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# LAST version 761
#
# a=14 b=3 A=19 B=3 e=110 d=90 x=109 y=44 z=109 D=10 E=1.70365e+07
# R=01 u=0 s=2 S=1 M=0 T=0 m=50 l=1 n=50 k=1 w=1000 t=4.43034 j=3 Q=0
# Reference sequences=195 normal letters=2934876451
# lambda=0.21715 K=0.343777
#
# A C G T
# A 6 -18 -8 -20
# C -20 6 -21 -12
# G -10 -21 6 -21
# T -21 -11 -20 6
# N 0 0 0 0
#
# a=14 b=3 A=19 B=3 e=110 d=90 x=109 y=44 z=109 D=10 E=1.70365e+07
# R=01 u=0 s=2 S=1 M=0 T=0 m=50 l=1 n=50 k=1 w=1000 t=4.43034 j=3 Q=0
# Reference sequences=195 normal letters=2934876451
# lambda=0.21715 K=0.343777
#
# A C G T
# A 6 -18 -8 -20
# C -20 6 -21 -12
# G -10 -21 6 -21
# T -21 -11 -20 6
# N 0 0 0 0
#
a score=138 EG2=3.3e+04 E=0.13
s chr3 23607556 23 + 198295559 ACGTTCTGGTTTATGTTTCCTTG
s 102 673 23 + 699 ACGTTCTGGTTTATGTTTCCTTG
a score=126 EG2=4.5e+05 E=1.8
s chr14 104715672 31 + 107043718 CTCCTGGCTGGCAGGACAGGCTGAGGTTGCT
s 102 479 29 + 699 ctcctgGCTGGCAGGGCAGGCTG-GG-TGCT
a score=125 EG2=5.6e+05 E=2.2
s chr2 240456631 25 + 242193529 TGGGCAGCCTGGATGGGTG--CACAGG
s 102 91 27 + 699 TGGGCAGCCTGGATGGGTGTCCACAGG
a score=124 EG2=7e+05 E=2.7
s chr11 67464146 23 + 135086622 CGGCTCCTGGCTGGCAAGGCAGG
s 102 476 23 + 699 cggctcctgGCTGGCAGGGCAGG
a score=121 EG2=1.3e+06 E=5.3
s chr1 21590630 52 + 248956422 TGGGAGCCACAGCAATCCTGGGGGATTCCTGTACTTGGCAGGGCAGGCTGGG
s 102 467 37 + 699 TGGGAgccacggc--tcctgG------C-------TGGCAGGGCAGGCTGGG
a score=120 EG2=1.7e+06 E=6.5
s chr10 122813034 26 + 133797422 GCCACGGCTCCTGGCTG-CAGAGCAGG
s 102 472 27 + 699 gccacggctcctgGCTGGCAGGGCAGG
a score=120 EG2=1.7e+06 E=6.5
s chr10 124281394 20 + 133797422 GGCACCGCCATCTTGGCCTC
s 102 618 20 + 699 GGCACCGCCATCTTGGCCTC
a score=119 EG2=2.1e+06 E=8.1
s chr1 161050905 38 + 248956422 TGCTGGGTTTACAGGCATGAGCCACGGCGCCTGGCTGG
s 102 458 32 + 699 TGCTGGGTTT---GG---GAgccacggctcctgGCTGG
a score=118 EG2=2.6e+06 E=10
s chr5 93489542 22 + 181538259 CGGTACCAAATCTGCAGTATTT
s 102 6 22 + 699 CGGTACCAGATCTGCAGTATTT
a score=118 EG2=2.6e+06 E=10
s chr14 80332129 27 + 107043718 CCTTCCCCAGGTATCTGTGTTGTTCAC
s 102 640 27 + 699 CCTTCCCCATGTATCTGCGTTGTTCAC
a score=118 EG2=2.6e+06 E=10
s chr15 45614749 24 + 101991189 TGGGAGCCACTGCTCCTGGCTGGC
s 102 467 24 + 699 TGGGAgccacggctcctgGCTGGC
a score=117 EG2=3.2e+06 E=13
s chr8 76840858 51 + 145138636 ATCCAGCTTGGCCACCAGCCACTTTACCTACCAGCGTGGCCTGG-TGCTGGG
s 102 425 40 + 699 ATCCAGCTTGGCCACC-GCCAC-------ACCAGC----CCCGGCTGCTGGG
a score=116 EG2=4e+06 E=16
s chr3 152862893 27 + 198295559 TAGGTGGGCAGCCTGGCATGAGGTGTC
s 102 87 25 + 699 TAGGTGGGCAGCCTGG-ATG-GGTGTC
a score=114 EG2=6.1e+06 E=24
s chr1 145870017 19 + 248956422 ATAGGAAtagtggtagtag
s 102 140 19 + 699 ATAGGAATAGTGGTAGTAG
a score=114 EG2=6.1e+06 E=24
s chr5 4867425 19 + 181538259 GCCACGGCTCCTGGCTGGC
s 102 472 19 + 699 gccacggctcctgGCTGGC
a score=114 EG2=6.1e+06 E=24
s chr5 74376577 19 + 181538259 ACCAGATCTGCAGTATTTT
s 102 10 19 + 699 ACCAGATCTGCAGTATTTT
a score=114 EG2=6.1e+06 E=24
s chr7 157969523 22 + 159345973 GGCAGGCTGGGTGCTGCCTGGG
s 102 493 22 + 699 GGCAGGCTGGGTGCTGCTTGGG
a score=114 EG2=6.1e+06 E=24
s chr13 113342215 19 + 114364328 GAGCCACGGCTCCTGGCTG
s 102 470 19 + 699 GAgccacggctcctgGCTG
a score=114 EG2=6.1e+06 E=24
s chr17 19079609 19 + 83257441 GAGCCACGGCTCCTGGCTG
s 102 470 19 + 699 GAgccacggctcctgGCTG
a score=114 EG2=6.1e+06 E=24
s chr17 19205791 19 + 83257441 GAGCCACGGCTCCTGGCTG
s 102 470 19 + 699 GAgccacggctcctgGCTG
a score=114 EG2=6.1e+06 E=24
s chr17 27793639 19 + 83257441 gcctgcacagcCGGGGCCC
s 102 546 19 + 699 GCCTGCACAGCCGGGGCCC
a score=114 EG2=6.1e+06 E=24
s chr18 8561208 37 + 80373285 GCTGGGATTACAGGTGGGAGCCACTGCTCCTGGCTGG
s 102 459 31 + 699 GCTGGG-TT-----TGGGAgccacggctcctgGCTGG
a score=114 EG2=6.1e+06 E=24
s chr21 14291180 29 + 46709983 CCTACTTACGTTCTGGTTGTCATGTTTCC
s 102 666 27 + 699 CCTGCTTACGTTCTGGTT-T-ATGTTTCC
a score=114 EG2=6.1e+06 E=24
s chr22 23657490 19 + 50818468 GAGCCACGGCTCCTGGCTG
s 102 470 19 + 699 GAgccacggctcctgGCTG
a score=114 EG2=6.1e+06 E=24
s chrX 83302601 19 + 156040895 GGTTTATGTTTCCTTGAGT
s 102 680 19 + 699 GGTTTATGTTTCCTTGAGT
a score=113 EG2=7.6e+06 E=30
s chr5 173701199 23 + 181538259 GCTTGGGCCATGGTGG--GCTCCTG
s 102 508 25 + 699 GCTTGGGCCATGGTGGCCGCTCCTG
a score=112 EG2=9.4e+06 E=37
s chr3 127741375 27 + 198295559 GCTGGATGCCAGGGCAGGCTGGGTGCT
s 102 485 23 + 699 GCTGG----CAGGGCAGGCTGGGTGCT
a score=112 EG2=9.4e+06 E=37
s chr4 3839062 21 + 190214555 TGGCCACCACCACACCAGCCC
s 102 433 21 + 699 TGGCCACCGCCACACCAGCCC
a score=112 EG2=9.4e+06 E=37
s chr18 55335092 21 + 80373285 AGTGTGCCGGCCACAATCATG
s 102 256 21 + 699 AGTGTGCCGGCCACGATCATG
a score=111 EG2=1.2e+07 E=46
s chr17 28925929 26 + 83257441 GTTTGAGAG----GGCTCCTGGCTGGCAGG
s 102 464 30 + 699 GTTTGGGAgccacggctcctgGCTGGCAGG
a score=110 EG2=1.5e+07 E=58
s chr3 186865651 21 + 198295559 CCACGCCAGCCCCGGCTGCTG
s 102 442 21 + 699 CCACACCAGCCCCGGCTGCTG
a score=110 EG2=1.5e+07 E=58
s chr5 169763615 29 + 181538259 TGGCAGGGCAGGCTGGACAGCTGCTGCTT
s 102 487 25 + 699 TGGCAGGGCAGGCTGG---G-TGCTGCTT
a score=110 EG2=1.5e+07 E=58
s chr7 65260306 21 + 159345973 CCACGCCAGCCCCGGCTGCTG
s 102 442 21 + 699 CCACACCAGCCCCGGCTGCTG
a score=110 EG2=1.5e+07 E=58
s chr19 47072201 36 + 58617616 CAGAGCCGAAGGTCATGGGCCCCAGACCAGGACTCC
s 102 371 32 + 699 CAG-GCCGAAGGTCATGGGCCACAG---AGAACTCC
a score=110 EG2=1.5e+07 E=58
s chr20 4034147 21 + 64444167 CCACGCCAGCCCCGGCTGCTG
s 102 442 21 + 699 CCACACCAGCCCCGGCTGCTG
a score=954 EG2=3.7e-73 E=1e-78
s chr19 1390855 197 + 58617616 GCCCGGCCTCCGCAGAGTTCTCTGTGGCCCATGACCTTCGGCCTGGCCTGCTGCGCCGTGGAGATGATGCACATGGCAGCACCCCGCTACGACATGGACCGCTTTGGCGTGGTCTTCCGCGCCAGCccgcgccagtccgACGTCATGATCGTGGCCGGCACACTCA---CCAACAAGATGGCCCCAGCGCTTCGCAAGGT
s 102 289 189 - 699 GCCCG----CCG--GAGTTCTCTGTGGCCCATGACCTTCGGCCTGGCCTGCTGCGCCGTGGAGATGATGCGCATGGCAGCACCCCGCTACGACATGGACCGC--CGGC--GGTCTTCCGCGCCAGCccgcgccagtccgACGTCATGATCGTGGCCGGCACACTCACCGCCAACAAGATGGCCCCAGCGC-TCGCAAGGT
a score=495 EG2=7.1e-30 E=2.5e-35
s chr19 1388829 109 + 58617616 CAGCACCCAGCCTGCCCTGCCAAAGGCCAG-AGCCGTGGCTCCCAAACCCAGCAGCCGGGGCGAGTATG-TGGTGGCCAAGCTGGATGACCTCGTCAACTGGGCCCGCCGG
s 102 190 108 - 699 CAGCACCCAGCCTGCCCTGCCA---GCCAGGAGCCGTGGCTCCCAAACccagcagccggggcTGGTGTGGCGGTGGCCAAGCTGGATGACCTCGTCAACTGGGCCCGCCGG
a score=321 EG2=1.8e-13 E=6.8e-19
s chr19 1388523 70 + 58617616 GCTCCAGCGTGGG-CCCGGCTGTGCAGGCACGAGGTGTCCATCAG-AGCGTGGCCACCGATGGCCCAAGCAG
s 102 124 69 - 699 GCTCCAGCGTGGGCCCCGGCTGTGCAGGCACGAGGTGTCCATCAGGAGC--GGCCACC-ATGGCCCAAGCAG
a score=320 EG2=2.3e-13 E=8.4e-19
s chr19 1393240 91 + 58617616 GCTGCGCCAACGGAGGAGGCTACTACCACTATTCCTACTCGGTGGTGAGGGGCTGCGACCGCATCGTGCCCGTGGACATCTACATCCCAGG
s 102 521 80 - 699 GCTGCGCCAACGGAGGAGGCTACTACCACTATTCCTA-TC---GGTGAGGCG----GACCGCATCGTGCCTGTGGACACC--CAT-CCAGG
a score=291 EG2=1.2e-10 E=4.6e-16
s chr19 1395387 97 + 58617616 CAGGCTGCCCACCTACGGCCGAGGCCCTGC-TCTACGGCATCCTGCAGCTGcaGAGGAAGATCAAG-CGGGAGCGG-------AGGCTGCAGATCTGGTACCGCAG
s 102 597 99 - 699 CAGGCTGCCCACCTACGGCCGAGGCCCTGCCTCTACGG--TCCCGCAGCCGTAG-TGAAGATC--GCCGGGAGCGACAAAAATA--CTGCAGATCTGGTACCGCAG
a score=237 EG2=1.5e-05 E=5.8e-11
s chr19 1391116 47 + 58617616 AGGTCTA-CGACCAGATGCCGGAGCCGCGCTACGTGGTCTCCATGGGG
s 102 474 47 - 699 AGGTCTAGCGACCAGATGCCGGAGCCGCGCTACGTGGT-TCCATGGGG
a score=215 EG2=0.0018 E=7e-09
s chr19 1387807 40 + 58617616 CAGCTCCTGGCCT--GCGCGGCTTCCGGATCCTTGGTCTGCG
s 102 83 42 - 699 CAGCTCCTGGCCTGCGCGCGGCTTCCGGATCCTTGGTCTGCG
a score=178 EG2=5.6 E=2.2e-05
s chr19 1383910 32 + 58617616 GAAGGCCGAGGCCAAGATGGCGGTGCTGTCAG
s 102 54 32 - 699 GAAGGCCGAGGCCAAGATGGCGGTGCCGTCAG
a score=133 EG2=9.9e+04 E=0.39
s chr7 101590379 41 + 159345973 CCACCACGGGACCAGAGCAGCACCCAGCCTGCC--GCCAGCCA
s 102 175 41 - 699 CCACCATGG-CCCA-AGCAGCACCCAGCCTGCCCTGCCAGCCA
a score=129 EG2=2.3e+05 E=0.92
s chr12 71544986 39 + 133275309 CCAGGCCAGGAGCCGTGGCTCACACCTGTAAACCCAGCA
s 102 209 32 - 699 CCA-GCCAGGAGCCGTGGCTC---CC---AAACccagca
a score=126 EG2=4.5e+05 E=1.8
s chr19 17615430 21 + 58617616 GGAAGGCCGAGGCCAAGATGG
s 102 53 21 - 699 GGAAGGCCGAGGCCAAGATGG
a score=124 EG2=7e+05 E=2.7
s chr19 18430559 29 + 58617616 ACCCAGCTGAGCTGCCCTGCCAGCCAGGA
s 102 194 25 - 699 ACCCAGC----CTGCCCTGCCAGCCAGGA
a score=121 EG2=1.3e+06 E=5.3
s chr8 98433261 30 + 145138636 CAGCACCTCTGTCAGCCTGCCCTGCCAGCC
s 102 190 25 - 699 CAGCACC-----CAGCCTGCCCTGCCAGCC
a score=120 EG2=1.7e+06 E=6.5
s chr4 54783704 36 + 190214555 AGCCAGGAGCTGTGGCTCCCAACTGCAATCCCAGCA
s 102 211 30 - 699 AGCCAGGAGCCGTGGCTCCCAA-----A-Cccagca
a score=119 EG2=2.1e+06 E=8.1
s chr3 130609408 26 + 198295559 GCAGCACTCAGCCTGCCCTTGCCAGC
s 102 189 25 - 699 GCAGCACCCAGCCTGCCCT-GCCAGC
a score=117 EG2=3.2e+06 E=13
s chr3 37588376 38 + 198295559 GCATGCGTG--TGTGGACACCCATCCAAGCTTCGTCCACC
s 102 573 37 - 699 GCAT-CGTGCCTGTGGACACCCATCCAGGCT--GCCCACC
a score=116 EG2=4e+06 E=16
s chr16 722483 30 + 90338345 GGATACCCATCCAGGCTGCCCCCGGACCTA
s 102 586 26 - 699 GGACACCCATCCAGGCTGCCC----ACCTA
a score=115 EG2=4.9e+06 E=19
s chr2 192414462 27 + 242193529 GGccacccatggccCAATCAGCACCCA
s 102 173 26 - 699 GGCCA-CCATGGCCCAAGCAGCACCCA
a score=115 EG2=4.9e+06 E=19
s chr7 101723245 41 + 159345973 GCCAGGCCAGGAGCCGTGGCTCATTCCTGTAATCCCAGCAG
s 102 208 34 - 699 GCCA-GCCAGGAGCCGTGGCTC---CC---AAACccagcag
a score=115 EG2=4.9e+06 E=19
s chr10 126932869 41 + 133797422 AGGCCAAGAACTGGGCCCAGTGTCACCGTCAGCTCCTGGCC
s 102 62 33 - 699 AGGCCAAGA--TGG---CGGTG---CCGTCAGCTCCTGGCC
a score=115 EG2=4.9e+06 E=19
s chr22 20726588 29 + 50818468 CCCAACCCTACGGCCCAggccctgcctct
s 102 604 27 - 699 CCCA--CCTACGGCCGAGGCCCTGCCTCT
a score=115 EG2=4.9e+06 E=19
s chr22 46458800 22 + 50818468 CAGATACATGGGAAAGGCCGAG
s 102 42 22 - 699 CAGATACATGGGGAAGGCCGAG
a score=114 EG2=6.1e+06 E=24
s chr3 89815479 19 + 198295559 CCATGGCCCAAGCAGCACC
s 102 178 19 - 699 CCATGGCCCAAGCAGCACC
a score=114 EG2=6.1e+06 E=24
s chr5 171574454 19 + 181538259 GGCTCCCAAACCCAGCAGC
s 102 224 19 - 699 GGCTCCCAAACccagcagc
a score=114 EG2=6.1e+06 E=24
s chr6 1842831 19 + 170805979 CAGCCAGGAGCCGTGGCTC
s 102 210 19 - 699 CAGCCAGGAGCCGTGGCTC
a score=114 EG2=6.1e+06 E=24
s chr7 100370596 19 + 159345973 CAGCCAGGAGCCGTGGCTC
s 102 210 19 - 699 CAGCCAGGAGCCGTGGCTC
a score=114 EG2=6.1e+06 E=24
s chr12 19357535 19 + 133275309 GCACCCAGCCTGCCCTGCC
s 102 192 19 - 699 GCACCCAGCCTGCCCTGCC
a score=114 EG2=6.1e+06 E=24
s chr17 19172450 19 + 83257441 CAGCCAGGAGCCGTGGCTC
s 102 210 19 - 699 CAGCCAGGAGCCGTGGCTC
a score=114 EG2=6.1e+06 E=24
s chr17 29190069 19 + 83257441 GCCCTGCCAGCCAGGAGCC
s 102 203 19 - 699 GCCCTGCCAGCCAGGAGCC
a score=114 EG2=6.1e+06 E=24
s chr17 58670490 19 + 83257441 CAGCCAGGAGCCGTGGCTC
s 102 210 19 - 699 CAGCCAGGAGCCGTGGCTC
a score=114 EG2=6.1e+06 E=24
s chr20 17684744 19 + 64444167 GTGCCTGTGGACACCCATC
s 102 578 19 - 699 GTGCCTGTGGACACCCATC
a score=114 EG2=6.1e+06 E=24
s chr21 43027934 19 + 46709983 CCAGCCTGCCCTGCCAGCC
s 102 196 19 - 699 CCAGCCTGCCCTGCCAGCC
a score=114 EG2=6.1e+06 E=24
s chrX 39928416 19 + 156040895 CAGCCAGGAGCCGTGGCTC
s 102 210 19 - 699 CAGCCAGGAGCCGTGGCTC
a score=112 EG2=9.4e+06 E=37
s chr3 33026624 24 + 198295559 GGCCGCCATGGTCCAAGCAGCACC
s 102 173 24 - 699 GGCCACCATGGCCCAAGCAGCACC
a score=111 EG2=1.2e+07 E=46
s chr5 177958541 23 + 181538259 GCCCCGGCTGTGGAGGCACGAGG
s 102 136 23 - 699 GCCCCGGCTGTGCAGGCACGAGG
a score=110 EG2=1.5e+07 E=58
s chr1 155997873 40 + 248956422 CCACCATG-CCCA-GCCTGGGCAcccagcctgcccagccagc
s 102 175 39 - 699 CCACCATGGCCCAAGC---AGCACCCAGCCTGCCCTGCCAGC
a score=110 EG2=1.5e+07 E=58
s chr6 65786101 23 + 170805979 AAGATGGCCCCAGTGCTCGTAAG
s 102 453 23 - 699 AAGATGGCCCCAGCGCTCGCAAG
a score=110 EG2=1.5e+07 E=58
s chr6 170257701 26 + 170805979 AGCACCCAGCCTGCCCTTGTCCAGCC
s 102 191 24 - 699 AGCACCCAGCCTGCCCT-G-CCAGCC
a score=110 EG2=1.5e+07 E=58
s chr15 78230485 25 + 101991189 CAGGAGCAGCCACCATGGCCACAAG
s 102 166 24 - 699 CAGGAGCGGCCACCATGGCC-CAAG
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