File: YASS.seed

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# This DNA seeding scheme is good for finding long-and-weak
# similarities.  It is a good compromise for both protein-coding and
# non protein-coding DNA (L Noé & G Kucherov, NAR 2005 33:W540-W543).

1  A C G T
0  ACGT
T  AG CT

1T1001100101