83302546 83302675
last-dotplot:
last-dotplot: 102 0 699
last-dotplot:
last-dotplot: choosing bp per pixel...
last-dotplot: choosing bp per pixel...
last-dotplot: bp per pixel = 24
last-dotplot: width: 619
last-dotplot: height: 30
last-dotplot: processing alignments...
last-dotplot: reading annotations...
last-dotplot: drawing...
3953352818 1272
TEST -v --strands1=1 102.maf
last-dotplot: reading alignments...
last-dotplot: cutting...
last-dotplot: reading secondary alignments...
last-dotplot: cutting...
last-dotplot: sorting...
last-dotplot: chr1 21590603 21590709 +
last-dotplot: chr1 145869990 145870063 +
last-dotplot: chr1 155997846 155997940 +
last-dotplot: chr1 161050878 161050970 +
last-dotplot: chr2 240456604 240456683 -
last-dotplot: chr2 192414435 192414516 -
last-dotplot: chr3 186865624 186865699 -
last-dotplot: chr3 152862866 152862947 -
last-dotplot: chr3 130609381 130609461 -
last-dotplot: chr3 127741348 127741429 -
last-dotplot: chr3 89815452 89815525 -
last-dotplot: chr3 37588349 37588441 -
last-dotplot: chr3 33026597 33026675 -
last-dotplot: chr3 23607529 23607606 -
last-dotplot: chr4 54783677 54783767 -
last-dotplot: chr4 3839035 3839110 -
last-dotplot: chr5 4867398 4867471 +
last-dotplot: chr5 74376550 74376623 +
last-dotplot: chr5 93489515 93489591 +
last-dotplot: chr5 169763588 169763671 +
last-dotplot: chr5 171574427 171574500 +
last-dotplot: chr5 173701172 173701249 +
last-dotplot: chr5 177958514 177958591 +
last-dotplot: chr6 170257674 170257754 -
last-dotplot: chr6 65786074 65786151 -
last-dotplot: chr6 1842804 1842877 -
last-dotplot: chr7 157969496 157969572 -
last-dotplot: chr7 101723218 101723313 -
last-dotplot: chr7 101590352 101590447 -
last-dotplot: chr7 100370569 100370642 -
last-dotplot: chr7 65260279 65260354 -
last-dotplot: chr8 76840831 76840936 +
last-dotplot: chr8 98433234 98433318 +
last-dotplot: chr10 122813007 122813087 +
last-dotplot: chr10 124281367 124281441 +
last-dotplot: chr10 126932842 126932937 +
last-dotplot: chr11 67464119 67464196 +
last-dotplot: chr12 71544959 71545052 -
last-dotplot: chr12 19357508 19357581 -
last-dotplot: chr13 113342188 113342261 +
last-dotplot: chr14 80332102 80332183 +
last-dotplot: chr14 104715645 104715730 +
last-dotplot: chr15 45614722 45614800 +
last-dotplot: chr15 78230458 78230537 +
last-dotplot: chr16 722456 722540 -
last-dotplot: chr17 19079582 19079655 +
last-dotplot: chr17 19172423 19172496 +
last-dotplot: chr17 19205764 19205837 +
last-dotplot: chr17 27793612 27793685 +
last-dotplot: chr17 28925902 28925982 +
last-dotplot: chr17 29190042 29190115 +
last-dotplot: chr17 58670463 58670536 +
last-dotplot: chr18 8561181 8561272 +
last-dotplot: chr18 55335065 55335140 +
last-dotplot: chr19 47072174 47072264 -
last-dotplot: chr19 18430532 18430615 -
last-dotplot: chr19 17615403 17615478 -
last-dotplot: chr19 1395360 1395511 -
last-dotplot: chr19 1393213 1393358 -
last-dotplot: chr19 1390828 1391190 -
last-dotplot: chr19 1387780 1388965 -
last-dotplot: chr19 1383883 1383969 -
last-dotplot: chr20 4034120 4034195 +
last-dotplot: chr20 17684717 17684790 +
last-dotplot: chr21 14291153 14291236 +
last-dotplot: chr21 43027907 43027980 +
last-dotplot: chr22 46458773 46458849 -
last-dotplot: chr22 23657463 23657536 -
last-dotplot: chr22 20726561 20726644 -
last-dotplot: chrX 39928389 39928462 +
last-dotplot: chrX 83302574 83302647 +
last-dotplot:
last-dotplot: 102 0 699
last-dotplot:
last-dotplot: choosing bp per pixel...
last-dotplot: choosing bp per pixel...
last-dotplot: bp per pixel = 9
last-dotplot: width: 912
last-dotplot: height: 78
last-dotplot: processing alignments...
last-dotplot: reading annotations...
last-dotplot: drawing...
3966603009 3171
TEST -v --sort2=3 bs100.maf
last-dotplot: reading alignments...
last-dotplot: cutting...
last-dotplot: reading secondary alignments...
last-dotplot: cutting...
last-dotplot: sorting...
last-dotplot: chrM 0 16571
last-dotplot:
last-dotplot: 55 0 87
last-dotplot: 21 0 87
last-dotplot: 95 0 87
last-dotplot: 7 0 87
last-dotplot: 16 0 87
last-dotplot: 97 0 87
last-dotplot: 88 0 87
last-dotplot: 28 0 87
last-dotplot: 25 0 87
last-dotplot: 13 0 87
last-dotplot: 1 0 87
last-dotplot: 90 0 87
last-dotplot: 83 0 87
last-dotplot: 31 0 87
last-dotplot: 23 0 87
last-dotplot: 12 0 87
last-dotplot: 34 0 87
last-dotplot: 10 0 87
last-dotplot: 38 0 87
last-dotplot: 91 0 87
last-dotplot: 93 0 87
last-dotplot: 96 0 87
last-dotplot: 76 0 87
last-dotplot: 74 0 87
last-dotplot: 26 0 87
last-dotplot: 29 0 87
last-dotplot: 35 0 87
last-dotplot: 8 0 87
last-dotplot: 40 0 87
last-dotplot: 42 0 87
last-dotplot: 69 0 87
last-dotplot: 4 0 87
last-dotplot: 20 0 87
last-dotplot: 92 0 87
last-dotplot: 50 0 87
last-dotplot: 30 0 87
last-dotplot: 5 0 87
last-dotplot: 48 0 87
last-dotplot: 47 0 87
last-dotplot: 75 0 87
last-dotplot: 54 0 87
last-dotplot: 44 0 87
last-dotplot: 14 0 87
last-dotplot: 98 0 87
last-dotplot: 70 0 87
last-dotplot: 39 0 87
last-dotplot: 9 0 87
last-dotplot: 32 0 87
last-dotplot: 81 0 87
last-dotplot: 89 0 87
last-dotplot: 99 0 87
last-dotplot: 86 0 87
last-dotplot: 67 0 87
last-dotplot: 56 0 87
last-dotplot: 51 0 87
last-dotplot: 45 0 87
last-dotplot: 82 0 87
last-dotplot: 59 0 87
last-dotplot: 24 0 87
last-dotplot: 37 0 87
last-dotplot: 41 0 87
last-dotplot: 52 0 87
last-dotplot: 18 0 87
last-dotplot: 77 0 87
last-dotplot: 79 0 87
last-dotplot: 72 0 87
last-dotplot: 6 0 87
last-dotplot: 57 0 87
last-dotplot: 85 0 87
last-dotplot: 78 0 87
last-dotplot: 65 0 87
last-dotplot: 94 0 87
last-dotplot: 2 0 87
last-dotplot: 3 0 87
last-dotplot: 46 0 87
last-dotplot: 60 0 87
last-dotplot: 58 0 87
last-dotplot: 33 0 87
last-dotplot: 15 0 87
last-dotplot: 49 0 87
last-dotplot: 64 0 87
last-dotplot: 0 0 87
last-dotplot: 27 0 87
last-dotplot: 19 0 87
last-dotplot: 43 0 87
last-dotplot: 53 0 87
last-dotplot: 36 0 87
last-dotplot: 73 0 87
last-dotplot: 66 0 87
last-dotplot: 87 0 87
last-dotplot: 22 0 87
last-dotplot: 71 0 87
last-dotplot: 68 0 87
last-dotplot: 11 0 87
last-dotplot: 63 0 87
last-dotplot:
last-dotplot: choosing bp per pixel...
last-dotplot: choosing bp per pixel...
last-dotplot: bp per pixel = 17
last-dotplot: width: 975
last-dotplot: height: 664
last-dotplot: processing alignments...
last-dotplot: reading annotations...
last-dotplot: drawing...
833292477 18662
TEST -v -2? --sort2=0 --strands2=1 bs100.maf
last-dotplot: reading alignments...
last-dotplot: cutting...
last-dotplot: reading secondary alignments...
last-dotplot: cutting...
last-dotplot: sorting...
last-dotplot: chrM 0 1663
last-dotplot: chrM 4973 6206
last-dotplot: chrM 7868 8021
last-dotplot: chrM 11073 14033
last-dotplot:
last-dotplot: 0 0 87 -
last-dotplot: 1 0 87 +
last-dotplot: 2 0 87 +
last-dotplot: 3 0 87 -
last-dotplot: 4 0 87 +
last-dotplot: 5 0 87 -
last-dotplot: 6 0 87 +
last-dotplot: 7 0 87 -
last-dotplot: 8 0 87 +
last-dotplot: 9 0 87 +
last-dotplot:
last-dotplot: choosing bp per pixel...
last-dotplot: choosing bp per pixel...
last-dotplot: bp per pixel = 7
last-dotplot: width: 863
last-dotplot: height: 139
last-dotplot: processing alignments...
last-dotplot: reading annotations...
last-dotplot: drawing...
2996486939 3971
|
