File: RY4-6.seed

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# This DNA seeding scheme reduces run time and memory use, by only
# seeking seeds at ~1/4 of positions in each sequence [from Table 3 of
# MC Frith, L Noé, G Kucherov].

#lastal -m2

R  A G
Y  C T

RRRRRY
RRYRRY
RRYRYY
RYRRRR
RYRRRY
RYRYRY
RYYRRR
RYYRRY
RYYRYR
RYYRYY
RYYYRY
RYYYYY
YRYRRY
YYYRRR
YYYRRY
YYYYRY