File: last-test.out

package info (click to toggle)
last-align 1651-1
links: PTS, VCS
area: main
in suites: forky, sid
size: 14,688 kB
sloc: cpp: 44,419; python: 5,217; ansic: 1,938; sh: 710; makefile: 457
file content (7440 lines) | stat: -rw-r--r-- 703,340 bytes
#
# a=24 b=1 A=24 B=1 e=1 d=1 x=0 y=0 z=0 D=1e+06 E=1.89003e+17
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.3815 j=3 Q=0
# /tmp/last-test
# Reference sequences=0 normal letters=0
# lambda=0.238888 K=0.240003
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   4  -6  -2  -7   2  -4  -4   1   2  -7  -5   1   0   1
# C  -6   5  -6  -2   2   2  -3  -4  -6   2   1  -4   1   0
# G  -2  -6   5  -6  -3   2   2  -4   2  -6   0   1  -4   1
# T  -7  -2  -6   4  -4  -4   2   1  -7   2   1   0   1  -5
# M   2   2  -3  -4   2   0  -4   0   0  -1  -1  -1   0   1
# S  -4   2   2  -4   0   2   0  -4   0   0   1  -1  -1   1
# K  -4  -3   2   2  -4   0   2   0  -1   0   1   0  -1  -1
# W   1  -4  -4   1   0  -4   0   1   0   0  -1   0   0  -1
# R   2  -6   2  -7   0   0  -1   0   2  -6  -2   1  -1   1
# Y  -7   2  -6   2  -1   0   0   0  -6   2   1  -1   1  -2
# B  -5   1   0   1  -1   1   1  -1  -2   1   1  -1   0  -1
# D   1  -4   1   0  -1  -1   0   0   1  -1  -1   0   0   0
# H   0   1  -4   1   0  -1  -1   0  -1   1   0   0   0  -1
# V   1   0   1  -5   1   1  -1  -1   1  -2  -1   0  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# Query sequences=0 normal letters=0
TEST lastal -fMAF -u1 -j5 -p ../data/HOXD70.mat -z3400 -e2500 /tmp/last-test galGal3-M-32.fa
#
# a=400 b=30 A=400 B=30 e=2500 d=1311 x=3400 y=962 z=3400 D=1e+06 E=2.80488e+07
# R=10 u=1 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=96.1735 g=1 j=5 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.00944633 K=0.095059
#
#     A   C   G   T   N   M   S   K   W   R   Y   B   D   H   V
# A  91 -114 -31 -123 -100  40 -64 -69  34  52 -119 -81  19   8  22
# C -114 100 -125 -31 -100  38  42 -64 -64 -119  52  22 -79  19   9
# G -31 -125 100 -114 -100 -64  42  38 -64  52 -119   9  19 -79  22
# T -123 -31 -114  91 -100 -69 -64  40  34 -119  52  22   8  19 -81
# N -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100
# M  40  38 -64 -69 -100  39   0 -67   0   4  -4 -20 -16  13  16
# S -64  42  42 -64 -100   0  42   0 -64   0   0  16 -18 -18  16
# K -69 -64  38  40 -100 -67   0  39   0  -4   4  16  13 -16 -20
# W  34 -64 -64  34 -100   0 -64   0  34   0   0 -16  13  13 -16
# R  52 -119  52 -119 -100   4   0  -4   0  52 -119 -29  19 -24  22
# Y -119  52 -119  52 -100  -4   0   4   0 -119  52  22 -24  19 -29
# B -81  22   9  22 -100 -20  16  16 -16 -29  22  18  -8  -3 -10
# D  19 -79  19   8 -100 -16 -18  13  13  19 -24  -8  15  -7  -3
# H   8  19 -79  19 -100  13 -18 -16  13 -24  19  -3  -7  15  -8
# V  22   9  22 -81 -100  16  16 -20 -16  22 -29 -10  -3  -8  18
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=1595915 EG=0 E=0 fullScore=1.6e+06
s chrM 0 16775 + 16775 AATTTTATTTTTTAACCTAACTCCCCTACTAAGTGTACCCCCCCTTTCCCCAGGGGGGGTATACTATGCATAATCGTGCATACATTTATATACCACATATATTATGGTACCGGTAATATATACTATATATGTACTAAACCCATTATATGTATACGGGCATTAACCTATATTCCACATTTCTCCCAATGTCCATTCTATGCATGATCTAGGACATACTCATTTACCCTCCCCATAGACAGTTCCAAACCACTATCAAGCCACCTAACTATGAATGGTTACAGGACATAAATCTCACTCTCATGTTCTCCCCCCAACAAGTCACCTAACTATGAATGGTTACAGGACATACATTTAACTACCATGTTCTAACCCATTTGGTTATGCTCGCCGTATCAGATGGATTTATTGATCGTCCACCTCACGAGAGATCAGCAACCCCTGCCTGTAATGTACTTCATGACCAGTCTCAGGCCCATTCTTTCCCCCTACACCCCTCGCCCTACTTGCCTTCCACCGTACCTCTGGTTCCTCGGTCAGGCACATCCCATGCATAACTCCTGAACTTTCTCACTTTTCACGAAGTCATCTGTGGATTATCTTCCCCTCTTTAGTCCGTGATCGCGGCATCTTCTCTCTTCTATTGCTGTTGGTTCCTTCTCTTTTTGGGGCTTCTTCACAGGTTACCCTTCACAGTGCGGGTGCGAGTGCTATTCAAGTGAAGCCTGGACTACACCTGCGTTGCGTCCTATCCTAGTCCTCTCGTGTCCCTCGATGAGACGGTTTGCGTGTATGGGGAATCATCTTGACACTGATGCACTTTGGATCGCATTTGGTTATGGTTCTTCCACCCCCCCGGTAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATTTTCACTTCCTCTATTTTCTTCACAAAACTAGGAAATTCACCACAAttttttctttgttattttttaattttttttttattttttAAAAACATTTTTTAAAAAACTAAATTACATACAAACTACCGCATAAAATCCCTCAAACTATACAAACGTTTATCGTATAATATATATACATTATTGTTTATTCTATCATTATTAGAGAAACTCCACTACCAAAACCATCATTAAAACAAAAATTTACATGCCACTTAACTCCCCTCACAAACAATCGTTATTTATATTGTTAATTAGCAAACACAAAACCCGCCTTCTACCACTATAAAGCCCCCATAGCTTAACCCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAAAGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAACCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAGCTAAGATTAAAATGCAACCAAGCTGTCATAAGCCTAAGATCCACCTAAACCCAACCCAAATCCATCTTAGCCTCAACGATTAATTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCCATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGAGAAATGGGCTACATTTTCTAACATAGAACAAACGAAAAAGGATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTTCACAAGCCATCAACATCAATAAATATATACTTCCCCTCCCGGCTAAAGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACTACCAAGGCGTAGCTATAACTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACAAGGTCGCCTTGACTTGCCCCCCCTCTAGCCCGACAAACTCGTACCCTTAACATAAAAAACTTACCTCCCCCTCTTAACCAAAACATTATAAATTGTCCCAGTATAGGCGATAGAAAAGACTACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTGTCAAACGAATCTAAGTTCCCCCTTAACCCACCCCCTAAAGACACCCACCTTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAAAAGAACACAACCTCCTCCAGCGGATAATAATCACCCCTCCCCGCACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTCCCTCATTAAAAAATCTAAAACCCTATTTGACTCCCTCAACCAAAGCAGGTTAACCTATGACAATAGAAGAATCAATGCTAAAATGAGTAATCTGGAACCTATCCTCCTACGGCGTAAACTTACATTAATACATTATTAACAGAACTCAACTTATACCCCCACACTAACAAGCAATACGTATTCCTCAATCTGTTAAGCCAACCCAGGAGCGCCCACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCTTACAACCTTACACAGCCCCACTGGGTCCACCCACACATAAACCCCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAACCCACAGACCACAACTCTTCACTAAGACCAACTCCTCAAAGTACCAACAGTAACCAGACCCAATATAATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAAGGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTGCCCACCCTAACAAACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTCCCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTCCCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAACAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAATTTTAGTTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTACAGACCCCGGCACACTTTAGTGTACATCAACGAGTTTGCAACTCATTATGAACTTCACTACAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACTCAGCCATCTTACCTGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGCTGGGGCCGGCACAGGATGGACAGTTTACCCCCCTTTAGCCGGCAACCTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTTTCATTACTTAGCAGGTGTTTCCTCCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTGTCACAATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAGCAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACCATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGATATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTAACCTAACCTTTTTCCCCCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACTCATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTACAAGTGCAAGAAAGGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCAATTACATAGACCTGTCAAGACTAAATCACAGGTGCAAACCCTGTACATCTCATATGGCCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATCAAACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTGCCCTCCCCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGAATACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACCTCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGGGTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTACTGTCATCTTAACCATTAAGAAGCTATGCACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACCCTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTCTCCATCATACTCCTAACTTGATTCACCTTCTCTCTGCTTATCCAACCCAAACTTCTTTCATTCACTCTAACAAACAACCCTGCAAACAAAATTACAACAACTAAACCCACCCCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTTATCTCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCCCTAACGGCACTCATCCTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCACACCAAGCACACTCCTACCACATAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGGCCTAATCATATGGTTCCACTACAGCTCGACCACCCTACTGACAATAGGCCTCCTCTCTATACTTCTAGTCATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCCACCACACCCCAACTGTCCAAAAGGGCCTACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTTCCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAAACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTACATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGGTTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGTAGACATCATCTGACTCTTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCTAGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTATCAACCCAGAGAAGAGCAATGAACACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAAACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAATCGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACACCCTATAATAACCCTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGAACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAACTAAGACAGCTGGTTTCGACCCAGCAAATTATAGACCCACCTATAACTTTCTTATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCATAATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGAAAACCAAACCCCATCATTCGCCCTTGTACCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATCATCCTACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAACCCTAACCCTCTGAACAGGCATAGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATCACCAAAACCATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATACCTGAGCCCTCTCACTTACACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTATCCTAGCCCTAGAACTCTCAAGCCTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTCATAAACTTCTCCTCCTCCCTAGGCTACTTTAACCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGGCCCCGAAGGCCTTGCCAACCTTCATCTCACCATAACCAAAATCTCAACCACACTCCACACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTACAACGATCCTACTTATCCAAAAATAAACTAATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAAATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATTAGCAGTCTGCCTCATGACCCAAATCCTCACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAGCCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTACTCTCTGAAACCCTTAAACCGCCCGAATTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATCAACAGTAACCACCCCCACCTTTCAAAAATCAACGAGCCCTCCCAGAACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCAGGATAAGGATCCGCAGCTAATGACACAGAATAAACAAAAACCACCAACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAACACCCAAACTCACTAACCACCCACATCCTATCACAGACGCTACCACCAACCCCACCACCCCATAATACGGCGAAGGATTAGACGCCACAGCTAAAACCCCCAGCATAAAACAAATCCCAAGAAAAATCACAAAATAAGTCATATTATTCCCGCTTGGTTAGACCCCAAGGACTACGGCTTGAAAAGCCATTGTTGTTCTCAACTACGGGAAC
s chrM 0 16775 + 16775 AATTTTATTTTTTAACCTAACTCCCCTACTAAGTGTACCCCCCCTTTCCCCAGGGGGGGTATACTATGCATAATCGTGCATACATTTATATACCACATATATTATGGTACCGGTAATATATACTATATATGTACTAAACCCATTATATGTATACGGGCATTAACCTATATTCCACATTTCTCCCAATGTCCATTCTATGCATGATCTAGGACATACTCATTTACCCTCCCCATAGACAGTTCCAAACCACTATCAAGCCACCTAACTATGAATGGTTACAGGACATAAATCTCACTCTCATGTTCTCCCCCCAACAAGTCACCTAACTATGAATGGTTACAGGACATACATTTAACTACCATGTTCTAACCCATTTGGTTATGCTCGCCGTATCAGATGGATTTATTGATCGTCCACCTCACGAGAGATCAGCAACCCCTGCCTGTAATGTACTTCATGACCAGTCTCAGGCCCATTCTTTCCCCCTACACCCCTCGCCCTACTTGCCTTCCACCGTACCTCTGGTTCCTCGGTCAGGCACATCCCATGCATAACTCCTGAACTTTCTCACTTTTCACGAAGTCATCTGTGGATTATCTTCCCCTCTTTAGTCCGTGATCGCGGCATCTTCTCTCTTCTATTGCTGTTGGTTCCTTCTCTTTTTGGGGCTTCTTCACAGGTTACCCTTCACAGTGCGGGTGCGAGTGCTATTCAAGTGAAGCCTGGACTACACCTGCGTTGCGTCCTATCCTAGTCCTCTCGTGTCCCTCGATGAGACGGTTTGCGTGTATGGGGAATCATCTTGACACTGATGCACTTTGGATCGCATTTGGTTATGGTTCTTCCACCCCCCCGGTAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATTTTCACTTCCTCTATTTTCTTCACAAAACTAGGAAATTCACCACAAttttttctttgttattttttaattttttttttattttttAAAAACATTTTTTAAAAAACTAAATTACATACAAACTACCGCATAAAATCCCTCAAACTATACAAACGTTTATCGTATAATATATATACATTATTGTTTATTCTATCATTATTAGAGAAACTCCACTACCAAAACCATCATTAAAACAAAAATTTACATGCCACTTAACTCCCCTCACAAACAATCGTTATTTATATTGTTAATTAGCAAACACAAAACCCGCCTTCTACCACTATAAAGCCCCCATAGCTTAACCCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAAAGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAACCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAGCTAAGATTAAAATGCAACCAAGCTGTCATAAGCCTAAGATCCACCTAAACCCAACCCAAATCCATCTTAGCCTCAACGATTAATTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCCATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGAGAAATGGGCTACATTTTCTAACATAGAACAAACGAAAAAGGATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTTCACAAGCCATCAACATCAATAAATATATACTTCCCCTCCCGGCTAAAGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACTACCAAGGCGTAGCTATAACTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACAAGGTCGCCTTGACTTGCCCCCCCTCTAGCCCGACAAACTCGTACCCTTAACATAAAAAACTTACCTCCCCCTCTTAACCAAAACATTATAAATTGTCCCAGTATAGGCGATAGAAAAGACTACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTGTCAAACGAATCTAAGTTCCCCCTTAACCCACCCCCTAAAGACACCCACCTTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAAAAGAACACAACCTCCTCCAGCGGATAATAATCACCCCTCCCCGCACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTCCCTCATTAAAAAATCTAAAACCCTATTTGACTCCCTCAACCAAAGCAGGTTAACCTATGACAATAGAAGAATCAATGCTAAAATGAGTAATCTGGAACCTATCCTCCTACGGCGTAAACTTACATTAATACATTATTAACAGAACTCAACTTATACCCCCACACTAACAAGCAATACGTATTCCTCAATCTGTTAAGCCAACCCAGGAGCGCCCACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCTTACAACCTTACACAGCCCCACTGGGTCCACCCACACATAAACCCCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAACCCACAGACCACAACTCTTCACTAAGACCAACTCCTCAAAGTACCAACAGTAACCAGACCCAATATAATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAAGGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTGCCCACCCTAACAAACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTCCCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTCCCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAACAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAATTTTAGTTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTACAGACCCCGGCACACTTTAGTGTACATCAACGAGTTTGCAACTCATTATGAACTTCACTACAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACTCAGCCATCTTACCTGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGCTGGGGCCGGCACAGGATGGACAGTTTACCCCCCTTTAGCCGGCAACCTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTTTCATTACTTAGCAGGTGTTTCCTCCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTGTCACAATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAGCAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACCATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGATATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTAACCTAACCTTTTTCCCCCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACTCATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTACAAGTGCAAGAAAGGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCAATTACATAGACCTGTCAAGACTAAATCACAGGTGCAAACCCTGTACATCTCATATGGCCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATCAAACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTGCCCTCCCCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGAATACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACCTCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGGGTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTACTGTCATCTTAACCATTAAGAAGCTATGCACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACCCTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTCTCCATCATACTCCTAACTTGATTCACCTTCTCTCTGCTTATCCAACCCAAACTTCTTTCATTCACTCTAACAAACAACCCTGCAAACAAAATTACAACAACTAAACCCACCCCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTTATCTCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCCCTAACGGCACTCATCCTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCACACCAAGCACACTCCTACCACATAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGGCCTAATCATATGGTTCCACTACAGCTCGACCACCCTACTGACAATAGGCCTCCTCTCTATACTTCTAGTCATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCCACCACACCCCAACTGTCCAAAAGGGCCTACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTTCCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAAACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTACATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGGTTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGTAGACATCATCTGACTCTTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCTAGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTATCAACCCAGAGAAGAGCAATGAACACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAAACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAATCGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACACCCTATAATAACCCTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGAACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAACTAAGACAGCTGGTTTCGACCCAGCAAATTATAGACCCACCTATAACTTTCTTATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCATAATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGAAAACCAAACCCCATCATTCGCCCTTGTACCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATCATCCTACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAACCCTAACCCTCTGAACAGGCATAGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATCACCAAAACCATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATACCTGAGCCCTCTCACTTACACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTATCCTAGCCCTAGAACTCTCAAGCCTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTCATAAACTTCTCCTCCTCCCTAGGCTACTTTAACCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGGCCCCGAAGGCCTTGCCAACCTTCATCTCACCATAACCAAAATCTCAACCACACTCCACACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTACAACGATCCTACTTATCCAAAAATAAACTAATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAAATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATTAGCAGTCTGCCTCATGACCCAAATCCTCACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAGCCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTACTCTCTGAAACCCTTAAACCGCCCGAATTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATCAACAGTAACCACCCCCACCTTTCAAAAATCAACGAGCCCTCCCAGAACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCAGGATAAGGATCCGCAGCTAATGACACAGAATAAACAAAAACCACCAACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAACACCCAAACTCACTAACCACCCACATCCTATCACAGACGCTACCACCAACCCCACCACCCCATAATACGGCGAAGGATTAGACGCCACAGCTAAAACCCCCAGCATAAAACAAATCCCAAGAAAAATCACAAAATAAGTCATATTATTCCCGCTTGGTTAGACCCCAAGGACTACGGCTTGAAAAGCCATTGTTGTTCTCAACTACGGGAAC
p                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~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a score=2931 EG=3.2 E=5.3e-05 fullScore=1.53e+04
s chrM 11454 1544 + 16775 CTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATC--------ATCCTACCAACAATCATACTCTTGCCCACAG------------------------CCCTCTTATCCCCAGCAAAATCC-----ATATGAACTAACA------CCACAATATACA----------------GCCTTCTAATCGCCTCG------ATCAGCCTACACTGACTAACCCCATCATACTACCCCAC--------------------------------AAAAACCCTA---------ACCCTCTGAACAGGCATAGA--------------CCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGC---------------------------------------------------------------TAGCCAAGGCCACCT---------ACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCATTTACCTTCTAT---TCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATC------------------------------------------------------------------------------------------------------------TAGCCTAGCTCTCCTAAT----AGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCAT-GTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCC------------------------------------------------------------------------------------------CTATG---AGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACA----------------------------------GACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAA--------------CCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTA--------------------------------------------------TTCTGCCTAGCAAA----CACAAACTACGAACGGACAC---------------ACAGCCGCATTCTTATCCTGA--------------CACGAGGCCTCCAACC--------------------CCTCCT-----ACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCA------------------------------------------------ACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAA---------------------------------CTGATCCTCCCCCACAA---------TTATCTTAACCGGCAC-------TGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCA---------------ACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGA--------------------------------GAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACAC-----------------------------------------------------------------TCATCCTCAAACCAGAACTAATCTCA---------------GGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATA----------------------------------------------------GGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGC----------------------CCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCT---------------------TTAAACCTCAGTCCCCTT
s chrM 13088 1539 + 16775 CTTAACACCCTCACAACATTAA---------------------CACTACTCACCC---------------------------TCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACT--CCCCCATAT---------CCATCAC-----------CAAAACCATTAAAACCGCC--------------TTCCTAATCAGCCTA-----------------------------ATCCCAACAACAATCTTCATCCACTCAGGGGCAGAA------AGCATTGCCACCCACTGAG----------AATGACAATTTATCCCCAACTTCA--------------------------------------------------AGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATC-TTAGAGTTCGCAACATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAA-----------TAATCTACAACCGAAT------------------------------------------------------------------------------------------------------------------------CGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAA----------TCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGC----AATAGAAGGCCCAACCCCTGTCTCCGCCCTACTC------------------------------------------------------------------------------------------------------CATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAAC-------------------------ACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAAT-----------TGGCCTAGACCTCCCCCAACTAGCCT-----------------------------------------------------TCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAAT---TATCCACAGCC-------------TCAATGGAGAACAAGACATCCGCA------------AAATAGGATGTCTACA--------------AAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCA-------------------------------------------------------ACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGAT---------------------------------CATCGAAAACCTAAACACCTCATACATCAATACCTGAG------------CCCTCTCACTTA-------------CACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATA--------------ACCTTACTAGTCCAAACAGGACAC-------------------------------------------ACACGAACCCCCAGCAATCACCCCATTAACGAAAACA--------------------------------------CCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCC--------------------CTAATCCTCCCCCCTAAAACCCCTCC-----------------------------------------------AATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGG--------------------------------AATTATCCTAGCCCTAGAACTCTCAAGC--------------------------------CTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTC
p                         $%&&'())))))))))(&&%%$"#$$$$########$%&%$"!!!!!!!!!$$$$!!!!!!!!!!!!!!!!!!!!!!!$%(&!!!!!!!!!!!!!!!!!!!!!!!!$&(((((('&''''&&&&&%$!!#$$#"%%%$##"!!!!!!!!!!!!$!!!!!""""""!!!!!!"""""!!!!!$$$!!!"""""#"""""!!""!!%%&&&&&%$""""""!!!!!!!!!!!""#"""!!!!!!""""!!!!!"!"""!!!!!!!!!!""#&'&%"$$$$!!!!!!!""""###"%&'''(('&$!!!!!!!!!!""#""""#$$""""$$$$$$$$$$!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!"##""!!"#"""""###%&&%$$%&%$#""!!!!!""""!"!!!!!!!!!!!"""""!!!!!!$$$%%%%%%&&&%%!"%&''''&%$(**++*)'!"""!!!!!!!!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!"""!!!!!""!"""!!!!!!!!!""#""!!!!!!!!!!!!!!!!!"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!"!!!!!!!""""!!!!!""""!!"""""""""""!!!!"""######"""""""!!!!!!!!"""""""!!!!!!!!!!!!!!"!!"""""""""!!!!!!!!""""""""""""!!!!!!!!!!!!"##$$$$$$####""""""""!!!!!!"!!!!!!!!!!!!!!""#""""""""""###"""""""!!!!!!!!!!!!!""""""!%&&&&%$"###$$%$#""!!!$$$%%%%%%%%$$!!!!""!!!!!!!"!!!!!!"""""""""""""""""###""!!!""""""!!""""""!""""""""$$""""!!"#"!!!!!!!!"#""""""""#"!!!"#&(*)**(&%&&&&&%$""#$$$$#""""!!!!!!!!"#$%$$#$$####"!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!!!!!!!!$%&'''&%#$##$$$%%#!!!!%''((((,-..,+,,,**))*+,,/102676898<>>=<@@?;52,,*&%%%%$#$%$!$')******++++++********))((((('&$##"""!!!!!!""#""""#"""####$##"""""!!!!"""""""""""####$%$%%%$#"""""""""##$$$##"""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!"##"""""#$$$%%$#""!!!""##$$$$$$"$%%%$'&%(,./////.,*))('""!!!!!!!!!!!!!!!!!!!!!!"!!!""""##$%&&%%$#######"""""!!!!!!&''&&%%%%%%&(~~~~~~~~~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

a score=2931 EG=3.2 E=5.3e-05 fullScore=1.53e+04
s chrM 13088 1539 + 16775 CTTAACACCCTCACAACATTAACACTACTC---------------------ACCCTCCTTACCCCTATTATCCTTCCCC---------------------------CCCTCCTAAATCTAAAAAACTCCCCC--ATATCCATCA---------CCAAAACCATTAAAACC-----------GCCTTCCTA--------------ATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGC-----------------------------AGAAAGCATTGCC------ACCCACTGAGAATGACAATTTATC----------CCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTG--------------------------------------------------TAACCTGATCCATCTTAGAGTTC-GCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCAATAA-----------TCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCT------------------------------------------------------------------------------------------------------------------------TGGCCTAATCCT----------AGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCA----ATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGC------------------------------------------------------------------------------------------------------CTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAAC-------------------------GACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCC-----------CCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGC-----------------------------------------------------TCCGGCCTAATTATC---CACAGCCTCAATGGAGAACAAG-------------ACATCCGCAAAATAGGATGTCTA------------CAAAAAACCCTCCCAATAACCA--------------CCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAG-------------------------------------------------------ACCTGATCATCGAAAACCTAAACACCTCATACATCAATAC---------------------------------CTGAGCCCTCTCAC------------TTACACTACT-------------TGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAA--------------ACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGA-------------------------------------------AAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATC--------------------------------------TCATCCCTAATCCTCCCCCCT--------------------AAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTA-----------------------------------------------GGAATTATCCTAGCCCTAGAACTC--------------------------------TCAAGCCTATCATACTCCCTCACTCCC--------------------------------CCAAAACACAATCCCCTC
s chrM 11454 1544 + 16775 CTGACCACCTACACAACCTAAA--------CCTTCTACAATGCTAAAGATCATCC------------------------TACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAAT-----CCATAT------GAACTAACAC----------------CACAATATACAGCC------TTCTAATCGCCTCGATCAGCCTA--------------------------------CACTGACTAACCCCATCATACTACCCCACAAAA---------ACCCTAACCCTCTGAA--------------CAGGCATAGACCAAATCTCA---------------------------------------------------------------ACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACC---------TACAACATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCAT---TTACCTTCTATTCTATACCCTAAT------------------------------------------------------------------------------------------------------------TAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAG----CTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGC-CCATGTAGAAGCACCAATCGCAGGCTCCATACTACTC------------------------------------------------------------------------------------------GCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATG---AGGTGCCCTAATAAC----------------------------------TAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAG--------------TATAATCCAAACCCAATGATCAT--------------------------------------------------TCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGC----AAACACAAAC---------------TACGAACGGACACACAGCCGCA--------------TTCTTATCCTGACA--------------------CGAGGCCTCCAACCCCTCCT-----ACCATTGATA------------------------------------------------TCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGAT---------------------------------AGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGAT---------CCTCCCCCACAATTA-------TCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATA---------------CTACTCTCAACCCAACGAGGCAC--------------------------------TCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACA-----------------------------------------------------------------TCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCC---------------TCAAACCAGAACTAATCTCAGGAACCCCTCT----------------------------------------------------ATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGG----------------------AGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGC---------------------CAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTT
p                         $%&&'())))))))))(&&%%$!!!!!!!!"#$$$$########$%&%$"!$$$$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!$%(&$&(((((('&''''&&&&&%$#$$#"!!%%%$!!!!!!##"!!!!!!$!!!!!!"""""!!!!!!!!!!""""""$$$!!""!!!!!"""""#"""""%%&&&&&%$""""!!!!!"!"""!!!!!!!!!!""#&'&%"""""""!!!!!!!!!!!""#"""!!!!!!$$$$!""""###"!!!!!!%&'''(('&$""#""""#$$""""!!!!!!!!!!$$$$$$$$$$"##""!!"#"""""###%&&%$$%&%$#""!!!!!""""!"!!!!!!!!!!!"""""!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!$$$%%%%%%&&&%%"%&''''&%!$(**++*)'"""""""""""!!!!"""######"""""""!!!!!!!!"""""""!!!!!!!!!!!!!!"!!"""""""""!!!!!!!!""""""""""""!!!!!!!!!!!!"##$$$$$$####""""""""!!!!!!"!!!!!!!!!!!!!!""#""""""""""###"""""""!!!!!!!!!!!!!""""""!!"""!!!!!!!!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!"""!!!!!""!"""!!!!!!!!!""#""!!!!!!!!!!!!!!!!!"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!"!!!!!!!""""!!!!!""""!!%&&&&%$!!!"###$$%$#""$$$%%%%%%%%$$""#$$$$#""""!!!!!!!!"#$%$$#$$####"!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!!!!!!!!!!!!""!!!!!!!"!!!!!!"""""""""""""""""###""!!!""""""!!""""""!""""""""$$""""!!"#"!!!!!!!!"#""""""""#"!!!"#&(*)**(&%&&&&&%$$%&'''&%!!!!#$##$$$%%#%''((((,-..,+,,,**))*+,,/102676898<>>=<@@?;52,,*&%%%%$!#$%$$')******++++++********))((((('&$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!"##"""""#$$$%%$#""!!!""##$$$$$$"##"""!!!!!!""#""""#"""####$##"""""!!!!"""""""""""####$%$%%%$#"""""""""##$$$##"""""!!!!!!!!!!!!!!!!!!!!$%%%$'&%(,./////.,*))('!!!""""##$%&&%%$#######"""""!!!!!!""!!!!!!!!!!!!!!!!!!!!!!"&''&&%%%%%%&(~~~~~~~~~541.,+,,,-38<<:510346763-******))))))('$"""""!!!!!"""""""!!!!!!!!$%&&&%%%$$$$!!!!!!!!!!!!""""!!!!!!""""""#$###""""""""!!!!!""""!!""$%&%%$$$$$#""!!!!""""!!!!!!!!""""""!!!!!!!!!!!!!!$$$%'((('%$"!""!!!$%%%$$$"""!!!!!"""""""!"""!!!!!!!!!%''')))(%"##"#$##""!!!!!""""""""""!$$!""!!!!!"""#$%&$##"#!!!!!!!!!!!!!!$$%$$$$$$%%$&')*)(&%$##$"""""""!!!!"""####"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!""""""""""""""""""""""""#####"$$%%%$$"!!!"!!"""!!!!!!!""!""""""!!!!"""""""!!!""!!""""""##%%%$$""""""!!!$%%%$!!!!!!!!!""""!!""""""$$$!!!!!!!""""###$%%$#"$&&&'(((((())*******+,./00/0000/..-)'""""!!!!!!!!!!!!!!!!!""!!!!!!$%%%%%&%$!!!!!!!!!!!!!!!!!!!!!!""#$##"!!!##$$##"#"""###$#""!!!!!!!!!!!!"""!!!!"""!!!$$$$$!!!!!!!!""""!!!!!!!"#"""##$$$#"""!!!!###"""!!!"""#####$##""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!!"!$$$$$$"""""""""""""""!!!!!!"####"!"!!!!!!$%&''''''&$!!!!!!!!!!!!!""""""""""!!""""#####"""!!!!!!""""""!!!"$$$####"!""""""!!!!!!!!!!""#""""""""""!!!!!!!"$$!!!!!!!!!!!!!!!!!!!!!!""""##""""!"""""#########"""!!!!$$$$$$!"!""""!!!!!!!!!!!!!!!##"""""""""!!!!!!!!!""""#$%%%""$%&'((()*+++***)'$

a score=2878 EG=5.2 E=8.8e-05 fullScore=1.66e+04
s chrM  5133 1318 + 16775 AGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAA-----------------------------------------------ATGATGGTTTAACCCCTTCCCCTACTA----------------------ATGAACCCCCATGCAAAAC--------------------TAATCTGCACAGTAAGCCTCATCATGGGAACCA----------GCATCACAATCTCC-----AGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATC-----------------------------------------ATCCC----CCTCATCTCCAAGTCACACCACCC----------------CCGAGCGATTGAAGCCACTATCAA-------------------ATATTTCCTCACCCAATCAACTGCAT------------CAGCCCTAATCCTCTTCTCGAG----CATAACCAACGCCTGATC-----------------CACCGGACAATGAGA----CATTACACAACTAAACCACCCGACATCATGCCTAATATTAA--------------------------------------------------CAATAGCAATCGCAATCAAATTAGGACTAGTCCC-----------ATTCCACTTCTGATTCCC---------------AGAAGTAC---TCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCT---------------------------------CCTCCTAACATCAC--------------AGTCTCTTAATACCA--------CCTTACTCACCCTCCT-AGCAATCTCCTC---------CACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGA-----AAAATCC-----TAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCC---------------TATAACCCACAACTC---------ACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTA-------------------------------------------------TCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCA-----------------------------------------TGAACTAAAACCCCAATACTAAATGCAACTGTAAT-----------------------------------------------ACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTC---------------------------------------ATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAG-------------------------------------CCACAATCATCACAAT------ACTA----TCACTCCTAAGCCTAT-----TCTTCTACCTCCGACTT---GCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAA-----------------------------------------------------AACTCTGAC---GAACTAA--------CAAAACCCTAAACACCCCC--ACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTAC----------------------------------CATACTATAGAAACTTAGGA-TTAACTGTCAC-CAAACCAAAGGCCTTCAAAGCCTT------------------AAATAAGAGTTAAACTCTCTTAGTTTCT-GCCCAACTAAGA--------------CCAACAGGACATTAACCTGTATCTCCTGAATGCAAATC----------------------------------AGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGA-------------------------TGGGCTTCG
s chrM 11658 1376 + 16775 AGACCAAA------------------------------------------------------------------------TCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATA---------------------GCTAGCCAAGGCCACCTACAACATGAACC------------CCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATC----------CAACCATTCATCATCCTAGCC---TTCTCAGCAA-------------------------------------------------CTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCC-CAACCCTCATCTT--AATCACA------CGCTGAGGAAACCAACCAGAACGACT--------------TAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCT----CTCTTCCCCTACTAGTCTCCATCCTCTACC----TTCACA----------------CAAATACTGGAACCCTCCACC-----------TACCCATTATCAAACTCACCCA-----------------------CCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCA-----------CCCCTATACGGACTACACCTATGACT---GCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACT------------------------------------AAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAA------TGGAGCCCGTATCCAACTTCTT-------ACACTACCCCTTCCTCACCC----TAGC---------CCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACA---------GACCTAAAATC-CCTCATTGCCTACTCATCCGTAAGCCATATGGGCCT-------------------AGTCATCGCTGCAAGTATAATCCA------AACCCAATGATCATTCTCAGG---------------------------------------TGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGC----------------------------------------AAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTG---------------------------------ACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCC---------------------------------------AACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAA----------------------------------------------CTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTA--ACCGGCAC--TGCAACACTCCTAA------CCGCCTCTTACACCC-------TCTACATACTAC----------------------------------------TCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACT---CGAGAA----CATCTTCTCATAACCCTCCACA-----TCATCCCCATACTAA----------------------------------------------CACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAG--TTTAAC------CCAAAC-------------------ATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTT---CGCCG--------AGGGGAGGCCCAAGCCAGCAAG------------------------------AACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAA---------------------------CTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAG
p                         $$$$$$$$!!!!"#"#"!!!!!!!!!"!!!!!!!!!!"""#########""#########$$$$##"""#"""!!""""!!!!!!!!!""""!!!!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!$$$$$$"###""""""###""!!!!!!!!!!!!!""""!!!!!!!!!!#$%%%%$$"""""""!!!!!!!"!!!!!"!!""""""#""$$%&'''(((''(('%%%%%%%$"#$$#"!!!!!!!!!!"""!$$$$$$$$$$$!!!!"##"$$$$$!"##"""!"!!!!""""""""###""""###"""!"""!!!!!!!!!!!!!!"""""""""""""!!!!!!!!""#######""!!!!!!$$$$!"%%"')***)('$#"$$&&&&%!!!!!!"$%&(())'%#""##!%&())**)'&!!!!!!!!!!!!!!""$$##""""""""!!!!!$$%$$$$$$$$%&&)**))('%!!!!##$$$$$$$#""$%%%%%%&''((('&%$$!!!!!!!!$$!!!!!!!!!!!"""!!!!!!!!"""""#"""!!$$$$"#""######"!!!!$$$$$$$$$$$$$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!!!""""########$$%%&&%%$#$$##""""""#$#$$$###$%%$$$$(*++++****++,,---,(&%%!!!!!!!!!!!"""""""""!!$$$%&&&&&&&&&%%!!!"""#$$$$$$$&*)'$&&&&&%$$$%$%%%)/2554300036769<<?ACA@~~~~~~~~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

a score=2878 EG=5.2 E=8.8e-05 fullScore=1.66e+04
s chrM 11658 1376 + 16775 AGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATA------------------------------------------------------------------------ATTATAGCTAGCCAAGGCCACCTACAAC---------------------ATGAACCCCACAAACGAAAACGAATAT------------TCATCTCCACCTTAATCATCATCCAACCATTCA----------TCATCCTAGCCTTCTC---AGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTA-------------------------------------------------ATCCCAAC-CCTCATCTT--AATCACACGCTGAGGAAACCAAC------CAGAACGACTTAGCGCAGGCATTTACCTT--------------CTATTCTATACCCTAATTAGCTCTCTTCCCCTAC----TAGTCTCCATCCTCTACCTTCA----CACAAATACTGGAACCCTC----------------CACCTACC-----------CATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCC-----------------------TAATAGCCTTTATAGTCAAAGCACCCCTATACGG-----------ACTACACCTATGACTGCCTAAAGCCCATGT---AGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCAC------------------------------------CCTCCTAATGGAGCCCGTATCC------AACTTCTTACACTACC-------CCTTCCTCACCCT----AGCCCTATGAGG---------TGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCT---------AAAATCCCTCA-TTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAG-------------------TATAATCCAAACCCAATG------ATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTC---------------------------------------TGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCC----------------------------------------TGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATT---------------------------------ACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTG---------------------------------------ATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCC----------------------------------------------CCACAATTATCTTAACCGGC--ACTGCA--ACACTCCTAACCGCC------TCTTACACCCTCT-------ACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCA----------------------------------------AACACTCGA---GAACATCTTCT----CATAACCCTCCACATC-----ATCCCCATACTAACACTCATCCTCAAACCAGAACTAATCTCAGGAAC----------------------------------------------CCCTCTATGCAAACATAGT--TTAACC------CAAACATTAGATTGTGATTCTAA-------------------AAATAGGAGTTTAACCCTCCTTGTTC---GCCGAGGGGAGGCCCAAG--------CCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTC------------------------------AGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGT---------------------------TGGTCTTAG
s chrM  5133 1318 + 16775 AGATCAAA-----------------------------------------------ACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATG----------------------GTTTAACCCCTTCCCCTACTAATGAACC--------------------CCCATGCAAAACTAATCTGCACAGTAAGCCTCATC----------ATGGGAACCAGCATCACAATC-----TCCAGCAA-----------------------------------------CCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCC----CCCTCATCTCCAAGTCACA----------------CCACCCCCGAGCGATT-------------------GAAGCCACTATCAAATATTTCCTCACCCAATCAACT------------GCATCAGCCCTAATCCTCTTCT----CGAGCA-----------------TAACCAACGCCTGATCCACC----GGACAATGAGACATTACACAACTAAACCA--------------------------------------------------CCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTA-----------GGACTAGTCCCATTCCACTTCTGATT---------------CCCAGAAGTAC---TCCAAGGCTCCTCCCTAATCACTGCCCTACTACT---------------------------------CTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAA--------------CATCACAGTCTCTT--------AATACCACCTTACTCACCC-TCCTAGC---------AATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACA-----CAAACACGAAAAATC-----CTAGCCTTCTCATCCATCTCCCATTTAGGATG---------------AATAATTATAATTATCTCCTATAACCCA---------CAACTCACTATTCTCACC-------------------------------------------------TTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGC-----------------------------------------CCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATG-----------------------------------------------AACTAAAACCCCAATACTAAATGCAACTGTAATACTAACC---------------------------------------CTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAA-------------------------------------TGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACA------ATAC----TATCACTCCTAA-----GCCTATTCTTCTACCT---CCGACTTGCATACCAC-----------------------------------------------------TCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCT---GACGAA--------CTAACAAAACCCTAAACA--CCCCCACCGCCATTCTAA----------------------------------CTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAG-GATTAAC-TGTCACCAAAC------------------CAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTT-TCTGCCC--------------AACTAAGACCAACAGG----------------------------------ACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAA-------------------------TTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCG
p                         $$$$$$$$!!!!!!!!""""!!!!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!"#"#"!!!!!!!!!"!!!!!!!!!!"""#########""#########$$$$##"""#"""!!""""!$$$$$$!!!!!!!""""!!!!!!!!!!#"###""""""###""!!!!!!$%%%%$$!!"!!!!!"!!""""""#"""""""""!!!!!$$%&'''(((''(('%%%%%%%$!!!!!!"""!"#$$#"!!!!$$$$$$$$$$$!"##"!!!$$$$$!!!"""""""""""""!!!!!!!!""#######""!!!!!!!"##"""!"!!!!""""""""###""""###"""!"""!!!!!!!!!!!$$$$"%%"!')***)('$#"$$&&&&%"$%&(())'%#""##!!!!!!!%&())**)'&""$$##""""""""!!!!!!!!!!!!!!!!!!!$$%$$$$$$$$%&&)**))('%##$$$$$$$#""!!!!$%%%%%%&''((('&%$$!!!!!!!!$$!!!!!!"""""#"""!!!!!!!!!!!!!"""!!$$$$!!!!"#""######"$$$$$$$$$$$$$$$$$$!!!""""########$$%%&&%%$#$$##""""""#$#$$$###$%%$$$!!!!!!!!!!!!!!!!!!!!!!!$(*++++****++,,---,(&%%"""""""""!!!!!!!!!!!!!$$$%&&&&&&&&&%%"""#$$$$$$$&*)'!!!$&&&&&%$$$%$%%%)/2554300036769<<?ACA@~~~~~~~~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

a score=2836 EG=7.8 E=0.00013 fullScore=1.06e+04
s chrM  9094  947 + 16775 TAAACCCAAA-----CCCATGATTCTCC---------------ATCATACTCCTAACTTGATTC-ACCTTCTCTCTGCTTATCCAAC-------------------------CCAAACTTCTTTCATTCA-----CTCTAACAAACAACCCTGCAAACAAAATTA-------------------CAACAACTAAACCCACCCCCTGAACCTGACCATG-------------------------------AACCTAAGCTTCTTCGACCAATTCTCAAG---------------------------CCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGA-------------------------------------------------------------------------------------TCA--ACAACCGCCTCTCCAC---CATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAA----------------------------------------------TGAGCCCTCCTACTCACCTCACTTAT-CCTAATACTC--------CTCTCCATTAACCTCCTAGGCCTCCTC--CCCTACACCTTCACCCCAACTACCCAACTATCAATAAACA---------------------------TGGCCTTAGCCCTGCCACTATGACTAGCCACCTTAC---------------------------------------TAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCC-------------------------------------------------------------------------------------------CACTGAT---TCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACC--------------------------------------------------------------------TACTT-----ATCCAACTTATCTCTACA-----GCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCC-------------------------------CTAACGG---------------CACTCATCCTATTCCTACTAACCATCCT--------------------------------AGA-AGTGGCAGTAGCAATA---------ATCCAAGCCTACGTCTTCGTCCTCCTC-----CTAAGCCTCTACTTACAAGA--AAATATTTAATGGCACACCAAGCACACTCCTACCACATAG-----------------TTGACCCAAG------------CCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGG------------------------CCTAATCATATGGTTCCACT----------ACAGCTCGAC
s chrM 15225 1060 + 16775 GAAACC----TGAAACACA---------GGAGTAATCCTCCTCCTCACACTCATAGC-------CACCGCCT---------------TTGTGGGCTATGTTCTCCCATGGGGCCAAA-------------TATCATTCTGAGGGGCCACC---------------GTTATCACAAACCTATTCTCAGCAA----------------------------TTCCCTACATTGGACACACCCTAGTAGAGTGAGCCT------------------------GAGGGGGATTTTCAGTCGACAACCCAACCCTTAC----------------------------------------------------------------------------CCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTC-AAACAACCCCCTAGGCA-TCTCATCCGACTCTGA---------------------------------------------------------CAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCAT----TCCTAACAC--TAGCCCTATTCTCCCCCAACCTCCTAGGAG-----ACCCAGAAAACTTCACCCCAGCAAACCCACTA----------GTAACCCCCCCACATATCAAACCAGAATG----------------------------------ATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTT--------------------------------------------------------GGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACT---CTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCC---------------------------------------------------TAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACT-TCACCATCCTACTTATCC-----TCTTCCCCACAATCGGAACACT-------------------------AGAAAACAAAATACTCAACTACTAAAATACTCTA----ATAGTTTATGAAAAACATTGGTCTT------------------GTAAACCAAAAACTGAAGACTCCACCCTTCTTA--GAGTATCAG--------AAAAGGAGGGCTCAAACCTCCATCTCCA--------GCTCCCAAAGCTGGTATTTTCAAA-TAAACTACTCTCTGAAA-------------------------CCCTTAAACCGCCCGAATTGC------CCCCCGAGACAACCCACGCACAAGCTCTAGTACAAC------------------------AAACAAAGCTAACAACAAACCTCACCCA----------------GCCACCAAAAACAACCCAAC
p                         $$$%$$!!!!!"!!!$$$$!!!!!!!!!""#$##"""!!!!""$&'((((((''&%$$&'&%$!!$$$$$$$!!!!!!!!!!!!!!!!"##$%%#"#"""!!!!!!"#&&$#$%%%%""########"""!!!!!$$%%%%%%%%%%%%$!!!!!!!!!!!!!!!""###"!!!!!!!!!""""$%%%%$!!"""!!!!!!!!!!!!!""""!"""!!""########""""!!!!!!!"#$$$$##!!$$$$$!!!"!!!!!!!!!!!!""""!!!"!!"#$$#""!!!"""!!!!!!!!!!!!$$$$$$$!""##$$$#"!!!!!!!""!!!!!!!"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"""""###"""""##$$"""!!!"""!"""""""""""""!!!!!!!!!!""##$$$###$$%&&$##""""""!!!!!!!""""""""""""!!!!!!!!!!!!$$!""&+,,,+((('%$$$$!"##%,/13333320,'!""""""""######$$$%%$$$##"#####"!!!!!!!""#""""""""""######$%%%$#####"!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!$$&'*+03448;=><;62.-+&"$$"!$%%%%%%$!!"$%$####%'*+,,,-/~~~~~~~~~~~&$#$$$#!!$%%&'()*,..///..,+((&&%%%%%%$$!!!!!!!!!!$$#$%&''%%%$$$####""##$#$#"$$!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!""#########"""!!!"!!!!"""""""####""""""$%%%%%$$$$!"!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!"##$%&%$#"""""""#$$###"#####"""""""""""""""!!!!!!!!!!!!"""##$$%%$%$$$%%%%%%%%%%%$#""""""""!$$$$""!!!!$$$&&((((('''&&&&&&&&()*++,------,,,,+*'%#####"!!!!!""!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!""""""""""""""""!!""!!!!!!!"""###$$%%%%$########""""#$##$$$$$#####""$$$$!"$%$#&'(((*****(&$!!!!"!!!!!$()*++++*(%$$$$$$!!!!!!!!!!!""!!!!!!!""""""#$$$$#####"""""""!""""#$$##"!!$$$!!!!"""#$$$$$%%$$##$$$$$$$$$$!!!!!!!!!!!!!!!!!!""#$$##$%&&%$$%&((&&%##""""!!!!!$!"!$&&&&&%%!!!"!!!!!!"""""""$&'*,--...---,+)'&%""""""""!!!!!$%'()*))+./.-,++(&%!"!$$$&&&&%%%%%$$$"""""""##"""""""""""""""!!!!!"!"!!!!!!!"!!$$$$!!!!!!!!"###$$%$""''(())((**++,,+++++**)'&"""!!!!!!!!!!!!!!!!"!""!"""!!!!!!!!!!!!!"""!!!!!$$$$!"""#$%%&&$""!!!!!!!!!""""$%%%%%%%$$

a score=2836 EG=7.8 E=0.00013 fullScore=1.06e+04
s chrM 15225 1060 + 16775 GAAACCTGAAA----CACAGGAGTAATCCTCCTC---------CTCACACTCATAGCC-------ACCGCCTTTGTGGGCTATGTTCTCCCATGGGG---------------CCAAATATCA-------------TTCTGAGGGGCCACCGTTATCACAAACCTATTCT---------------CAGCAATTCCCTACATTGGACACACCCTAGTAGAGTG----------------------------AGCCTGAGGGGGATTTTCAGTCGACAACCCAA------------------------CCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGC----------------------------------------------------------------------------TCAA-ACAACCCCCTAGGCATCT-CATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGC---------------------------------------------------------TTAACTCTCATACTCACCCCATT----CCTAACACTAGCCCTA--TTCTCCCCCAACCTCCTAGGAGAC-----CCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAA----------TGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCC----------------------------------CAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGAC--------------------------------------------------------CACTCTC---CCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCT---------------------------------------------------TACTTCACC-ATCCTACTTATCCTCTTC-----CCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACT-------------------------CTAATAGTTTATGAAAAA----CATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTT------------------AG--AGTATCAGAAAAGGAGG--------GCTCAAACCTCCATCTCCAGCTCC--------CAAAGCTGGTATTTTCAAATA-AACTACTCTCTGAAACCCTTAAACCGCCCGAA-------------------------TTGCCCCCCGAGACAA------CCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCA------------------------CCCAGCCACCAAAA----------------ACAACCCAAC
s chrM  9094  947 + 16775 TAAACC-----CAAACCCA---------------TGATTCTCCATCATACTCCTAAC-TTGATTCACCTTCT-------------------------CTCTGCTTATCCAACCCAAA-----CTTCTTTCATTCACTCTAACAAACAACC-------------------CTGCAAACAAAATTACAACAA-------------------------------CTAAACCCACCCCCTGAACCTGACCATGAACCT---------------------------AAGCTTCTTCGACCAATTCTCAAGCCCCTGC-------------------------------------------------------------------------------------CTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATC--AACAACCGCCTCTCCA---CCATCCAACTCTGA----------------------------------------------TTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCAC-TTATCCTAATAC--------TCCTCTCCATTAACCTCCTAGGCC--TCCTCCCCTACACCTTCACCCCAACTACCCAACTA---------------------------TCAATAAACATG---------------------------------------GCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCT-------------------------------------------------------------------------------------------GCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACT---GATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTC--------------------------------------------------------------------GGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACT-----TATCCAACTTATCT-----CTACAGCCACAATCGCCCTACT-------------------------------ACCAATAATGCCATCAATCTCCGCCCTA---------------ACGGCACTCATCCT--------------------------------ATTCCTACTAACCATCCTA-GAAGTGGCAG---------TAGCAATAATCCAAGCCTACGTCTTCG-----TCCTCCTCCTAAGCCTCTACTTACAAG--AAAATATTTAATGGCA-----------------CACCAAGCACACTCCTACCACATAGTTGA------------CCCAAGCCCATGACCAATCTTCGGCGCAGC------------------------CGCAGCACTACTAACCACCTCTGGCCTA----------ATCATATGGTTCCACTACAGCTCGAC
p                         $$$%$$!"!!!!!!!$$$$""#$##"""!!!!""!!!!!!!!!$&'((((((''&%$!$&'&%$!$$$$$$$!"##$%%#"#"""!!!!!!"#&&$#!!!!!!!!!!!!!!!$%%%%!!!!!""########"""$$%%%%%%%%%%%%$""###"!!!!!!!!!""""!!!!!!!!!!!!!!!$%%%%$""########""""!!!!!!!"#$$$$##!!!!"""!!!!!!!!!!!!!""""!"""!!$$$$$!!"#$$#""!!!"""!!!!!!!!!!!!!!!"!!!!!!!!!!!!""""!!!"$$$$$$$!!!"""!"""""""""""""!!!!!!!!!!""##$$$###$$%&&$##""""""!!!!!!!""""""""""""!!!!!!!!!!!!!""##$$$#"!!!!!!!""!!!!!!!"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"""""###"""""##$$"""$$""!&+,,,+((('%$$$$"##!%,/13333320,'#$%%%$#####"!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!!""""""""######$$$%%$$$##"#####"!!!!!!!""#""""""""""#####$$&'*+03448;=><;62.-+&!"$$"$%%%%%%$"$%$####!!%'*+,,,-/~~~~~~~~~~~&$!!#$$$#$%%&'()*,..///..,+((&&%%%%%%$$$$#$%&''%%%$$$####""##$#$#"!!!!!!!!!!$$""#########"""!!!"!!!!"""""""####""""""!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!$%%%%%$$$$"##$%&%$#"""""""#$$###"#####"""""""""""""""!!!!!!!!!!!!"""##$$%%$%$$$%%%%%%%%%%%$#""""""""!!"!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!$$$$!!!""!$$$&&((((('''&&&&&&&&()*++,------,,,,+*'%""""""""""""""""!!""!!!!!!!"""###$$%%%%$########""""#$##$$$$$#####""#####"!!!!!""!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!$$$$"$%$#!&'(((*****(&$!!!!!!!!!"$()*++++*(%$$$$$$"#$$$$#####"""""""!""""#$$##"!!!!!!!!!!!!!""!!!!!!!"""""$$$"""#$$$$$%%$$##!!!!$$$$$$$$$$""#$$##$%&&%$$%&((&&%##""""!!!!!!!!!!!!!!!!!!!!!!!$!!"$&&&&&%%!!"""""""!!!"!!!!$&'*,--...---,+)'&%!!!!!""""""""$%'()*))+./.-,++(&%"!!$$$&&&&%%%%%$$$!!!!"!"!!!!!!!"!!"""""""##"""""""""""""""!$$$$!!"###$$%$""!!!!!!''(())((**++,,+++++**)'&"""!!!!!!!!!!!!!"""!!!!!"""!!!!!!!!!!!!!!!!"!""!$$$$!!!!!!""""!"""#$%%&&$""!!!$%%%%%%%$$

a score=2826 EG=8.6 E=0.00014 fullScore=1.43e+04
s chrM  4987 1395 + 16775 CATACCAATCAGCTACGC-------------CGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAA-----CAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAA----------------------------------------------------AAGTAGGAATCGAACCTACACAGAAGAGATCAAAA----------------CTCTTCATACTC--CCTCTATATTATTTTCTAGT--AAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCC---------------------------------------------------------------TTCCCCTACTAATGAACCCCCATGCAAAAC-------------TAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATC--------------TTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCAT-------CCCCCTCATCTCCAAGTCACACCACCCCC-----------------GAGCGAT-TGAAGCCACTATCAAATATTTCCTC------------------------------ACCCAATCAACTGCATCAGCCCTAATCCTCTTCTC--------GAGC------ATAACCAACGCCTGATCCACCGGACAAT------------------GAGACATTACACAACTAAACCACCCGACATCAT----------------------------------------------GCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATT--------------------------------CCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTC-----------------------------------CTCCTCCTAACATC-------ACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGA----------------------------------------------------ATGGGCCTAAACCAAACACAAACACG---------------------AAAAATCCTAGCCTTCTCATCCATCTC---CCATTTAGGATG-----AATAATTATAATTATCTCCTATAA---------CCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTA----------------------TGACCTCAA------------CTGT-----ATTCCTATCCC---TAGCCCAAATCAA---------AGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCT----------------------------------------------------------------------------------CCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTC--------------------CTAAGCCTATTCTTCTACCTCCGAC---------------TTGCATACCACTCAACAATCACACTCCCCCCCAA--------------------------------------CTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCT------------------------AAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACT----------------------------------------------------------------------------------------------------ATAGAAACTTAGGATTAAC-----------TGTCACCAAACCAAAGGCCTTCAA-------------------AGCCTTAAATAAGAGT-----------------TAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGAC-----------------------ATTAAC
s chrM 13201 1432 + 16775 CTTCCTAATCAGC-----CTAATCCCAACAACAATCTTCATCCACTC------------------AGGGGCAGAAAGCATTGCC------------------------------------------------------ACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGA----------------------------CATATACTCCATAATATTCTT-------CCCCATTGCACTATTT------GTA------------------------------------------------------ACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTAC---------------------CTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACA--------------------------TATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCA----------------TGTCATTCCTTCTCAT--------------------TGGATGATGACAAGGACGAG----CTGAAGCCA-----------------ACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGC---------------CTCATCCTAAG-CATAGCATGACTAG--------------------CCTCTTCCCTAAACACCTGAGAAATT-------------------------CAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTA--------------------------------------GCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAG--------------------TAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAG------------------------------------------------------------CCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGC--------------------TCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTC---CACTTCAAGCCAACTAGGC--CTCATAATAGTCACAATTGG---------CCTAGACCTCCCCCAACTAG------------------------------CCTTCCTCCACATCTCAACCCATG-------CCTTCTTTAAAGCT--ATATTATTCCTATG--CTCCGGCCTA------ATTATCCACAGCC-----------------------------------------------------------------------TCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTA---------------------------------------------------AACACCTCATACATCAATACCTGAGCCC-----------------TCTCACTTACACTACTT--------------------------------GCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAAC------------CCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCT------------------------------------------------------CCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACT----------GCTGCCATCATTGTTA-------------------CAACCCTAGGAATTATCCTAGCCCT----------AGAACTCTCAAGCCTATCATACTCCCTCA----------------------------CTCCCCCAAAACACAATCCCCTCATAAAC
p                         $$$$%%&''''&$!!!!!"#$$$$###""""$$$%%%%%%%%%%$$$"""""#$$%%%%%%%$##!!!!!%%&&'''&&&%$$$"""######"""""""######"!!!!!!!!!!!!!!!!!!!!"""""""##""!"""""!!!!!!!!!!!!!""""""""""!"""####""!!!!!""!!!!!!$$$%%%$###$$##""""""#$%%%&&&%$$#"""!!!!!!!!!!!!!!!!$$$$$"$$$$#!!!$$$%&&&'''''&$#$$$"!!!$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!""""""!""!!""""!""""""""""##""""""""""#"!!!!!"""""""""###""!!!!$$$$$$%%$!!"""""!!!!"$$%%'''&"!!!!!!!!!!!!!$%&''''((((((((((()()))))((''&%%%$$$!####""!!""$&%&%###"#$$$#"!!!!!!!!!!!!!!$(***+-/0//011//110..-,*&%'''('''%%#""##!!!!!!!!$$$%&'''&""#""!!!!!!!"""####"!""""""!!!!!!!!!!$$$!$$#!(**+*)'%!!!"!!!!!!!!!!!!!###$%%%%%$#####$$$#"!!!!!!!!!!$%%%&&&&%%%%%&&&%%%$!"""""!!!""""""!!!!!!!!$$$!!"!!!"$$$%%%%$!!!!!""!!!!!!!!!!!!!!!"""""""""""!!""!$$$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!!"!!!!""!!!!!!!!!!!"""#$%%$$########$$%%%$%$$$$%&'''''&&%%!!""!!!!!!!!!!!!!!!!!!!!""#"######$$#"!"""""!!!!""!!!!!!!"!!!!!!!!!!!!%&((((),132335798666432211478830/-,,,,,,.23367~~~~~~~~2200220.,,+***)'$!!!!!!!!!!!!!!!!!!!!##%%&&&''%$$$%%%$$$#""!"""""!!!!""!$$%%&'''&&&&%$$$##$$#$%%%""#"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""####$%%%%$#$$#!!!!!!!!""""#"""###"""#$$##"!!!!!!!!!!!!!!!!!!!!!!!!$%%%%%!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!""!!$&'(+010225531/,&$%#"$%$$$$%&%&((()***($!"##$""$%&&&'())**)(&$"""!!!!!!!!!!!!!""$$%%&&&%%$$"""""""""!!!!!"!!!!!!!!!!""""!!!!!!!!!!"!""""!"!"""!$$""""""!!!!!"$$$$#""$$!!!""""$&'****($!!!!!$$%%%$$!!!!!!!#####"!!$$$$!!!!"""""""!!!!"""""""""""""!!!!!!!!!!!!!!!!!""""""""""!"""###"!!!!!!!!!!!!"##"""!!!!!!!"!!""""""""#########""""!!!!"""#""!!!!!!!!!""""""""!!!!!""#$%%$$$$%%%&&&&&&&&&&&%%%%&&'&&&'()****++**)%%%%&&&&&%%&&'()))*))(('&&&%%$""##$$$$%&&%%%%$#"""###$%$######""""###"""#$$$$$##"!!!!!!!!!!!!!!!!!!!!$%%%%%$$""!!!!!!!!"""""!!!!!!!!!!!!!!!!!$$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"""!"""""!!!"""!!!!!"!!!"!!!!!!!""""!$%%&&&&&&&&&&&&&&&&&&&&&&&&&&$!!!!!!!!"!!!"#""!""""$#""""#$&%%%%%$$')+,,,,,,+++,,,,+)'%!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!%&%%%%%&%%%%$$$%%%%&'''&%%$$$$$$$$$$$$$""!!!""###$$$#""""#$##""!!!!!""$%&&$#######""!!!!!""######"""%%&&'''&%"##""""""!"""""""""""$$$$$!"!!!!!!!!!!!!!!!!!"!!!!!!!!!""""#""""$$$$$$"""#####""!!!"####"!!""#"""$$$%&&&&&%%%"""""##"!!""##"""""""""""""!!!!!!!!!!!!!!!!!"""""""$$$$$$

a score=2826 EG=8.6 E=0.00014 fullScore=1.43e+04
s chrM 13201 1432 + 16775 CTTCCTAATCAGCCTAATCCCAACAA-----CAATCTTCATCCACTCAGGGG------------------CAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAA------------------------------------------------------AAATAGACATATACTCCATAATA----------------------------TTCTTCC-------CCATTGCACTATTTGT------AACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTC------------------------------------------------------TTTACCTACCTACTCACCTTCC---------------------TCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTT--------------------------GTAGGATGAGAAGGAGTAGGAATCATGTCATT----------------CCTTCTCATTGGATGATGACAAGGAC--------------------GAGC----TGAAGCCAACACAGCTGCACTACAGGCAATAATCTACA-----------------ACCGAATCGGAGACATTGGCCTCATCCT---------------AAGCATAGC-ATGACTAGCCTCTTCCCTAAACACCT--------------------GAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTG-------------------------GCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCT--------------------------------------TCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCAC--------------------CCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAAC------------------------------------------------------------ATGCGCTCTCACTCAAAACGACATCAA--------------------AAAAATCATTGCCTTCTC---CACTTCAAGCCAACTAGGCCTCAT--AATAGTCACAATTGGCCTAGACCT---------CCCCCAACTAGCCTTCCTCCACATCTCAACCCA------------------------------TGCCTTCTTTAAAG-------CTATATT--ATTCCTATGCTC--CGGCCTAATTATCCAC------AGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAA-----------------------------------------------------------------------CCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATAC---------------------------------------------------CTGAGCCCTCTCACTTACACTAC-----------------TTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAAC--------------------------------CTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGA------------AAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATC------------------------------------------------------ACAAAAACTGCTGCCATCAT----------TGTTACAACCCTAGGAATTATCCT-------------------AGCCCTAGAACTCTCAAGCCTAT----------CATACTCCCTCACTCCCCCAAAACACAATCCCCTC----------------------------ATAAAC
s chrM  4987 1395 + 16775 CATACCAATCAGC-------------TACGCCGGCCTCCCCCCAATC-----TAAGGAAGCGTGCCTGAACAAAAAGGATCACT----------------------------------------------------ATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGG----------------AATCGAACCTACACAGAAGAGATCAAAACTCTT--CATACTCCCTCTATATTATTT--TCTAGTA---------------------------------------------------------------AGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTAC-------------TAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCA--------------TCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCA-------ACACCTTAGCCATCATCCCCCTCAT-----------------CTCCAAGTCACACCACCCCCGAG-CGATTGAAGCCA------------------------------CTATCAAATATTTCCTCACCCAATCAACTGCATCAGC--------CCTAATCCTCTTCTCGAG------CATAACCAA------------------CGCCTGATCCACCGGACAATGAGACATT----------------------------------------------ACACAACTAAACCACCCGACATCATGCCTAATATTA--------------------------------ACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAA-----------------------------------AACTCCCCCCAATCACACTCCTCCTCCTAACATC-------ACAG----------------------------------------------------TCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGC---------------------CTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTC---CCATTTAGGA-----TGAATAATTATAATTAT---------CTCCTATAACCCACAACTCA----------------------CTATTCTCACCTTCATCCTCTACACAATTATG------------ACCTCAACT-----GTATTCCTATC---CCTAGCCCA---------AATCAAAGTC----------------------------------------------------------------------------------CTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTA--------------------ACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCT---------------ATTCTTCTACCTCCGACTT--------------------------------------GCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAAC------------------------TAACAAAACCCTAAACACCCCCACCGCCATTCT----------------------------------------------------------------------------------------------------AACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACT-----------TAGGATTAACTGTCA-------------------CCAAACCAAAGGCCTTCAAAGCCTT-----------------AAATAAGAGTTAAACTCTCTTA-----------------------GTTTCTGCCCAACTAAGACCAACAGGACATTAAC
p                         $$$$%%&''''&$"#$$$$###""""!!!!!$$$%%%%%%%%%%$$$!!!!!"""""#$$%%%%%%%$##%%&&'''&&&%$$$!"""""!!!!!!!!!!!!!""""""""""!"""####""!!!!!""!!!!!!"""######"""""""######"!!!!!!!!!!!!!!!!!!!!"""""""##""$$$%%%$!!!!!!!!!!!!!!!!###$$##""""""#$%%%&&&%$$#"""$$$$$!!"$$$$#!$$$%&&&'''''&$!!#$$$"!$""""""!""!!""""!""""""""""##""""""""""#"!!!!!"""""""""###""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!$$$$$$%%$!!!!!!!!!!!!!!!"""""!!!!"$$%%'''&"$%&''''((((((((((()()))))((''&%%%$$$!!!!!!!!!!!!!!!####""!!""$&%&%###"#$$$#"$(***+-/0//011//110..-,*&!!!!!!!%'''('''%%#""##!$$$%&'''&!""""""!!!!!!!!!!""#""!!!!!!!"""####"$$$!!$$#(**+*)'%###$%%%%%$#####$$$#"!!!!!!!!!!!!!"!!!!!!!!!!!!!$%%%&&&&%%%%%&&&%%%$!!!!!!!!!"""""!!!""""""$$$!"!!!"!$$$%%%%$!!"""""""""""!!""!!!!!!""!!!!!!!!!!!!!$$$$$$$$"!!!!""!!!!!!!!!!!"""#$%%$$########$$%%%$%$$$$!!!!!!!!!!!!!!!!!!!!!!!!!%&'''''&&%%!"""""!!!!""!!!!!!!"!!!!!!!!!!!!!!""!!!!!!!!!!!!!!!!!!!!""#"######$$#"%&((((),132335798666432211478830/-,,,,,,.23367~~~~~~~~2200220.,,+***)'$##%%&&&''%$$$%%%$$$#""!"""""!!!!""!!!!!!!!!!!!!!!!!!!!!$$%%&'''&&&&%$$$##$$#$%%%!!!!!!!!""""#"""###"""#$$##"!!!!!!!!!!!!!!!!!!!!!!!!""#"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""####$%%%%$#$$#$%%%%%"!!!!!!!!!!!!!!!!""!!!!!!!!!!!!!!!!!"""""$&'(+010225531/,&$%#"$%$$$$%&%&((()***($##$""!"$%&&&'())**)(&$!!!!!!!"""""!!!!!!$$%%&&&%%$$!!!!!!!!!"!""""!"!"""!"""""""""!!!!!"!!!!!!!!!!""""!$$!!!!"$$$$#""""""""!$$!""""!!$&'****($!!!!!$$%%%$$!#####"!!!!!!!!$$$$!!!!"##"""!!!!!!!"!!""""""""#########""""!!!!"""#""!!!!!!!!!""""""""!!!!!""#$%%$$$!!!!"""""""!!!!"""""""""""""!!!!!!!!!!!!!!!!!""""""""""!"""###"!!!!!!!!$%%%&&&&&&&&&&&%%%%&&'&&&'()****++**)%%%%&&&&&%%&&'()))*))(('&&&%%$!!!!!!!!!!!!!!!!!!!!""##$$$$%&&%%%%$#"""###$%$######""""###"""#$$$$$##"$%%%%%$$!!!!!!!!!!!!!!!""!!!!!!!!"""""!!$$!"""!"""""!!!"""!!!!!"!!!"!!!!!!!""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!$%%&&&&&&&&&&&&&&&&&&&&&&&&&&$"#""!""""$#""""#$&%%%%%$!!!!!!!!"!!!$')+,,,,,,+++,,,,+)'%%&%%%%%&%%%%$$$%%%%&'''&%%$$$$$$$$$$$$$""!!!""###$$$#""""#$##""!!!!!""$%&&$#######""!!!!!""######"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!%%&&'''&%""""""""""""##""""""!$$$$$"!!!!!!!!!""""#""""!"!!!!!!!!!!!!!!!!!$$$$$$!!!"####"!!""#""""""#####""$$$%&&&&&%%%!!!!!!!!!!!!!!!!""""""""""""##"!!""##"""""""""""""!$$$$$$

a score=2715 EG=24 E=0.00041 fullScore=1.47e+04
s chrM 11865 1540 + 16775 CCCAACCCTCATCTTAATCACACGCTGAGGAAACC-------------AACCAGA----ACGACTTAGCGCAGGCATTT-------------ACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTC-------------------------------CATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCT----------------------------------------------------------------GCCTCCTGAACAAGCTTATTATCTAGCC---------------------------TAGCTCTCCTAATAG----CCTTTATAGTCAAAGCACC----CCTATACGGACTACA------CCTATGACTGC--CTAAAGCCCATGTAGAAGCACCA----------ATCGCAGGCTCCATACTACTCGCTGCTCTACTAC-------------------------------------TAAAACTAGGCGGATATGGCATCATACGAG------------------------TCACCCTCCTAATGGA----------GCCCGTATCCAACTTCT-------TACACTACCCCTT----CCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCT--------------CTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACC-------------------------------------CAATGATCATTCTCAGGTGCAA----TAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGC-------------------------------------CTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCA-------------------------------ACCCCTCCTACCATTG----------ATATCAGTATGATGATTACTAGCCAACTTAACCAACATG---GCCCTGCCCCCAACCACC--AACCTGATAG---------CAGAACTAACAATTATAGTTG-----CCCTCTTCAACTGATCC---TCCCCCACAATTATCTTAACCGGC-----ACTGCAACACTCCT--AACCGC--CTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCA--------------------TCCCACATCACAACAACCCCCAACTCAAACACTCGAG-----------------------------AACATCTTCTCATAACCCTCCACAT----------------------------------------CATCCC----CATACTAACACTCATCCTCA-AACCAGAACTAATCTCAGGAACCCCTCTATGCAAAC--------------------------------------ATAGTTTAACCCAAACATTAGA-TTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCC-----------GAGGGGAGGCCCAAGCCAGCAAGAACTGCTAA--------TTCCTGCATCTGAGCTTTAAACCTCAGT--------------------CCCCTTAACTTTTAAAGGATAAGAGCAATCCG---------TTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCC-----------------------------------------------------------------------------------------------------------------------------------ATCACCAAAACCATTAAAACC----------------GCCTTCCTAATCAGCCTAATCCCAACA------------------------ACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAA--------------------------------------------------------CTTCAAGA---------TCCCCATCTCCCTAA----------AAATAGACATATACTCCAT----AATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAG--------------------CATCCGA
s chrM 15023 1547 + 16775 CCAAATCCTCA------------------------CCGGCCTACTACTAGCC---ATGCACTACACAGC----------AGACACATCCCTAGCCTTCTCCTCCGTAGCCC---------------------------ACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAAC---------------------------------------------------GGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACC-------------------------TCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTC----CTCACACTCATAGCC--------ACCGCCTTTGTGGGCTA--TGTTCTCCCATGG----GGCCAAATATCATTCTGAGG-----GGCCACCGTTATCACAAAC-------------------------CTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAG---------------------------AGTGAGCCTGAGGGGGATTTTCAGT---------------CGACAACCCAACCCTTACCCGATTC--TTCGCTTTACACT-------TCCTCCTCCCCTTTGCAATCGCAGGTAT--------------TACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCG--------------------------------------------ACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGA-CATTCTG--------GGCTTAACTCTCATACTCAC-------------------------------CCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCC---------------------------------------------------AGAAAACTTCACCCCAGCAAACCCACTAGTAACCCC-----------CCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCC--TACGCTCCATCCCCAA-----CAAACTTG----GAGGTGTACTAGCCCTAGCAGCCTCAGT--CCTCATCCTCTTC--CTAATCCCCTTCCTCCACAA--ATCTAAAC----AACGAACAATAACCTT---CCGACCA-CTCTCCCAAACCCTATTCTGACT----------------------------TCTAGTAGCCAACCTTCTTAT------------------------------------CCTAACCTGAATCGGAAGCCAACCAGTAGAACACC-------------------CCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCA----CCATCCTACTTATCCTCTTCCCCACAATCGGAA----------------------------CACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTT-------AGAGTATCAGAAAAGGAGGGCTCAAACCTCC------------ATCTCCAGCTCCCAAAGCTG----------------GTATTTTCAAATAAACTACTCTCTGAAACCCTTAAA----------------CCGCCCGAATTGCCCCCCGAGACAACCCA--------------------------------------------------------------------------------------------------------------------------------------CGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATC------------------AACAGTAACCACCCCCACCTTT---------------------CAAAAATCAACGAGCCCTCCCAGAACCACCCCCAT------------------------------------------------------TCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCA---GGATAAGGATCCGCAGC-------TAATGACACAGAATAAACAAAAAC-----CACCAACATCCCCCCTAAATACACCAAAAATAA------------------------------------CGCCAAGGAAACAAAAGAAACACCCAA
p                         $$$$$%%%%$$!!""##""""""""#$%&&%$""!!!"""""!!!!!!$$$$!""!#!!$%%%%%%%$$"!!!!!!!!!!!!!!!!"###""$&'()))((((((''%%%$"#$$####""""!!!!!!!!!!!!!!"!"!!!!!!"$%&%$$##"###########"!&)***)))+,--......-+(%##"""""!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!"""""###""""""!!"""#""""""""""""""""####$$$#"!"""""""#$$##"!!$$$!!!!!!!!!!!!"""""""""!!!!!!"""""####""!!""""""""""""$$$%%%%%%%$""""!!!!$$$$$%%%%$$!"#"""""!!!"$%&&'(())))('!!##%%#"%&&&&&$$$!!!!$$%%%%%&&'&%%%%%%$!!!!!!""!!##$&%%&&&&&%%$"""""!!!!!!!!!!!!!!!!!!!!"""""""""""#"""!!!!!"###$%%$$$$$#"!!!$$$!!!!!!!!!!!!"""""""""""""""""""""""""""!!!!!"""!!!!$!!!!""#####%&%#!!!!!!!!!!$(*++--,,,+*&%$!!""#$#"!$$$$$$!!!!!!!!!!!$$%%%%%&&&&%%$$$$%'(('&$!!!!!!!!!!!!!!!"!!!!!!!!!!!!$$)+,-.013776434447752/,+*)&$$$$$$$$%%&&'''~~~~~~~~####""""##$$##"""""""""""""""""""!!!!!!""""!"###""""""""""!!!!!!!!!!!!!!!!"""""""$$$$$$$%'((''$""""$%%$!!!!&'())***+**)((%$!!!!""!!!!!!!!!!!!!!""""!!!!!"!!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!!$$$$$$$$$$$!"""""####$###""""""###########""""###""##""####""!!!"!!!!!!!!!!!!!!!!!!!!!!!""#""$$$$$!!!!!!!!"""!!!!!!!!!!$%)*,.1145553/...---,((('&&&%%&&&&%$$""!!"%&&&&&''''''%"###"!!$%&&&%!!!!"#$$$#"""$$%%%&'''''''&&&&&$!!###""$%&&&&&%%%&(()(&%###$%&'()**)'%%%%&&%%$$!!!!"""""$$$$%%&%$$$!!!!!$$$$$!!"%&&&''''(''&%%$$$$$$$!!!!!!!!!""""#$$$$#""!!!!!!!!!!!!!!!!!!!!!!!!!"!$!!!""""""""""""""""""!"""!!!!!""##!!!!!!!!""""!!!""""""!!!!!!!!!!$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!"""""##$%&&%%%%$$$$###"""""#$$#""""$$!!!!!!!!$$%&&&&'''''''''''&%$$$%%%%%$!"""""""!!!!!!!!!!!!!""""""""##"############"!!!"""!""""""""#$%%$$%(+,--,*(((),.1442/*)$"&'**))'&&%%%%%%%$$$$$%&&'())))(((&!!!!!!!#$&%$#!!!!"$%%&&&')+--..,*(&$$$"#$#"!!!!!!!""""""!!$$$$$$$$$$$$!!!!!!!!!!"""""!""!!!""#####""""""!!$$$$$$%&&&&&&&%$#$$$$$$$$##"""""!!!""""##$%%%%%%%%%%&&&&&&%%$"####!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!!!!!!!""!!!!!"!!"!!!"""""""""""!!!!!!""""""""""""""""!!!!!!!!!!!!!!!!!!!"###!!"#"###"""!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!"""""!"!"""""""""""!""!!!!!!"""""""""""!!!"!""!!!!!!!!"""!!""#$$%%%$#"""""""!!!!!!!!!!$$$!!!!!!!!!!"""##"!!!!!!""!!!!!!!!!!$$$$$$!!!!!!!!!!"#"!!!!!!!!!"###"!!!""""!!!!!!!!!!!$$$$$$$$$$$!!!!!!!"""""""!!!!!!!!!!!!!!!!!"#$$$$###""""###"!!!!!!"""##"""!!!!!!!!!!!""""""###$##"""!!!!!!!!!!!!!!!!!!!!!"$%%%$!!!""##$##""$%%%%%$$!""!!!!!"#######"$%&''''''&&%%$"!!""!!!!%&&''&&&&&&&&&&'''''&&$$$$$$$"#$$$$$##$$$$####%%$#"!!"!""!""""#""!!!!!!!!!!!!!!!!!!!!$$$$$$$

a score=2715 EG=24 E=0.00041 fullScore=1.47e+04
s chrM 15023 1547 + 16775 CCAAATCCTCACCGGCCTACTACT------------------------AGCCATGC---ACTACACAGCAGACACATCCCTA----------GCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACT---------------------------CATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCT---------------------------------------------------ACCTCTACAAGGAAACCTGAAACACAGGAG-------------------------TAATCCTCCTCCTCA----CACTCATAGCCACCG--------CCTTTGTGGGCTATGTTCT--CCCATGGGG----CCAAATATCATTCTGAGGGGCCACCGTT-----ATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAG-------------------------TAGAGTGAGCCTGAGGGGGATTTTCAG---------------------------TCGACAACCCA---------------ACCCTTACCCGATTCTTCGCTT--TACACTTCCT-------CCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACC--------------TCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTT--------------------------------------------CAAAGA-CATTCTGGGCT--------TAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTC-------------------------------CTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTA---------------------------------------------------ACCCCCCCACATATC-----------AAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTAC--GCTCCATCCCCAACA-----AACTTGGAGGTGTAC----TAGCCCTAGCAGCCTCAGTCCTCA--TCCTCTTC--CTAATCCCCTTCCTCCACAA--ATCTAAACAACGA----ACAATAACCTTCC---GACCACT-CTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTA----------------------------TCCTAACCTGAATCGGAAGCCAACCAGTAG------------------------------------AACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTT-------------------CACCAT----CCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTA----------------------------ATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGA-------AAAGGAGGGCTCAAACCTCCATCTCCAG------------CTCCCAAAGCTGGTATTTTCAAATAAACTACT----------------CTCTGAAACCCTTAAACCGCCCGAA----------------TTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCC--------------------------------------------------------------------------------------------------------------------------------------ATCAACAGTAACCACCCCC------------------ACCTTTCAAAAATCAACGAGCCCTCCCAGA---------------------ACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAG------------------------------------------------------CCTCAGGATAAGGA---TCCGCAGCTAATGACACA-------GAATAAACAAAAACCACC-----AACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAA------------------------------------CACCCAA
s chrM 11865 1540 + 16775 CCCAACCCTCA-------------TCTTAATCACACGCTGAGGAAACCAACC----AGAACGACTTAGC-------------GCAGGCATTTACCTTCTATTCTATACCCT-------------------------------AATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAAT----------------------------------------------------------------ACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCC---------------------------TCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTA----ATAGCCTTTATAGTC----AAAGCACCCCTATACGGACTA------CACCTATGA--CTGCCTAAAGCCCATGTAGAAG----------CACCAATCGCAGGC-------------------------------------TCCATACTACTCGCTGCTCTACTACTAA------------------------AACTAGGCGGATATGGCATCATACGAGT----------CACCCTCCTAATGGAGCCCGTATCCAACTT-------CTTACACT----ACCCCTTCCTCACCCTAGCCCTATGAGGTGC--------------CCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCG-------------------------------------TAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTC----AGGTGCAATAATCCTCATAATCTC-------------------------------------CCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACAC-------------------------------AAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCC----------TCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACA---TGGCCCTGCCCCCAA--CCACCAACCTG---------ATAGCAGAACTAACAATTATAGT-----TGCCCTCTTCAACTGATCC---TCCCCCACAATTATCTTAAC-----CGGCACTGCAACACT--CCTAACCG--CCTCTTACACCCTCTACATACT--------------------ACTCTCAACCCAACGAGGCACTCTTCCAT-----------------------------CCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATC----------------------------------------TTCTCATAACCCTCCACATCA----TCCCCATACTAACACTCATCCTCA-AACCAGAA--------------------------------------CTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGA-TTGTGATTCTAAAAATAGGAGTTTAACCCTCCTT-----------GTTCGCCGAGGGGAGGCCCAAGCCAGC--------AAGAACTGCTAATTCCTGCATCTG--------------------AGCTTTAAACCTCAGTCCCCTTAACTTTTAAA---------GGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTA-----------------------------------------------------------------------------------------------------------------------------------TCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATC----------------ACCAAAACCATTAAAACCGCCTTC------------------------CTAATCAGCCTAATCCCAACAACAATCTTCAT--------------------------------------------------------CCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCA---------AGATCCCCATC----------TCCCTAAAAATAGACATATAC----TCCATAATATTCTTCCCCATTGCACTATTTGTAA--------------------CCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGA
p                         $$$$$%%%%$$!!"""""!!!!!!!!""##""""""""#$%&&%$""!$$$$!#!!!""$%%%%%%%$$!!!!!!!"###"""!!!!!!!!!$&'()))((((((''%%%$!"!!!!!!"$%&%$$##"###########"!"#$$####""""!!!!!!!!!!!!!!"&)***)))+,--......-+(%!!!"""""###""""""!!"""#""""""""""""""""####$$$#"!"""""""#$$##"!!##"""""!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!$$$!!"""""####""!!""""""""""""!!!!!!!!!!!!"""""""""!!!!$$$%%%%%%%$!!!!""""$$$$$%%%%$$!!!"!"#"""""$%&&'(())))('##%%#"!!%&&&&&$!!$$!!$$%%%%%&&'&%%%%%%$!""!!##$&%!!!!!%&&&&&%%$"""""""""""#"""!!!!!"###$%%$$$$$#"!!!"""""!!!!!!!!!!!!!!!!!!!!$$$""""""""""""!!!!!"""!!!!!!!!!!!!!!!!"""""""""""""""$!!!!!!!!!!!!!!""#####%&%#$(*++--,,,+*&%$""#$#"!!!$$$$$$!!!!!!!!!!!$$%%%%%&&&&%%$$$$%'(('&$!"!!!!!!!!!!!!!!!!!!!!!!!!!!$$)+,-.013776434447752/,+*)&$$$$$$$$%%&&'''~~~~~~~~"###""""""""""!!!!!!!!!!!!!!!!"""""""####""""##$$##"""""""""""""""""""!!!!!!""""!$$$$$$$%'((''$!!!!""""$%%$&'())***+**)((%$!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""!!!!!!!!!!!!!!""""!!!!!"!$$$$$$$$$$$!!"!!!!!!!!!!!!!!!!!!!!!!!""#""!"""""####$###""""""###########""""###""##""####""!$$$$$!!!!!!!!!!!!!!!!!!"""$%)*,.1145553/...---,((('&&&%%&&&&%$$!!"""%&&&&&''''''%!!"###"$%&&&%"#$$$#"""!!!!$$%%%&'''''''&&&&&$###""!!$%&&&&&%%%&(()(&%###$%&'()**)'%%%%&&%%$$"""""!!!!$$$$%%&%$$$!!!!!$$$$$!"!%&&&''''(''&%%$$$$$$$!!!!!!!!!!!!!!!!!!"!!!!!!!!!!""""#$$$$#""!!!!!!!$!!!!!!""""!!!""""""!!!!!!!!!!!!!""""""""""""""""""!"""!!!!!""##!!$$$$$$!!!!!"""""##$%&&%%%%$$$$###"""""#$$#""""!!!!!!!!!!!!!!!!!!!$$!!!!!!!!$$%&&&&'''''''''''&%$$$%%%%%$"##"############"!!!"""!""""""""#$%%$$!"""""""!!!!!!!!!!!!!"""""""%(+,--,*(((),.1442/*)$"&'**))'&&%%%%%%%$$$$$%&&'())))(((&#$&%$#!!!!"!!!!!!!$%%&&&')+--..,*(&$$$""""""!!"#$#"!!!!!!!$$$$$$$$$$$$""!!!""#####""""""!!!!!!!!!!!!"""""!$$$$$$%&&&&&&&%$!!!""""###$$$$$$$$##"""""$%%%%%%%%%%&&&&&&%%$"#"###"""!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!"""""!"!"""""""""""!""!!!!!!"""""""""""!!!"!""!!!!!!!!"""!!""#$$%%%$#"""""""!!!!!!!!!!"####!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!!!!!!!""!!!!!"!!"!!!"""""""""""!!!!!!""""""""""""""""!!!!!!!!!!!!!!!!!!!"###!!$$$!!!!""!!!!!!!!!!!!!!!!!!!!"""##"!!$$$$$$!"###"!!!""""!!!!!!!!!!!!!!!!!!!!!"#"!!!!!!!!$$$$$$$$$$$"""##"""!!!!!!!!!!!""""""###$##"""!!!!!!!!!!!!!!!!!!!!!"!!!!!!!"""""""!!!!!!!!!!!!!!!!!"#$$$$###""""###"!!!!!!$%%%$""##$##""!!!$%%%%%$$!"#######"!""!!!!$%&''''''&&%%$!!!!"!!""%&&''&&&&&&&&&&'''''&&$$$$$$$!!!!!!!!!!!!!!!!!!!!"#$$$$$##$$$$####%%$#"!!"!""!""""#""$$$$$$$

a score=2674 EG=36 E=0.0006 fullScore=8.57e+03
s chrM 3803 585 + 16775 GAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACT------------------------------------------------------GAGCACACCCCAACC--------------TTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAA------------------------------------------------------------------GGCTTAAGCCCTTTAT-----------------CCAGAGGT---TCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTG-------------CCCACCCTAACAAACCT----TCTAATCATAACCT----TATCCTAT--------ATTCTCC------CCATCCTAATCGCCGTGG----------CCTTCTTAACACTT----GTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCC---TTTTGGTCTACTCCAAC----CCGTTGCAGACGGGGTAA----------AACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTC---------------------------CCCCTTCCTCTTC------ATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTT---GAGTCCCCCTCCCACTACCATTCCCCCTTGCAGA-----------------------------------CCTCAACCTAGGACT--------------------ACTATTTCTCCTA
s chrM 5391 596 + 16775 GAGCGATTGAAGC----------------------------------------------------------------CACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATA--------ACCAACGCCTGATCCACCGGACAATGA-----------------------------------------------------------------------------------------GACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCC------CATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCAC----------------TGCCCTACTACTCTCCACCCTAATAAAAC-TCCCCCCAATCACAC---TCCTCCTCCT--AACATCACAGTCTC-TTAATACCACCTTACTCACC----CTCCTAGCAATCTCCTCCACCCT-AATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTA--------------GCCTTCTCATCCA-------TCTCCCATTTAGGAT-------GAATAATTATAATTAT----------------------------------CTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAA------TCAAAGTCCT---------------------------AAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCA----------ATACTAAATGCAACTGTAATACTAACCCTCCTC
p                       $%%%%%%$$$$$$!!""""!!!!!""###""!!!!!!!!""""""#""""""!!""""""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!!"""""#$$##%&&&&%%!!!!!!!!"""####"""""""$$%%%&'(((('%!!!!!!!!!!!!"#$$$$$#########""""!!!!""""""""""""""##$#$$###"""""####"###$$###""!!!!"""""!$#$#$#"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!!!!!!!!!!!!!!""!!!""!$$$$$$$$$$!!!!!!"""#$%%%%$%%&%$$#&)+,+*)$%&#%&)))***+,./00.,'%%$$!"#$$$##"""!!!!"!"!!!!!!!"!!!$*-35788631.,)$$!#""#$%',..-,*($!!!"""!$$%%%$!!#$%%$%$#$$%%%$!"%&&&%$%&&&&&&&&&&%$!!!!##$$$$""""$%%%&&&%&%$$$!"""!$$%%%%&'''''((034544422011122211110.,*('&&&%$$%&&&''''&%$"!!!!$$$$$$$$$$"!""$$"!!!!$%&&&$$$$$$!!!!!!!!!""""""""$$$$$$!!!!!""#$$$#""##""""!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!%'~~~~~))(''%&''(('&)*+++,------++******++,++,,,,,,+*'&%"""###!!!&())(&$!!!!!!!!!!!!!!!!!!!!!!!!!!!$&%#!!!!!!!!!!!!!!!"!!!!"""#####""!$$$$$!!!!!!!!!!""#""##$$$$$####"""!$$$$$$$$$$$$$

a score=2674 EG=36 E=0.0006 fullScore=8.57e+03
s chrM 5391 596 + 16775 GAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTC----------------------------------------------------------------GAGCATAACCAACGCCTGATC--------CACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTA-----------------------------------------------------------------------------------------GGACTAGTCCCATTCCACTTCTGATTC------CCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTC----------------TCCACCCTAATAAAACTCCC-CCCAATCACACTCCT---CCTCCTAACATCAC--AGTCTCTTAATA-CCACCTTACTCACCCTCCTAGCAA----TCTCCTCCACCCTAATC-GGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCC--------------TTCTCATCCATCTC-------CCATTTAGGATGAATAATTAT-------AATTATCTCCTATAACCCACAACTCACTATTCT----------------------------------CACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCA------AAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAA---------------------------CCCCAATACTAAATGCAACTGTAAT----------ACTAACCCTCCTC
s chrM 3803 585 + 16775 GAGCAATCCAGGT------------------------------------------------------CGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACA--------------CCCCAACCTTCTAAGCAATGA------------------------------------------------------------------ATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCC-----------------CTTTATCCAGAGGT---TCAAATCCTCTCCCTAGCTAC-------------CCCGGACATGACCCTGCCCACCCTAACAAACC----TTCTAATCATAA----CCTTATCCT--------ATATTCTC------CCCATCCTAATCGCC----------GTGGCCTTCTTAACACT----TGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCA---AACATTGTGGGCCCTTTTGGTCTA----CTCCAACCCGTTGCAGAC----------GGGGTAAAACTAT---------------------------TCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTC------ATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGA---CTATTTGAGTCCC-----------------------------------CCTCCCACTACCATTCCCCCTTGCAGACCTCA--------------------ACCTAGGACTACTATTTCTCCTA
p                       $%%%%%%$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!!"""""#$$##!!""""!!!!!""###""!!!!!!!!""""""#""""""!!""""""""""""!!!!!!!!!!!%&&&&%%"""####"""""""!!!!!!!!$$%%%&'(((('%$#$#$#"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!!!!!!!!!!!!!!""!!!""!!!!!!!!!!!!!"#$$$$$#########""""!!!!""""""""""""""##$#$$###"""""####"###$$###""!!!!"""""!$$$$$$$$$$"""#$%%%%$%%&%$$#!!!!!!&)+,+*)$%&#%&)))***+,./00.,'%%$$!"!!!!!!!"!!!!"#$$$##"""!!!!"$*-35788631.,)$$#""#!$%',..-,*($"""!!!!$$%%%$#$%%$%$#!!$$%%%$"%&&&%!$%&&&&&&&&&&%$##$$$$""""!!!!$%%%&&&%&%$$$"""!!$$%%%%&'''''((034544422011122211110.,*('&&&%$!!!$%&&&''''&%$"!$$$$$$$$$$!!!!"!""$$"$%&&&$$$$$$!!""""""""!!!!!!!$$$$$$"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""#$$$#""##""""!!!!!!!!!!!!!!%'~~~~~))(''%&''(('&)*+++,------++******++,++,,,,,,+*'&%!!!"""###&())(&$$&%#!!!!!!!!!!!!!!!"!!!!"""#####""!!!!!!!!!!!!!!!!!!!!!!!!!!!!$$$$$""#""##$$$$$####"""!!!!!!!!!!!$$$$$$$$$$$$$

a score=2768 EG=15 E=0.00025 fullScore=3.41e+03
s chrM  3957 89 + 16775 AAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAAT------GCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCG
s chrM 10123 86 - 16775 AAGGTCACAGGTAAGATGGCTGAGT---------GTTGAAGCGTTAGGCTGTAGTCCTTTTTACAGAGGTTCAATTCCTCTTCTTATCGACTCTG
p                       $$%%%%%)***++**+,--,++*)%###"#""""!!!!!!&&&''*-/0/..02245544245~~~~~~~~~~~;<==<:75421/,,**)('&%

a score=2768 EG=15 E=0.00025 fullScore=3.41e+03
s chrM  6566 86 + 16775 CAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAAC---------ACTCAGCCATCTTACCTGTGACCTT
s chrM 12729 89 - 16775 CGGGGTAGCTAGGGAGAGGATTTGAACCTCTGGATAAAGGGCTTAAGCCTTTTGC------ATTTGCCGAGCTCTGCCACGCTAGCTGGATCCTT
p                       %&'()**,,/12457:<==<;~~~~~~~~~~~54244554220../0/-*''&&&!!!!!!""""#"###%)*++,--,+**++***)%%%%%$$

a score=98759 EG=0 E=0 fullScore=9.88e+04
s chr32 0 1028 + 1028 CATCTAAACCAACACCTAATCCTAAACCTAAGGCCTTCCGGAATCCTAAACCTAAGCCAACAGctaaccctaacccatcccctaacccaatccatagccctaagcttaagcctaaccctaagccaaaccctagccctaaccatagccccaactccagcactaaccgtaatggtaaacttaatgataatcctaaccctaacacaaaccctTCTTTCCGGAGCTGGGGAAACCGACTCCAGAAATGCCATCTGAGGGAACAGACGTCCTGGCAGATAGAACAAACCAGGTGTGAGCACTGTCTTTCCAAAGTTACACCGAAGCCGTTGGAGGACAGGTCGGACCTCAGGCCTTCCCGCGGCACCAACTACTGTCGGCGGATTTGCGCATAGATCCTTCACAGCTGTTTCAAAGAACCATTCTGTGATTCTATGATCTTCCAGGACCCTTCCAAGCCACACCATCCTGTGGTTCTatcatcttccaggactcttgcaacacaaaccattctatggttctgtgatCACTAAGGAACCTCCCAAGCCACGCCGTCCTGCAGTTCTGtgatcttccaggacccttccaacacggaccatcctatggttctatgatCTTCCAGGACCCTCCTGTGCGGGTGATGTCACCATGACGTGATGACCTCACAGATGCCCTGGGGTGGGGCAGGGGCAGTGGGTCAGCGCGGAACCTGCTGGCCCCATTCTGCGGGTGGTGCTGGTCCAGCGAGGAGCTGTGCGAGTGGTGCAGTAATGCGGGCCCAGTGTGTCAGCAGAAGATTAAGGGCGGTGTGGCGTGCGAAGCTGGTGGAGGAGGAGCTGCTGGTGAGCTCTGGGTGCACAGACACAGAAGGGCCGGCGGGGGGAGCTGCCGGCTGGAGGCAGCAGAGGGCCGGGCACCTCCGGTGGGATGCAGAGCTGCCGGCAGCACCTCGGTGCCAACGCTGCTCCTCTCCCTTCACACAGGCTCATGCGGCCGTGGAGAAGTGCAAGGCCGTGGCCAGGGAATCCTTGATG
s chr32 0 1028 + 1028 CATCTAAACCAACACCTAATCCTAAACCTAAGGCCTTCCGGAATCCTAAACCTAAGCCAACAGctaaccctaacccatcccctaacccaatccatagccctaagcttaagcctaaccctaagccaaaccctagccctaaccatagccccaactccagcactaaccgtaatggtaaacttaatgataatcctaaccctaacacaaaccctTCTTTCCGGAGCTGGGGAAACCGACTCCAGAAATGCCATCTGAGGGAACAGACGTCCTGGCAGATAGAACAAACCAGGTGTGAGCACTGTCTTTCCAAAGTTACACCGAAGCCGTTGGAGGACAGGTCGGACCTCAGGCCTTCCCGCGGCACCAACTACTGTCGGCGGATTTGCGCATAGATCCTTCACAGCTGTTTCAAAGAACCATTCTGTGATTCTATGATCTTCCAGGACCCTTCCAAGCCACACCATCCTGTGGTTCTatcatcttccaggactcttgcaacacaaaccattctatggttctgtgatCACTAAGGAACCTCCCAAGCCACGCCGTCCTGCAGTTCTGtgatcttccaggacccttccaacacggaccatcctatggttctatgatCTTCCAGGACCCTCCTGTGCGGGTGATGTCACCATGACGTGATGACCTCACAGATGCCCTGGGGTGGGGCAGGGGCAGTGGGTCAGCGCGGAACCTGCTGGCCCCATTCTGCGGGTGGTGCTGGTCCAGCGAGGAGCTGTGCGAGTGGTGCAGTAATGCGGGCCCAGTGTGTCAGCAGAAGATTAAGGGCGGTGTGGCGTGCGAAGCTGGTGGAGGAGGAGCTGCTGGTGAGCTCTGGGTGCACAGACACAGAAGGGCCGGCGGGGGGAGCTGCCGGCTGGAGGCAGCAGAGGGCCGGGCACCTCCGGTGGGATGCAGAGCTGCCGGCAGCACCTCGGTGCCAACGCTGCTCCTCTCCCTTCACACAGGCTCATGCGGCCGTGGAGAAGTGCAAGGCCGTGGCCAGGGAATCCTTGATG
p                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

# Query sequences=2 normal letters=17803

>chrM
AATTTTATTTTTTAACCTAACTCCCCTACTAAGTGTACCCCCCCTTTCCCCAGGGGGGGTATACTATGCATAATCGTGCATACATTTATATACCACATATATTATGGTACCGGTAATATATACTATATATGTACTAAACCCATTATATGTATACGGGCATTAACCTATATTCCACATTTCTCCCAATGTCCATTCTATGCATGATCTAGGACATACTCATTTACCCTCCCCATAGACAGTTCCAAACCACTATCAAGCCACCTAACTATGAATGGTTACAGGACATAAATCTCACTCTCATGTTCTCCCCCCAACAAGTCACCTAACTATGAATGGTTACAGGACATACATTTAACTACCATGTTCTAACCCATTTGGTTATGCTCGCCGTATCAGATGGATTTATTGATCGTCCACCTCACGAGAGATCAGCAACCCCTGCCTGTAATGTACTTCATGACCAGTCTCAGGCCCATTCTTTCCCCCTACACCCCTCGCCCTACTTGCCTTCCACCGTACCTCTGGTTCCTCGGTCAGGCACATCCCATGCATAACTCCTGAACTTTCTCACTTTTCACGAAGTCATCTGTGGATTATCTTCCCCTCTTTAGTCCGTGATCGCGGCATCTTCTCTCTTCTATTGCTGTTGGTTCCTTCTCTTTTTGGGGCTTCTTCACAGGTTACCCTTCACAGTGCGGGTGCGAGTGCTATTCAAGTGAAGCCTGGACTACACCTGCGTTGCGTCCTATCCTAGTCCTCTCGTGTCCCTCGATGAGACGGTTTGCGTGTATGGGGAATCATCTTGACACTGATGCACTTTGGATCGCATTTGGTTATGGTTCTTCCACCCCCCCGGTAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATTTTCACTTCCTCTATTTTCTTCACAAAACTAGGAAATTCACCACAAttttttctttgttattttttaattttttttttattttttAAAAACATTTTTTAAAAAACTAAATTACATACAAACTACCGCATAAAATCCCTCAAACTATACAAACGTTTATCGTATAATATATATACATTATTGTTTATTCTATCATTATTAGAGAAACTCCACTACCAAAACCATCATTAAAACAAAAATTTACATGCCACTTAACTCCCCTCACAAACAATCGTTATTTATATTGTTAATTAGCAAACACAAAACCCGCCTTCTACCACTATAAAGCCCCCATAGCTTAACCCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAAAGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAACCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAGCTAAGATTAAAATGCAACCAAGCTGTCATAAGCCTAAGATCCACCTAAACCCAACCCAAATCCATCTTAGCCTCAACGATTAATTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCCATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGAGAAATGGGCTACATTTTCTAACATAGAACAAACGAAAAAGGATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTTCACAAGCCATCAACATCAATAAATATATACTTCCCCTCCCGGCTAAAGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACTACCAAGGCGTAGCTATAACTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACAAGGTCGCCTTGACTTGCCCCCCCTCTAGCCCGACAAACTCGTACCCTTAACATAAAAAACTTACCTCCCCCTCTTAACCAAAACATTATAAATTGTCCCAGTATAGGCGATAGAAAAGACTACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTGTCAAACGAATCTAAGTTCCCCCTTAACCCACCCCCTAAAGACACCCACCTTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAAAAGAACACAACCTCCTCCAGCGGATAATAATCACCCCTCCCCGCACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTCCCTCATTAAAAAATCTAAAACCCTATTTGACTCCCTCAACCAAAGCAGGTTAACCTATGACAATAGAAGAATCAATGCTAAAATGAGTAATCTGGAACCTATCCTCCTACGGCGTAAACTTACATTAATACATTATTAACAGAACTCAACTTATACCCCCACACTAACAAGCAATACGTATTCCTCAATCTGTTAAGCCAACCCAGGAGCGCCCACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCTTACAACCTTACACAGCCCCACTGGGTCCACCCACACATAAACCCCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAACCCACAGACCACAACTCTTCACTAAGACCAACTCCTCAAAGTACCAACAGTAACCAGACCCAATATAATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAAGGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTGCCCACCCTAACAAACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTCCCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTCCCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAACAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAATTTTAGTTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTACAGACCCCGGCACACTTTAGTGTACATCAACGAGTTTGCAACTCATTATGAACTTCACTACAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACTCAGCCATCTTACCTGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGCTGGGGCCGGCACAGGATGGACAGTTTACCCCCCTTTAGCCGGCAACCTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTTTCATTACTTAGCAGGTGTTTCCTCCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTGTCACAATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAGCAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACCATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGATATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTAACCTAACCTTTTTCCCCCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACTCATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTACAAGTGCAAGAAAGGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCAATTACATAGACCTGTCAAGACTAAATCACAGGTGCAAACCCTGTACATCTCATATGGCCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATCAAACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTGCCCTCCCCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGAATACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACCTCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGGGTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTACTGTCATCTTAACCATTAAGAAGCTATGCACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACCCTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTCTCCATCATACTCCTAACTTGATTCACCTTCTCTCTGCTTATCCAACCCAAACTTCTTTCATTCACTCTAACAAACAACCCTGCAAACAAAATTACAACAACTAAACCCACCCCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTTATCTCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCCCTAACGGCACTCATCCTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCACACCAAGCACACTCCTACCACATAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGGCCTAATCATATGGTTCCACTACAGCTCGACCACCCTACTGACAATAGGCCTCCTCTCTATACTTCTAGTCATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCCACCACACCCCAACTGTCCAAAAGGGCCTACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTTCCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAAACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTACATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGGTTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGTAGACATCATCTGACTCTTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCTAGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTATCAACCCAGAGAAGAGCAATGAACACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAAACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAATCGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACACCCTATAATAACCCTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGAACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAACTAAGACAGCTGGTTTCGACCCAGCAAATTATAGACCCACCTATAACTTTCTTATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCATAATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGAAAACCAAACCCCATCATTCGCCCTTGTACCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATCATCCTACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAACCCTAACCCTCTGAACAGGCATAGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATCACCAAAACCATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATACCTGAGCCCTCTCACTTACACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTATCCTAGCCCTAGAACTCTCAAGCCTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTCATAAACTTCTCCTCCTCCCTAGGCTACTTTAACCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGGCCCCGAAGGCCTTGCCAACCTTCATCTCACCATAACCAAAATCTCAACCACACTCCACACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTACAACGATCCTACTTATCCAAAAATAAACTAATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAAATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATTAGCAGTCTGCCTCATGACCCAAATCCTCACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAGCCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTACTCTCTGAAACCCTTAAACCGCCCGAATTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATCAACAGTAACCACCCCCACCTTTCAAAAATCAACGAGCCCTCCCAGAACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCAGGATAAGGATCCGCAGCTAATGACACAGAATAAACAAAAACCACCAACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAACACCCAAACTCACTAACCACCCACATCCTATCACAGACGCTACCACCAACCCCACCACCCCATAATACGGCGAAGGATTAGACGCCACAGCTAAAACCCCCAGCATAAAACAAATCCCAAGAAAAATCACAAAATAAGTCATATTATTCCCGCTTGGTTAGACCCCAAGGACTACGGCTTGAAAAGCCATTGTTGTTCTCAACTACGGGAAC
>chr32
CATCTAAACCAACACCTAATCCTAAACCTAAGGCCTTCCGGAATCCTAAACCTAAGCCAACAGctaaccctaacccatcccctaacccaatccatagccctaagcttaagcctaaccctaagccaaaccctagccctaaccatagccccaactccagcactaaccgtaatggtaaacttaatgataatcctaaccctaacacaaaccctTCTTTCCGGAGCTGGGGAAACCGACTCCAGAAATGCCATCTGAGGGAACAGACGTCCTGGCAGATAGAACAAACCAGGTGTGAGCACTGTCTTTCCAAAGTTACACCGAAGCCGTTGGAGGACAGGTCGGACCTCAGGCCTTCCCGCGGCACCAACTACTGTCGGCGGATTTGCGCATAGATCCTTCACAGCTGTTTCAAAGAACCATTCTGTGATTCTATGATCTTCCAGGACCCTTCCAAGCCACACCATCCTGTGGTTCTatcatcttccaggactcttgcaacacaaaccattctatggttctgtgatCACTAAGGAACCTCCCAAGCCACGCCGTCCTGCAGTTCTGtgatcttccaggacccttccaacacggaccatcctatggttctatgatCTTCCAGGACCCTCCTGTGCGGGTGATGTCACCATGACGTGATGACCTCACAGATGCCCTGGGGTGGGGCAGGGGCAGTGGGTCAGCGCGGAACCTGCTGGCCCCATTCTGCGGGTGGTGCTGGTCCAGCGAGGAGCTGTGCGAGTGGTGCAGTAATGCGGGCCCAGTGTGTCAGCAGAAGATTAAGGGCGGTGTGGCGTGCGAAGCTGGTGGAGGAGGAGCTGCTGGTGAGCTCTGGGTGCACAGACACAGAAGGGCCGGCGGGGGGAGCTGCCGGCTGGAGGCAGCAGAGGGCCGGGCACCTCCGGTGGGATGCAGAGCTGCCGGCAGCACCTCGGTGCCAACGCTGCTCCTCTCCCTTCACACAGGCTCATGCGGCCGTGGAGAAGTGCAAGGCCGTGGCCAGGGAATCCTTGATG
TEST lastal -r1 -fTAB -i1 -w0 -e40 /tmp/last-test galGal3-M-32.fa /dev/null
#
# a=7 b=1 A=7 B=1 e=40 d=-1 x=39 y=9 z=39 D=1e+06 E=1.13155e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=0 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
# batch 0
16775	chrM	0	16775	+	16775	chrM	0	16775	+	16775	16775	EG=0	E=0
43	chrM	246	65	+	16775	chrM	307	65	+	16775	65	EG=4e-08	E=6.8e-13
43	chrM	307	65	+	16775	chrM	246	65	+	16775	65	EG=4e-08	E=6.8e-13
# batch 1
1028	chr32	0	1028	+	1028	chr32	0	1028	+	1028	1028	EG=0	E=0
76	chr32	412	166	+	1028	chr32	456	166	+	1028	166	EG=7.9e-24	E=6.9e-30
76	chr32	456	166	+	1028	chr32	412	166	+	1028	166	EG=7.9e-24	E=6.9e-30
73	chr32	411	125	+	1028	chr32	499	125	+	1028	125	EG=2.1e-22	E=1.9e-28
73	chr32	499	125	+	1028	chr32	411	125	+	1028	125	EG=2.1e-22	E=1.9e-28
51	chr32	413	77	+	1028	chr32	545	77	+	1028	77	EG=6.3e-12	E=5.8e-18
51	chr32	545	77	+	1028	chr32	413	77	+	1028	77	EG=6.3e-12	E=5.8e-18
44	chr32	3	158	+	1028	chr32	51	158	+	1028	158	EG=1.4e-08	E=1.3e-14
44	chr32	51	158	+	1028	chr32	3	158	+	1028	158	EG=1.4e-08	E=1.3e-14
42	chr32	3	138	+	1028	chr32	69	138	+	1028	138	EG=1.2e-07	E=1.1e-13
42	chr32	69	138	+	1028	chr32	3	138	+	1028	138	EG=1.2e-07	E=1.1e-13
# Query sequences=2 normal letters=17803

TEST lastal -j0 -i1 -s0 /tmp/last-test galGal3-M-32.fa
#
# a=24 b=1 A=24 B=1 e=-1 d=-1 x=0 y=0 z=0 D=1e+06
# R=10 u=0 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.3815 j=0 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
#
# length	count
#
# batch 0
chrM
1	69355802
2	16559069
3	3950375
4	967050
5	235782
6	57598
7	14409
8	3694
9	925
10	245
11	68
12	18
13	6
14	1

# batch 1
chr32
1	4452070
2	1120721
3	278213
4	70148
5	17672
6	4411
7	1073
8	267
9	57
10	12
11	2
12	1

# Query sequences=2 normal letters=17803

TEST lastal -r6 -q18 -a21 -b9 -Q1 -e90 -a9 /tmp/last-test SRR001981-1k.fastq
#
# a=9 b=9 A=9 B=9 e=90 d=-1 x=89 y=44 z=89 D=1e+06 E=2.38195e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.22361 K=0.374766
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# batch 0
a score=91 EG=1.9e+04 E=0.00037
s chrM         963 25 + 16775 ttttttaattttttttttatttttt
s SRR001981.67   6 24 +    36 TTTTTTGGTTTTTTTTTT-TTTTTT
q SRR001981.67                III-IG2*&-+IIIIIIF-7III=I

a score=102 EG=1.7e+03 E=2.8e-05
s chrM          973 17 + 16775 ttttttttattttttAA
s SRR001981.107   7 17 +    36 TTTTTTTTATTTTTTAA
q SRR001981.107                IIIIIIIIGIIIIII:I

a score=91 EG=1.9e+04 E=0.00037
s chrM          957 29 + 16775 ttgttat-ttttta--attttttttttatttt
s SRR001981.202   0 31 -    36 TTGTTGTTTTTTTAACATTTTTTTTTT-TTTT
q SRR001981.202                I),I2*8&IIIII3II@IIIIIIIIII-IIII

a score=119 EG=37 E=5e-07
s chrM          952 33 + 16775 tttctttgttattttttaattttttttttattt
s SRR001981.279   0 33 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25D$37$

a score=104 EG=1.1e+03 E=1.7e-05
s chrM          949 33 + 16775 ttttttctttgttattttttaatttttttttta
s SRR001981.279   1 33 -    36 TTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTA
q SRR001981.279                (&%5.&%*$&-,7)+,*)-***2$I25D$37$I

a score=99 EG=3.2e+03 E=5.6e-05
s chrM          960 28 + 16775 ttattttttaattttttttttatttttt
s SRR001981.279   0 28 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25

a score=96 EG=6.3e+03 E=0.00011
s chrM          963 24 + 16775 ttttttaattttttttttattttt
s SRR001981.279   0 24 -    36 TTTTTTTGTTTTTTTTTTTTTTTT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2

a score=95 EG=7.9e+03 E=0.00014
s chrM          960 28 + 16775 ttattttttaattttttttttatttttt
s SRR001981.279   5 26 -    36 TTGTTTTTT--TTTTTTTTTTGTTTTTT
q SRR001981.279                .&%*$&-,7--)+,*)-***2$I25D$3

a score=91 EG=1.9e+04 E=0.00037
s chrM          949 32 + 16775 ttttttctttgttattttttaatttttttttt
s SRR001981.279   0 32 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25D$37

a score=90 EG=2.4e+04 E=0.00046
s chrM          956 35 + 16775 tttgttattttttaattttttttttattttttAAA
s SRR001981.279   0 35 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTAA
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25D$37$II

a score=102 EG=1.7e+03 E=2.8e-05
s chrM          968 17 + 16775 taattttttttttattt
s SRR001981.346   1 17 -    36 TAATTTTTTTTTTATTT
q SRR001981.346                BIIAIIEIIIIIIIIFI

a score=90 EG=2.4e+04 E=0.00046
s chrM          971 15 + 16775 ttttttttttatttt
s SRR001981.805  21 15 +    36 TTTTTTTTTTATTTT
q SRR001981.805                IIIIIIIIII;I0II

a score=91 EG=1.9e+04 E=0.00037
s chrM          959 27 + 16775 gttattttttaattttttttttatttt
s SRR001981.815   1 25 -    36 GTTTTTGTTT--TTTTTTTTTTATTTT
q SRR001981.815                23+)03/+<I--G,I'9I/D3+IEII7

# Query sequences=1000 normal letters=35941

TEST lastal -F12 -pBL62 -e40 -G ../examples/vertebrateMito.gc -j1 /tmp/last-test galGal3-M-32.fa
#
# a=11 b=2 A=11 B=2 F=12 e=40 d=40 x=39 y=31 z=39 D=1e+06 E=1.06052e+09
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=1 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.354842 K=0.156005
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=48 EG=5.8e+03 E=0.097
s Q2LCP8   394 27 +   491 FISKILILLPYMVLGRVYLTMLAFFLS
s chrM   11767 81 + 16775 FISTLIIIQPFIILAFSATELMLFYIS

a score=43 EG=3.4e+04 E=0.57
s Q2LCP8   239 24 +   491 LMTFYLTITQKLVTLMVLINLYQN
s chrM   11827 72 + 16775 LMLFYISFEATLIPTLILITRWGN

a score=42 EG=4.9e+04 E=0.82
s Q2LCP8   292 22 +   491 LRQQKLIRFIAYSAIVNSALLI
s chrM   12313 66 + 16775 LRQTDLKSLIAYSSVSHMGLVI

a score=41 EG=7e+04 E=1.2
s Q2LCP8   375 28 +   491 AIVYILVLMYLAGLPPMTNFISKILILL
s chrM   12550 84 + 16775 SVWWLLANLTNMALPPTTNLMAELTIMV

a score=83 EG=0.022 E=3.7e-07
s Q2LCP8  110  83 +   491 LILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDL
s chrM   5258 249 + 16775 LICTVSLIMGTSITISSNHWILAWTGLEINTLAIIPLISKSHHPRAIEATIKYFLTQSTASALILFSSMTNAWSTGQWDITQL

a score=89 EG=0.0026 E=4.4e-08
s Q2LCP8  211  53 +   491 LIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKLVTLMVLINLYQNL
s chrM   5528 159 + 16775 MLTMAIAIKLGLVPFHFWFPEVLQGSSLITALLLSTLMKLPPITLLLLTSQSL

a score=72 EG=1.1 E=1.9e-05
s Q2LCP8  379  52 +   491 ILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNL
s chrM   5972 156 + 16775 MLTLLSLAGLPPLTGFMPKWLIIQELTKQEMTPMATIITMLSLLSLFFYLRL

a score=44 EG=2.4e+04 E=0.4
s Q2LCP8  223  67 +   491 APFHGWLIDVYEGAGMLMTFYLTITQKLVTLMVLINLYQNLIIYTNAIMFTNGLIILILVTLVVGTI
s chrM   8369 201 + 16775 SPIMEELVEFHDHALMVALAICSLVLYLLTLMLMEKLSSNTVDAQEVELIWTILPAIVLVLLALPSL

a score=40 EG=1e+05 E=1.7
s Q2LCP8  138 23 +   491 ISSICFYILALNKNSRKGIEGGL
s chrM   7839 69 - 16775 VSSADFWALSVKHSWSSGDEGGL

a score=41 EG=7e+04 E=1.2
s Q2LCP8   0  34 +   491 MVCLFENLMNMIKYSIYILPLIILIVLSISIKKD
s chrM   196 102 - 16775 LVSLGVSFVSLALFLVYLGGMLVVFVYSVSLAAD

# Query sequences=2 normal letters=17803

TEST lastal -F12 -pBL62 -e40 -G2 -j1 /tmp/last-test galGal3-M-32.fa
#
# a=11 b=2 A=11 B=2 F=12 e=40 d=40 x=39 y=31 z=39 D=1e+06 E=1.06052e+09
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=1 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.354842 K=0.156005
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=48 EG=5.8e+03 E=0.097
s Q2LCP8   394 27 +   491 FISKILILLPYMVLGRVYLTMLAFFLS
s chrM   11767 81 + 16775 FISTLIIIQPFIILAFSATELMLFYIS

a score=43 EG=3.4e+04 E=0.57
s Q2LCP8   239 24 +   491 LMTFYLTITQKLVTLMVLINLYQN
s chrM   11827 72 + 16775 LMLFYISFEATLIPTLILITRWGN

a score=42 EG=4.9e+04 E=0.82
s Q2LCP8   292 22 +   491 LRQQKLIRFIAYSAIVNSALLI
s chrM   12313 66 + 16775 LRQTDLKSLIAYSSVSHMGLVI

a score=41 EG=7e+04 E=1.2
s Q2LCP8   375 28 +   491 AIVYILVLMYLAGLPPMTNFISKILILL
s chrM   12550 84 + 16775 SVWWLLANLTNMALPPTTNLMAELTIMV

a score=83 EG=0.022 E=3.7e-07
s Q2LCP8  110  83 +   491 LILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDL
s chrM   5258 249 + 16775 LICTVSLIMGTSITISSNHWILAWTGLEINTLAIIPLISKSHHPRAIEATIKYFLTQSTASALILFSSMTNAWSTGQWDITQL

a score=89 EG=0.0026 E=4.4e-08
s Q2LCP8  211  53 +   491 LIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKLVTLMVLINLYQNL
s chrM   5528 159 + 16775 MLTMAIAIKLGLVPFHFWFPEVLQGSSLITALLLSTLMKLPPITLLLLTSQSL

a score=72 EG=1.1 E=1.9e-05
s Q2LCP8  379  52 +   491 ILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNL
s chrM   5972 156 + 16775 MLTLLSLAGLPPLTGFMPKWLIIQELTKQEMTPMATIITMLSLLSLFFYLRL

a score=44 EG=2.4e+04 E=0.4
s Q2LCP8  223  67 +   491 APFHGWLIDVYEGAGMLMTFYLTITQKLVTLMVLINLYQNLIIYTNAIMFTNGLIILILVTLVVGTI
s chrM   8369 201 + 16775 SPIMEELVEFHDHALMVALAICSLVLYLLTLMLMEKLSSNTVDAQEVELIWTILPAIVLVLLALPSL

a score=40 EG=1e+05 E=1.7
s Q2LCP8  138 23 +   491 ISSICFYILALNKNSRKGIEGGL
s chrM   7839 69 - 16775 VSSADFWALSVKHSWSSGDEGGL

a score=41 EG=7e+04 E=1.2
s Q2LCP8   0  34 +   491 MVCLFENLMNMIKYSIYILPLIILIVLSISIKKD
s chrM   196 102 - 16775 LVSLGVSFVSLALFLVYLGGMLVVFVYSVSLAAD

# Query sequences=2 normal letters=17803

TEST lastal -r1 -s0 -f0 -e18 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=18 d=13 x=17 y=9 z=17 D=1e+06 E=3.38586e+07
# R=10 u=2 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
26	chrM	3996	46	+	16775	chrM	10159	46	-	16775	46	EG=2.5	E=4.2e-05
26	chrM	6570	46	+	16775	chrM	12733	46	-	16775	46	EG=2.5	E=4.2e-05
19	chrM	4168	33	+	16775	chrM	12574	33	-	16775	33	EG=5.4e+03	E=0.09
18	chrM	31	34	+	16775	chrM	16710	34	-	16775	34	EG=1.6e+04	E=0.27
# Query sequences=2 normal letters=17803

TEST lastal -r1 --reverse /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07
# R=10 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=28 EG=0.56 E=9.4e-06
s chrM 16261 128 + 16775 CCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATCAACAGTAACCACCCCCACCTTTCAAAAATCAACGAGCC
s chrM   386 128 + 16775 CCGAGCAACTAAAAACTTTCCACCCCCACCAATGACAACTACCGCCCCCACACAGAAAACGAGCCAACCTAAAATCACCTCAACGCCACAAAATAAGTACACCCCAACCCAACAAAAACCACCGACCC

a score=26 EG=5 E=8.4e-05
s chrM 16501 42 + 16775 AACAAAAACCACCAACATCCCCCCTAAATACACCAAAAATAA
s chrM   232 42 + 16775 AATAAAAACCACATAAATCCCCCCTACAACCACCAAAAACAA

a score=24 EG=45 E=0.00075
s chrM  1659 28 + 16775 TCCACCTAAACCCAACCCAAATCCATCT
s chrM 15088 28 + 16775 TCTACCTAAACCCAACCCAAATCCACCT

a score=23 EG=1.3e+02 E=0.0022
s chrM 14659 35 + 16775 CCCCCTAACTCACCGAATTAGCCCCTCAATCCTCC
s chrM  2081 35 + 16775 CCTCCTAACTCCCCGATTAAGCCACTCAATCCCCC

a score=34 EG=0.00078 E=7.5e-10
s chr32  13 46 + 1028 ACCTAATCCTAAACCTAAGGCCTTCCGGAATCCTAAACCTAAGCCA
s chr32 969 46 + 1028 ACCGAATCCAAATCCTAAGGCCTTCCGGAATCCAAATCCTAATCCA

# Query sequences=2 normal letters=17803

TEST lastal -s0 -f0 -p asymmetric.mat -e2000 /tmp/last-test galGal3-M-32.fa
#
# a=500 b=50 A=500 B=50 e=2000 d=1265 x=1999 y=992 z=1999 D=1e+06 E=5.62802e+07
# R=10 u=2 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=99.2157 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.00991067 K=0.062759
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A  53 -51 -51 -69  39 -51 -65  10  39 -65 -63   4   4  28
# C -11  88 -92 -11  19  34 -23 -11 -23  19   7 -17   7   7
# G -11 -92  88 -11 -23  34  19 -11  19 -23   7   7 -17   7
# T -69 -51 -51  53 -65 -51  39  10 -65  39  28   4   4 -63
# M  26  40 -69 -36  29   0 -42   0  13 -15 -22  -6   5  18
# S -11  34  34 -11   0  34   0 -11   0   0   7  -5  -5   7
# K -36 -69  40  26 -42   0  29   0 -15  13  18   5  -6 -22
# W  10 -51 -51  10   0 -51   0  10   0   0  -7   4   4  -7
# R  26 -69  40 -36  13   0 -15   0  29 -42 -22   5  -6  18
# Y -36  40 -69  26 -15   0  13   0 -42  29  18  -6   5 -22
# B -27  13  13  16 -18  13  15  -4 -18  15  15  -2  -2 -12
# D   3 -63  18   3  -7 -14   6   3   6  -7  -2   5  -2  -2
# H   3  18 -63   3   6 -14  -7   3  -7   6  -2  -2   5  -2
# V  16  13  13 -27  15  13 -18  -4  15 -18 -12  -2  -2  15
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
2475	chrM	3957	91	+	16775	chrM	10123	88	-	16775	31,3:0,57	EG=25	E=0.00041
2122	chrM	6564	57	+	16775	chrM	12727	57	-	16775	57	EG=8.1e+02	E=0.014
2102	chr32	665	274	+	1028	chrM	7941	268	-	16775	117,5:0,72,1:0,79	EG=9.9e+02	E=0.016
2089	chr32	690	217	+	1028	chrM	6958	219	-	16775	43,0:4,138,2:0,34	EG=1.1e+03	E=0.019
2060	chr32	721	195	+	1028	chrM	7144	192	-	16775	91,3:0,101	EG=1.5e+03	E=0.025
# Query sequences=2 normal letters=17803

TEST lastal -Q3 -e110 /tmp/last-test illumina100.txt
#
# a=21 b=9 A=21 B=9 e=110 d=66 x=109 y=44 z=109 D=1e+06 E=2.59649e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=3
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.228526 K=0.433378
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=118 EG=30 E=8.8e-07
s chr32                  110 31 + 1028 cctaaccctaagccaaaccctagccctaacc
s HWW-E2:1:1:10:1477#0/1  11 31 +   50 CCTAACCCTAANCCTAACCCTAACCCTAACC
q HWW-E2:1:1:10:1477#0/1               aaYaaa`aXaaB\bZ`Y_aa]_Q^b]G]O^a

a score=112 EG=1.2e+02 E=3.6e-06
s chr32                  97 40 + 1028 ccctaagcttaagcctaaccctaagccaaaccctagccct
s HWW-E2:1:1:10:1477#0/1 10 40 +   50 CCCTAACCCTAANCCTAACCCTAACCCTAACCCTAACCCT
q HWW-E2:1:1:10:1477#0/1              aaaYaaa`aXaaB\bZ`Y_aa]_Q^b]G]O^aaS\RMX]\

# Query sequences=100 normal letters=4900

TEST lastal -Q4 -e90 /tmp/last-test mouse_tss_prb.txt
#
# a=21 b=9 A=21 B=9 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.59649e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=4
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.228526 K=0.433378
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=112 EG=1.2e+02 E=1.9e-06
s chrM 956 32 + 16775 tttgttattttttaattttttttttatttttt
s 2      0 32 -    36 TATTTTATTTTTTGCTTTTTTTTTTTTTTTTT
q 2                   C@JK?B?BBEJFA>==TXBSVSDAFF`hhDNF

a score=97 EG=3.6e+03 E=6.9e-05
s chrM 960 28 + 16775 ttattttttaattttttttttatttttt
s 2      3 28 -    36 TTTATTTTTTGCTTTTTTTTTTTTTTTT
q 2                   K?B?BBEJFA>==TXBSVSDAFF`hhDN

a score=93 EG=9.1e+03 E=0.00018
s chrM 948 31 + 16775 Attttttctttgttattttttaatttttttt
s 2      1 31 -    36 ATTTTATTTTTTGCTTTTTTTTTTTTTTTTT
q 2                   @JK?B?BBEJFA>==TXBSVSDAFF`hhDNF

a score=92 EG=1.1e+04 E=0.00023
s chrM 958 30 + 16775 tgttattttttaattttttttttatttttt
s 2      0 30 -    36 TATTTTATTTTTTGCTTTTTTTTTTTTTTT
q 2                   C@JK?B?BBEJFA>==TXBSVSDAFF`hhD

a score=126 EG=4.8 E=6.6e-08
s chrM 2016 26 + 16775 GGTGGG-AGAAATGGGCTACATTTTCT
s 36      0 27 +    36 GGTGGGAAGAAATGGGCTACATTTTCT
q 36                   hhhhhhhhhhhhhhhhhhhhhhhhhhh

# Query sequences=100 normal letters=3600

TEST lastal -Q1 -j6 -e90 -a9 /tmp/last-test SRR001981-1k.fastq
#
# a=9 b=9 A=9 B=9 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.38195e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 g=1 j=6 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.22361 K=0.374766
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=91 EG=1.9e+04 E=0.00037 fullScore=97.4
s chrM         963 25 + 16775 ttttttaattttttttttatttttt
s SRR001981.67   6 24 +    36 TTTTTTGGTTTTTTTTTT-TTTTTT
q SRR001981.67                III-IG2*&-+IIIIIIF-7III=I
p                             &*,-..-/~~~~~~~~~~&%%%%%#

a score=102 EG=1.7e+03 E=2.8e-05 fullScore=109
s chrM          973 19 + 16775 ttttttttattttttAA-AA
s SRR001981.107   7 20 +    36 TTTTTTTTATTTTTTAATAA
q SRR001981.107                IIIIIIIIGIIIIII:IIII
p                              ~~~~~~~~~~~~~~~~~%$#

a score=91 EG=1.9e+04 E=0.00037 fullScore=106
s chrM          957 29 + 16775 ttgttattt-ttta--attttttttttatttt
s SRR001981.202   0 31 -    36 TTGTTGTTTTTTTAACATTTTTTTTTT-TTTT
q SRR001981.202                I),I2*8&IIIII3II@IIIIIIIIII-IIII
p                              $&((((&$#!$%&&'6~~~~~~~~~~~'%%%$

a score=119 EG=37 E=5e-07 fullScore=127
s chrM          952 33 + 16775 tttctttgttattttttaattttttttttattt
s SRR001981.279   0 33 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25D$37$
p                              %(*,~~~~~~--,++*)$$$$$$$$$$$$###"

a score=104 EG=1.1e+03 E=1.7e-05 fullScore=109
s chrM          949 33 + 16775 ttttttctttgttattttttaatttttttttta
s SRR001981.279   1 33 -    36 TTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTA
q SRR001981.279                (&%5.&%*$&-,7)+,*)-***2$I25D$37$I
p                              #%&'''((((()))*******+./~~~~~~~~~

a score=99 EG=3.2e+03 E=5.6e-05 fullScore=105
s chrM          960 28 + 16775 ttattttttaattttttttttatttttt
s SRR001981.279   0 28 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25
p                              $%&()***,-0~~~~~~~~~~+))&&%$

a score=96 EG=6.3e+03 E=0.00011 fullScore=103
s chrM          963 24 + 16775 ttttttaattttttttttattttt
s SRR001981.279   0 24 -    36 TTTTTTTGTTTTTTTTTTTTTTTT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2
p                              %()*+,,/~~~~~~~~~~(''&&$

a score=95 EG=7.9e+03 E=0.00014 fullScore=111
s chrM          957 31 + 16775 ttgt-tattttttaattttttttttatttttt
s SRR001981.279   1 30 -    36 TTTTTTGTTTTTT--TTTTTTTTTTGTTTTTT
q SRR001981.279                (&%5.&%*$&-,7--)+,*)-***2$I25D$3
p                              ####!#$%%%%%&((~~~~~~~~~~7,)'&$#

a score=90 EG=2.4e+04 E=0.00046 fullScore=104
s chrM          957 34 + 16775 ttgt-tattttttaattttttttttattttttAAA
s SRR001981.279   1 34 -    36 TTTTTTGTTTTTT-TTTTTTTTTTGTTTTTTTTAA
q SRR001981.279                (&%5.&%*$&-,7-)+,*)-***2$I25D$37$II
p                              """"!"#######$#~~~~~~~~~&$%%%%%%%$#

a score=102 EG=1.7e+03 E=2.8e-05 fullScore=108
s chrM          968 19 + 16775 taattttttttttattt-tt
s SRR001981.346   1 20 -    36 TAATTTTTTTTTTATTTATT
q SRR001981.346                BIIAIIEIIIIIIIIFIIII
p                              ~~~~~~~~~~~~~~~~~%##

a score=90 EG=2.4e+04 E=0.00046 fullScore=90.6
s chrM          971 15 + 16775 ttttttttttatttt
s SRR001981.805  21 15 +    36 TTTTTTTTTTATTTT
q SRR001981.805                IIIIIIIIII;I0II
p                              ~~~~~~~~~~~~~~~

a score=91 EG=1.9e+04 E=0.00037 fullScore=97.7
s chrM          960 26 + 16775 ttattttttaattttttttttatttt
s SRR001981.815   2 24 -    36 TTTTTGTTT--TTTTTTTTTTATTTT
q SRR001981.815                3+)03/+<I--G,I'9I/D3+IEII7
p                              $$$$$$%&&&&~~~~~~~~~~~~~~~

# Query sequences=1000 normal letters=35941

TEST lastal -r3 -q3 -a21 -c2 -e60 -f0 /tmp/last-test galGal3-M-32.fa
#
# a=21 b=1 A=21 B=1 c=2 e=60 d=39 x=59 y=27 z=59 D=1e+06 E=2.46893e+07
# R=10 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=2.73072 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.365408 K=0.245627
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   3  -3  -3  -3   1  -3  -3   1   1  -3  -3   1   1   1
# C  -3   3  -3  -3   1   1  -3  -3  -3   1   1  -3   1   1
# G  -3  -3   3  -3  -3   1   1  -3   1  -3   1   1  -3   1
# T  -3  -3  -3   3  -3  -3   1   1  -3   1   1   1   1  -3
# M   1   1  -3  -3   1   0  -3   0   0   0  -1  -1   1   1
# S  -3   1   1  -3   0   1   0  -3   0   0   1  -1  -1   1
# K  -3  -3   1   1  -3   0   1   0   0   0   1   1  -1  -1
# W   1  -3  -3   1   0  -3   0   1   0   0  -1   1   1  -1
# R   1  -3   1  -3   0   0   0   0   1  -3  -1   1  -1   1
# Y  -3   1  -3   1   0   0   0   0  -3   1   1  -1   1  -1
# B  -3   1   1   1  -1   1   1  -1  -1   1   1   0   0   0
# D   1  -3   1   1  -1  -1   1   1   1  -1   0   1   0   0
# H   1   1  -3   1   1  -1  -1   1  -1   1   0   0   1   0
# V   1   1   1  -3   1   1  -1  -1   1  -1   0   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
50325	chrM	0	16775	+	16775	chrM	0	16775	+	16775	16775	EG=0	E=0
63	chrM	5579	63	+	16775	chrM	13763	63	+	16775	63	EG=8.8e+02	E=0.015
63	chrM	9449	87	+	16775	chrM	15594	87	+	16775	15,0:3,35,6:3,31	EG=8.8e+02	E=0.015
63	chrM	13763	63	+	16775	chrM	5579	63	+	16775	63	EG=8.8e+02	E=0.015
63	chrM	15594	87	+	16775	chrM	9449	87	+	16775	15,3:0,35,3:6,31	EG=8.8e+02	E=0.015
60	chrM	12023	155	+	16775	chrM	13671	140	+	16775	29,13:1,76,5:2,32	EG=2.6e+03	E=0.044
60	chrM	13671	140	+	16775	chrM	12023	155	+	16775	29,1:13,76,2:5,32	EG=2.6e+03	E=0.044
78	chrM	3996	46	+	16775	chrM	10159	46	-	16775	46	EG=3.6	E=6.1e-05
78	chrM	6570	46	+	16775	chrM	12733	46	-	16775	46	EG=3.6	E=6.1e-05
3084	chr32	0	1028	+	1028	chr32	0	1028	+	1028	1028	EG=0	E=0
# Query sequences=2 normal letters=17803

TEST lastal -F12 -pBL62 -c2 -e40 -f0 /tmp/last-test galGal3-M-32.fa
#
# a=11 b=2 A=11 B=2 c=2 F=12 e=40 d=29 x=39 y=31 z=39 D=1e+06 E=8.45245e+08
# R=10 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.327048 K=0.105437
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
118	Q2LCP8	110	232	+	491	chrM	5258	639	+	16775	83,6:0,15,5:0,45,4:0,6,3:0,14,1:0,50	EG=1.4e-06	E=2.4e-11
72	Q2LCP8	379	52	+	491	chrM	5972	156	+	16775	52	EG=5.4	E=9e-05
55	Q2LCP8	101	87	+	491	chrM	11752	255	+	16775	18,3:0,28,0:3,38	EG=1.5e+03	E=0.024
51	Q2LCP8	170	49	+	491	chrM	13892	141	+	16775	10,0:3,23,3:0,13	EG=5.4e+03	E=0.09
48	Q2LCP8	394	27	+	491	chrM	11767	81	+	16775	27	EG=1.5e+04	E=0.24
46	Q2LCP8	16	38	+	491	chrM	14080	115	+	16775	7,0:1,31	EG=2.8e+04	E=0.47
44	Q2LCP8	27	57	+	491	chrM	13941	170	+	16775	5,0:-1,52	EG=5.4e+04	E=0.91
42	Q2LCP8	117	200	+	491	chrM	13445	576	+	16775	21,0:3,43,3:0,41,4:3,33,2:0,26,1:0,26	EG=1e+05	E=1.8
42	Q2LCP8	166	24	+	491	chrM	54	72	+	16775	24	EG=1e+05	E=1.8
42	Q2LCP8	292	22	+	491	chrM	12313	66	+	16775	22	EG=1e+05	E=1.8
42	Q2LCP8	388	15	+	491	chrM	12589	45	+	16775	15	EG=1e+05	E=1.8
41	Q2LCP8	10	66	+	491	chrM	11677	204	+	16775	52,0:6,14	EG=1.5e+05	E=2.4
41	Q2LCP8	15	44	+	491	chrM	8444	129	+	16775	13,1:0,30	EG=1.5e+05	E=2.4
41	Q2LCP8	375	42	+	491	chrM	5606	108	+	16775	18,6:0,18	EG=1.5e+05	E=2.4
40	Q2LCP8	374	30	+	491	chrM	7064	99	+	16775	18,0:9,12	EG=2e+05	E=3.4
43	Q2LCP8	202	20	+	491	chrM	9413	57	-	16775	9,1:0,10	EG=7.6e+04	E=1.3
41	Q2LCP8	0	34	+	491	chrM	196	102	-	16775	34	EG=1.5e+05	E=2.4
40	Q2LCP8	133	57	+	491	chrM	14165	168	-	16775	15,2:0,1,0:1,15,2:9,16,0:-1,6	EG=2e+05	E=3.4
40	Q2LCP8	406	20	+	491	chrM	2209	60	-	16775	20	EG=2e+05	E=3.4
# Query sequences=2 normal letters=17803

TEST lastal -j1 -f0 -e37 -m100 /tmp/last-test Q2LCP8.fa
#
# a=11 b=2 A=11 B=2 e=37 d=37 x=36 y=31 z=36 D=1e+06 E=1.84673e+09
# R=10 u=2 s=1 S=0 M=0 T=0 m=100 l=1 n=100 k=1 w=1000 t=3.08611 j=1 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.324032 K=0.140288
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
2399	Q2LCP8	0	491	+	491	Q2LCP8	0	491	+	491	491	EG=0	E=0
37	Q2LCP8	256	31	+	491	Q2LCP8	0	31	+	491	31	EG=4e+05	E=0.19
37	Q2LCP8	391	46	+	491	Q2LCP8	7	46	+	491	46	EG=4e+05	E=0.19
37	Q2LCP8	250	30	+	491	Q2LCP8	48	30	+	491	30	EG=4e+05	E=0.19
37	Q2LCP8	276	47	+	491	Q2LCP8	53	47	+	491	47	EG=4e+05	E=0.19
47	Q2LCP8	278	69	+	491	Q2LCP8	110	69	+	491	69	EG=1.6e+04	E=0.0071
41	Q2LCP8	244	34	+	491	Q2LCP8	238	34	+	491	34	EG=1.1e+05	E=0.051
41	Q2LCP8	238	34	+	491	Q2LCP8	244	34	+	491	34	EG=1.1e+05	E=0.051
37	Q2LCP8	48	30	+	491	Q2LCP8	250	30	+	491	30	EG=4e+05	E=0.19
55	Q2LCP8	324	96	+	491	Q2LCP8	255	96	+	491	96	EG=1.2e+03	E=0.00052
37	Q2LCP8	0	31	+	491	Q2LCP8	256	31	+	491	31	EG=4e+05	E=0.19
37	Q2LCP8	53	47	+	491	Q2LCP8	276	47	+	491	47	EG=4e+05	E=0.19
47	Q2LCP8	110	69	+	491	Q2LCP8	278	69	+	491	69	EG=1.6e+04	E=0.0071
55	Q2LCP8	255	96	+	491	Q2LCP8	324	96	+	491	96	EG=1.2e+03	E=0.00052
37	Q2LCP8	7	46	+	491	Q2LCP8	391	46	+	491	46	EG=4e+05	E=0.19
# Query sequences=1 normal letters=491

TEST lastal -Q1 -r1 -q2 -a1 -b1 -e44 -m100 -s0 /tmp/last-test sd-ccs-100.fq
#
# a=1 b=1 A=1 B=1 e=44 d=11 x=43 y=8 z=43 D=1e+06 E=1.06199e+07
# R=10 u=0 s=0 S=0 M=0 T=0 m=100 l=1 n=100 k=1 w=1000 t=0.750353 j=3 Q=1
# /tmp/last-test
# Reference sequences=100 normal letters=45801
# lambda=1.13866 K=0.257584
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -2  -2  -2   0  -2  -2   0   0  -2  -2   0   0   0
# C  -2   1  -2  -2   0   0  -2  -2  -2   0   0  -2   0   0
# G  -2  -2   1  -2  -2   0   0  -2   0  -2   0   0  -2   0
# T  -2  -2  -2   1  -2  -2   0   0  -2   0   0   0   0  -2
# M   0   0  -2  -2   0   0  -2   0   0   0   0   0   0   0
# S  -2   0   0  -2   0   0   0  -2   0   0   0   0   0   0
# K  -2  -2   0   0  -2   0   0   0   0   0   0   0   0   0
# W   0  -2  -2   0   0  -2   0   0   0   0   0   0   0   0
# R   0  -2   0  -2   0   0   0   0   0  -2   0   0   0   0
# Y  -2   0  -2   0   0   0   0   0  -2   0   0   0   0   0
# B  -2   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -2   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -2   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -2   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=212 EG=9.3e-93 E=1.2e-99
s S1_100   0 239 + 239 TGCGATGTTGACACGTCTTATCCTTCAATGTCGGATGCGAC-CTGCCGCGTCTTATCCGACCTACGGTTGGCACGCATCCGGCAATGTTGTAAGGCTACAACCCTAACGCA-ATTTCAGCGCCTGACGTTT-AACACGCCAGCACGCTCTG-CCGCCATTAACCCGAGATTACGCACAAAACGCAGCGGCGGCAGATTATTA-TGAATCCGGCATAAAACAGATCCA-ACCACTTTGCATAATGA
q S1_100               <5~\Nm@b;l]5Il:SUH\+NFNL?~Pb7f@&w~\IPXrZ?-TOV;H<a_UO~~]Ho\UWQJUQEA~KaF*;RFH;N_0~NX=JDvO<E6PTP78i4f~S9$^[F6kQSw@-/C9<SaIM4O~I_h?Cx*B-N;~>R+,8SU`PH)IBE:I-N~sNFF(RW}DrJ<TF_V4m=JEKOFfNH~pmVN/~h1?L~P.7JW;9@A-]9H+Co44GLa~*HK2-@nBIlNL-Zudk`*f<q<>;a'~i<
s S1_55  276 241 - 578 TGCGATGTTGACACGTCTTATCCTTCAATGTCGGATGCGACGCTGCCGCGTCT-ATCCGACC-ACGGTTGGCACGCATCCGGCAATGTTGTAAGGCTACA-CCCTAACGCATATTTCAGCGCCTGACGTTTCAACACGCCAGCACGCTCTGCCCGCCATTAACCCGAGATTACGCACAAAACGCAGCGGCGGCAGATTATTACTGAATCCGGCATAAAACAGATCCATACCAC-TTGCATAATGA
q S1_55                0+>@7>@AJX??)L5*>&)+ME:A9;:.&>&?=-%HAR'5)Z1-7;&8(6B,1-M59B(,8%-'LW5/D:F0)G8I,M8AK*,(TO+24702:%<>3'39-7RA4MA44%4D(3-K=BF&0I/>GFB9CB4A(/..:A!@+/<3>;';9,@B&;):0%3'?+A'=6.%CN*%9/11()EM*4>>9(-.8.8F>1DFD7H%4)?7,55*Q>/='D719.L<@,&B72-&(B1+J-1&'=M)8F;-?

a score=212 EG=9.3e-93 E=1.1e-106
s S1_55  61 241 + 578 TCATTATGCAA-GTGGTATGGATCTGTTTTATGCCGGATTCAGTAATAATCTGCCGCCGCTGCGTTTTGTGCGTAATCTCGGGTTAATGGCGGGCAGAGCGTGCTGGCGTGTTGAAACGTCAGGCGCTGAAATATGCGTTAGGG-TGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGT-GGTCGGAT-AGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCA
q S1_55               ?-;F8)M='&1-J+1B(&-27B&,@<L.917D'=/>Q*55,7?)4%H7DFD1>F8.8.-(9>>4*ME)(11/9%*NC%.6='A+?'3%0:);&B@,9;';>3</+@!A:../(A4BC9BFG>/I0&FB=K-3(D4%44AM4AR7-93'3><%:20742+OT(,*KA8M,I8G)0F:D/5WL'-%8,(B95M-1,B6(8&;7-1Z)5'RAH%-=?&>&.:;9A:EM+)&>*5L)??XJA@>7@>+0
s S1_100  0 239 - 239 TCATTATGCAAAGTGGT-TGGATCTGTTTTATGCCGGATTCA-TAATAATCTGCCGCCGCTGCGTTTTGTGCGTAATCTCGGGTTAATGGCGG-CAGAGCGTGCTGGCGTGTT-AAACGTCAGGCGCTGAAAT-TGCGTTAGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAG-GTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCA
q S1_100              <i~'a;><q<f*`kduZ-LNlIBn@-2KH*~aLG44oC+H9]-A@9;WJ7.P~L?1h~/NVmp~HNfFOKEJ=m4V_FT<JrD}WR(FFNs~N-I:EBI)HP`US8,+R>~;N-B*xC?h_I~O4MIaS<9C/-@wSQk6F[^$9S~f4i87PTP6E<OvDJ=XN~0_N;HFR;*FaK~AEQUJQWU\oH]~~OU_a<H;VOT-?ZrXPI\~w&@f7bP~?LNFN+\HUS:lI5]l;b@mN\~5<

# Query sequences=100 normal letters=45801

TEST lastal -r6 -q18 -a21 -b9 -Q1 -e90 -a9 -f0 /tmp/last-test0 SRR001981-1k.fastq
#
# a=9 b=9 A=9 B=9 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.97882e+07
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1
# /tmp/last-test0
# Reference sequences=1 normal letters=16775
# lambda=0.22361 K=0.374766
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
91	chrM	963	25	+	16775	SRR001981.67	6	24	+	36	18,1:0,6	EG=1.8e+04	E=0.00035
102	chrM	973	17	+	16775	SRR001981.107	7	17	+	36	17	EG=1.6e+03	E=2.6e-05
91	chrM	957	29	+	16775	SRR001981.202	0	31	-	36	7,0:1,6,0:2,11,1:0,4	EG=1.8e+04	E=0.00035
119	chrM	952	33	+	16775	SRR001981.279	0	33	-	36	33	EG=35	E=4.7e-07
104	chrM	949	33	+	16775	SRR001981.279	1	33	-	36	33	EG=1e+03	E=1.6e-05
99	chrM	960	28	+	16775	SRR001981.279	0	28	-	36	28	EG=3.1e+03	E=5.3e-05
96	chrM	963	24	+	16775	SRR001981.279	0	24	-	36	24	EG=6e+03	E=0.00011
95	chrM	960	28	+	16775	SRR001981.279	5	26	-	36	9,2:0,17	EG=7.5e+03	E=0.00014
91	chrM	949	32	+	16775	SRR001981.279	0	32	-	36	32	EG=1.8e+04	E=0.00035
90	chrM	956	35	+	16775	SRR001981.279	0	35	-	36	35	EG=2.3e+04	E=0.00044
102	chrM	968	17	+	16775	SRR001981.346	1	17	-	36	17	EG=1.6e+03	E=2.6e-05
90	chrM	971	15	+	16775	SRR001981.805	21	15	+	36	15	EG=2.3e+04	E=0.00044
91	chrM	959	27	+	16775	SRR001981.815	1	25	-	36	10,2:0,15	EG=1.8e+04	E=0.00035
# Query sequences=1000 normal letters=35941

TEST lastal -r1 -s0 -f0 -e18 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=18 d=13 x=17 y=9 z=17 D=1e+06 E=3.38586e+07
# R=10 u=2 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
26	chrM	3996	46	+	16775	chrM	10159	46	-	16775	46	EG=2.5	E=4.2e-05
26	chrM	6570	46	+	16775	chrM	12733	46	-	16775	46	EG=2.5	E=4.2e-05
19	chrM	4168	33	+	16775	chrM	12574	33	-	16775	33	EG=5.4e+03	E=0.09
18	chrM	31	34	+	16775	chrM	16710	34	-	16775	34	EG=1.6e+04	E=0.27
# Query sequences=2 normal letters=17803

TEST lastal -r1 -s0 -f0 -e18 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=18 d=13 x=17 y=9 z=17 D=1e+06 E=3.38586e+07
# R=10 u=2 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
26	chrM	3996	46	+	16775	chrM	10159	46	-	16775	46	EG=2.5	E=4.2e-05
26	chrM	6570	46	+	16775	chrM	12733	46	-	16775	46	EG=2.5	E=4.2e-05
19	chrM	4168	33	+	16775	chrM	12574	33	-	16775	33	EG=5.4e+03	E=0.09
18	chrM	31	34	+	16775	chrM	16710	34	-	16775	34	EG=1.6e+04	E=0.27
# Query sequences=2 normal letters=17803

TEST lastal -T1 -Q1 -e60 -a9 -f0 /tmp/last-test SRR001981-1k.fastq
#
# a=9 b=9 A=9 B=9 e=60 d=60 x=59 y=44 z=59 D=1e+06 E=2.38195e+07
# R=10 u=0 s=2 S=0 M=0 T=1 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.22361 K=0.374766
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
98	chrM	952	34	+	16775	SRR001981.279	0	36	-	36	33,0:2,1	EG=4.1e+03	E=7.1e-05
77	chrM	948	35	+	16775	SRR001981.279	0	36	-	36	34,0:1,1	EG=4.4e+05	E=0.0096
72	chrM	956	35	+	16775	SRR001981.279	0	36	-	36	35,0:1	EG=1.4e+06	E=0.031
60	chrM	950	36	+	16775	SRR001981.597	0	36	-	36	19,2:0,10,1:0,4,0:3	EG=2e+07	E=0.5
# Query sequences=1000 normal letters=35941

TEST lastal -T1 -Q1 -e60 -a9 -j4 /tmp/last-test SRR001981-1k.fastq
#
# a=9 b=9 A=9 B=9 e=60 d=60 x=59 y=44 z=59 D=1e+06 E=2.38195e+07
# R=10 u=0 s=2 S=0 M=0 T=1 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=4 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.22361 K=0.374766
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=98 EG=4.1e+03 E=7.1e-05 fullScore=108
s chrM          952 34 + 16775 tttctttgttattttttaattttttttttattt--t
s SRR001981.279   0 36 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTAAT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25D$37$III
p                              ))*+~~~~~~,+**))(#""""""""""""""!""!

a score=77 EG=4.4e+05 E=0.0096 fullScore=91.1
s chrM          948 35 + 16775 Attttttctttgttattttttaatttttttttta-t
s SRR001981.279   0 36 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTAAT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25D$37$III
p                              !!""##$$%%%%&'(((())))*+,~~~~~~~~~$#

a score=72 EG=1.4e+06 E=0.031 fullScore=86.7
s chrM          956 35 + 16775 tttgttattttttaattttttttttattttttAAA-
s SRR001981.279   0 36 -    36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTAAT
q SRR001981.279                5(&%5.&%*$&-,7)+,*)-***2$I25D$37$III
p                              """""""!!!!!!!"~~~~~~~~~&$%&&&&&&&&$

a score=60 EG=2e+07 E=0.5 fullScore=65.1
s chrM          950 36 + 16775 tttttctttgttattttttaattttttttttatttt---
s SRR001981.597   0 36 -    36 TTTTTTTTTCTCTTTTTTT--TTTTTTTTTT-TTTTGCC
q SRR001981.597                I@.9@$,%/*%3(CIIIII--IIIIIIIIII-IIIIIII
p                              ))*++,111.,((++,,,,0/~~~~~~~~~~(&&&%).)

# Query sequences=1000 normal letters=35941

TEST lastal -T1 -Q1 -e60 -j1 -fTAB /tmp/last-test SRR001981-1k.fastq
#
# a=21 b=9 A=21 B=9 e=60 d=60 x=59 y=44 z=59 D=1e+06 E=2.56174e+07
# R=10 u=0 s=2 S=0 M=0 T=1 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=1 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.229011 K=0.710602
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
77	chrM	948	36	+	16775	SRR001981.279	0	36	-	36	36	EG=5.6e+05	E=0.013
89	chrM	952	36	+	16775	SRR001981.279	0	36	-	36	36	EG=3.6e+04	E=0.00073
61	chrM	957	36	+	16775	SRR001981.279	0	36	-	36	36	EG=2.2e+07	E=0.55
72	chrM	956	36	+	16775	SRR001981.279	0	36	-	36	36	EG=1.7e+06	E=0.041
62	chrM	955	36	+	16775	SRR001981.279	0	36	-	36	36	EG=1.7e+07	E=0.43
# Query sequences=1000 normal letters=35941

TEST lastal -r1 -q1 -a7 -b1 -s0 -e18 -j7 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=18 d=13 x=17 y=9 z=17 D=1e+06 E=3.38586e+07
# R=10 u=0 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=7 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=26 EG=2.5 E=4.2e-05 fullScore=28.9
s chrM  3996 46 + 16775 AGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTAC
s chrM 10159 46 - 16775 AGGCTGTAGTCCTTTTTACAGAGGTTCAATTCCTCTTCTTATCGAC
p                       (,./001467;@CFGHJL~~~~~~~~~~~JIGC?:610..,**(('
c 7.98 0.000238 0.438 3.96 1.01 11.5 0.0931 4.04 0.0213 9.25e-05 6.65 1.16 0.213 0.0045 1.82 10.9 49.8 0.0223 0.00228 0.00921 0.00124

a score=26 EG=2.5 E=4.2e-05 fullScore=28.9
s chrM  6570 46 + 16775 GTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCT
s chrM 12733 46 - 16775 GTAGCTAGGGAGAGGATTTGAACCTCTGGATAAAGGGCTTAAGCCT
p                       '((**,..016:?CGIJ~~~~~~~~~~~LJHGFC@;764100/.,(
c 10.9 1.16 4.04 3.96 1.82 6.65 0.0931 0.438 0.0045 9.25e-05 11.5 0.000238 0.213 0.0213 1.01 7.98 49.8 0.00228 0.0223 0.00124 0.00921

a score=21 EG=6e+02 E=0.01 fullScore=23.9
s chrM   977 35 + 16775 ttttattttttAAAAACATTTTTTAAAAAACTAAA
s chrM 15763 35 - 16775 TTTAGTTTTTTAAAAAATGTTTTTaaaaaataaaa
p                       ')**,~~~~~~~~~~~9888888876642.*))('
c 15.7 0.000253 1.29 1.55 1.84 0.108 0.000284 1.24 0.107 3.71e-05 0.109 0.000182 4.86 0.108 1.85 15.9 44.7 0.114 0.112 0.063 0.0586

a score=19 EG=5.4e+03 E=0.09 fullScore=21.4
s chrM  4168 33 + 16775 CCGAAAGGGCCCAAACATTGTGGGCCCTTTTGG
s chrM 12574 33 - 16775 CCAAAAGGGCCCACAATGTTTGGGCCCTTTCGG
p                       '*+~~~~~~~~~~JIGGGGGGGFEC@<73.)('
c 5 1 0.0029 1.09 1.51 8.06 0.0333 0.00288 1.05 0.000188 8.01 1 0.0011 1.01 1.49 4.94 34.2 0.00686 0.00689 0.00493 0.00492

a score=18 EG=1.6e+04 E=0.27 fullScore=20
s chrM    31 34 + 16775 AGTGTACCCCCCCTTTCCCCAGGGGGGGTATACT
s chrM 16710 34 - 16775 AGTATACCCCCCCTGGGGAAAGGGGGGGTACACT
p                       (+./~~~~~~~~~~BA@@@@@@@@@?=:62-,*'
c 4.89 0.00223 0.25 0.93 2.08 8.23 2 0.247 0.963 3.26e-07 8.23 0.00218 0.711 0.945 2.08 4.91 36.5 0.00322 0.00317 0.00194 0.00191

# Query sequences=2 normal letters=17803

TEST lastal -T1 -Q1 -e60 -a9 -f0 /tmp/last-test SRR001981-1k.fastq
#
# a=9 b=9 A=9 B=9 e=60 d=52 x=59 y=44 z=59 D=1e+06 E=6.81745e+08
# R=01 u=0 s=2 S=0 M=0 T=1 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=700
# lambda=0.22361 K=0.374766
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
85	chrM	672	28	+	700	SRR001981.202	0	30	-	36	7,0:1,6,0:2,11,1:0,3	EG=2.9e+03	E=5.7e-05
119	chrM	667	33	+	700	SRR001981.279	0	33	-	36	33	EG=1.4	E=1.9e-08
85	chrM	678	22	+	700	SRR001981.279	0	22	-	36	22	EG=2.9e+03	E=5.7e-05
81	chrM	675	25	+	700	SRR001981.279	0	25	-	36	25	EG=7e+03	E=0.00015
77	chrM	671	29	+	700	SRR001981.279	0	28	-	36	14,1:0,14	EG=1.7e+04	E=0.00037
76	chrM	676	24	+	700	SRR001981.279	0	24	-	36	24	EG=2.1e+04	E=0.00047
69	chrM	662	36	+	700	SRR001981.279	0	36	-	36	2,1:0,32,0:1,1	EG=1e+05	E=0.0024
63	chrM	679	21	+	700	SRR001981.279	0	21	-	36	21	EG=3.9e+05	E=0.0096
84	chrM	683	17	+	700	SRR001981.346	0	18	-	36	0:1,17	EG=3.6e+03	E=7.3e-05
77	chrM	676	24	+	700	SRR001981.570	0	24	-	36	6,0:1,4,1:0,13	EG=1.7e+04	E=0.00037
90	chrM	665	35	+	700	SRR001981.597	0	32	-	36	19,2:0,10,1:0,3	EG=9.3e+02	E=1.8e-05
63	chrM	675	25	+	700	SRR001981.597	0	25	-	36	11,0:1,10,1:0,3	EG=3.9e+05	E=0.0096
62	chrM	666	34	+	700	SRR001981.597	0	30	-	36	4,1:0,13,2:0,10,1:0,3	EG=4.9e+05	E=0.012
77	chrM	673	27	+	700	SRR001981.815	0	25	-	36	11,2:0,14	EG=1.7e+04	E=0.00037
# Query sequences=1000 normal letters=35941

TEST lastal -r1 -e34 -k128 -f0 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=34 d=11 x=33 y=9 z=33 D=1e+06 E=1.13155e+07
# R=10 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=128 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1522	chrM	8638	5211	+	16571	chrM	9353	5229	+	16775	1414,0:1,14,0:3,340,0:3,49,0:3,1756,0:8,110,6:0,91,0:9,553,3:0,875	EG=0	E=0
1107	chrM	5764	2482	+	16571	chrM	6510	2477	+	16775	78,0:2,35,0:3,17,8:0,450,3:0,1085,3:0,67,0:5,57,0:1,19,0:1,152,3:0,505	EG=0	E=0
627	chrM	3334	2397	+	16571	chrM	4097	2410	+	16775	914,2:0,27,0:2,44,0:9,66,3:0,61,0:1,990,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80	EG=3.7e-286	E=5.7e-291
524	chrM	14756	1124	+	16571	chrM	14904	1124	+	16775	1124	EG=3.9e-237	E=6.2e-242
260	chrM	595	1011	+	16571	chrM	1243	1033	+	16775	56,1:0,82,0:3,62,0:1,17,0:1,55,1:0,60,0:1,114,0:8,108,0:2,97,0:4,33,0:1,27,0:1,45,1:0,32,1:0,61,0:6,55,2:0,101	EG=1.9e-111	E=3e-116
251	chrM	2409	754	+	16571	chrM	3112	772	+	16775	41,2:0,38,0:1,32,0:2,37,0:3,235,0:6,58,0:1,39,0:6,15,0:1,148,0:1,53,1:0,55	EG=3.6e-107	E=5.9e-112
95	chrM	1742	281	+	16571	chrM	2432	295	+	16775	26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83	EG=6.6e-33	E=1.1e-37
48	chrM	14425	318	+	16571	chrM	16456	319	+	16775	247,0:2,54,1:0,16	EG=1.6e-10	E=2.6e-15
# Query sequences=2 normal letters=17803

TEST lastal -pHOXD70 -e4500 -k128 -f0 /tmp/last-test galGal3-M-32.fa
#
# a=400 b=30 A=400 B=30 e=4500 d=1104 x=4499 y=962 z=4499 D=1e+06 E=3.02506e+07
# R=10 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=128 w=1000 t=96.1735 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=0.00944633 K=0.095059
#
#     A   C   G   T   N   M   S   K   W   R   Y   B   D   H   V
# A  91 -114 -31 -123 -100  40 -64 -69  34  52 -119 -81  19   8  22
# C -114 100 -125 -31 -100  38  42 -64 -64 -119  52  22 -79  19   9
# G -31 -125 100 -114 -100 -64  42  38 -64  52 -119   9  19 -79  22
# T -123 -31 -114  91 -100 -69 -64  40  34 -119  52  22   8  19 -81
# N -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100
# M  40  38 -64 -69 -100  39   0 -67   0   4  -4 -20 -16  13  16
# S -64  42  42 -64 -100   0  42   0 -64   0   0  16 -18 -18  16
# K -69 -64  38  40 -100 -67   0  39   0  -4   4  16  13 -16 -20
# W  34 -64 -64  34 -100   0 -64   0  34   0   0 -16  13  13 -16
# R  52 -119  52 -119 -100   4   0  -4   0  52 -119 -29  19 -24  22
# Y -119  52 -119  52 -100  -4   0   4   0 -119  52  22 -24  19 -29
# B -81  22   9  22 -100 -20  16  16 -16 -29  22  18  -8  -3 -10
# D  19 -79  19   8 -100 -16 -18  13  13  19 -24  -8  15  -7  -3
# H   8  19 -79  19 -100  13 -18 -16  13 -24  19  -3  -7  15  -8
# V  22   9  22 -81 -100  16  16 -20 -16  22 -29 -10  -3  -8  18
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
473071	chrM	554	13599	+	16571	chrM	1195	13697	+	16775	23,0:8,17,1:0,56,1:0,82,0:3,35,0:2,4,2:0,22,0:1,19,0:1,55,1:0,58,0:1,20,1:0,18,0:1,37,0:1,16,2:0,18,0:9,110,1:0,3,0:3,95,0:4,30,0:1,34,0:1,38,1:0,33,1:0,60,0:6,57,0:5,34,7:0,55,1:0,13,0:1,5,0:1,28,0:3,6,0:13,16,9:0,7,0:2,12,0:12,11,3:0,19,7:0,5,0:8,20,0:1,17,0:4,25,0:4,11,0:2,56,1:0,40,0:1,27,0:3,93,0:1,41,4:0,11,0:16,38,1:0,29,3:0,7,0:6,31,0:1,17,7:0,22,1:0,15,1:0,24,2:0,37,0:1,11,0:1,11,5:0,11,9:0,8,0:2,17,0:1,13,0:3,41,2:0,37,0:1,33,0:2,37,0:3,184,6:0,9,2:0,17,0:11,5,0:9,6,1:0,13,5:0,43,1:0,14,0:2,7,0:10,7,1:0,14,3:0,9,0:1,148,0:1,53,1:0,67,0:6,20,0:5,19,0:3,16,0:1,44,1:0,29,0:7,20,0:21,930,2:0,22,0:2,27,1:0,11,0:10,70,3:0,63,0:1,36,3:0,11,0:3,167,0:3,13,3:0,44,0:1,18,1:0,377,0:4,20,0:2,10,2:0,7,4:0,22,0:3,14,3:0,78,0:2,13,2:0,17,0:2,9,2:0,60,0:3,20,3:0,4,5:0,15,0:5,5,3:0,79,0:1,7,0:4,37,0:3,15,1:0,68,0:2,80,30:0,81,0:2,35,0:3,17,8:0,450,3:0,1085,3:0,56,0:4,16,0:1,53,0:1,18,0:1,150,2:0,4,1:0,503,5:0,5,15:0,12,0:1,9,2:0,14,0:2,28,2:0,20,2:0,41,9:0,33,5:0,49,2:0,13,0:8,15,0:2,54,9:0,31,0:8,16,0:4,243,0:7,10,7:0,151,0:9,24,1:0,19,0:4,8,12:0,932,0:1,21,1:0,12,9:0,8,0:1,16,0:9,11,0:3,283,0:3,49,0:3,35,0:6,23,6:0,78,4:0,9,0:3,6,0:1,181,0:1,20,0:2,10,3:0,49,1:0,17,0:9,7,14:0,12,0:6,1099,0:2,13,2:0,168,0:8,136,1:0,7,0:1,14,0:12,45,6:0,8,4:0,7,8:0,17,0:9,76,0:7,22,1:0,8,6:0,389,3:0,165,13:0,11,0:7,10,0:6,513,0:3,8,3:0,42,0:5,13,4:0,21,1:0,96,0:8,17,1:0,6,7:0,17,3:0,13,0:3,132,0:3,78,0:3,10	EG=0	E=0
58424	chrM	14729	1565	+	16571	chrM	14874	1560	+	16775	23,0:1,7,0:2,1121,0:2,25,1:0,31,0:6,14,4:0,20,0:2,49,17:0,19,2:0,8,0:8,18,1:0,18,0:14,35,3:0,31,0:1,21,9:0,2,3:0,9,1:0,24,0:1,19,0:4,15,5:0,10	EG=5.6e-228	E=8.2e-233
8383	chrM	14155	588	+	16571	chrM	16213	562	+	16775	121,3:0,23,2:0,23,4:0,64,5:0,10,4:0,2,9:0,118,2:0,8,0:2,14,0:1,5,1:0,99,0:2,54,1:0,16	EG=1.3e-22	E=2.1e-27
# Query sequences=2 normal letters=17803

TEST lastal -r1 -e34 -C2 -f0 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=34 d=12 x=33 y=9 z=33 D=1e+06 E=1.13155e+07
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 C=2 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1522	chrM	8638	5211	+	16571	chrM	9353	5229	+	16775	1414,0:1,14,0:3,340,0:3,49,0:3,1756,0:8,110,6:0,91,0:9,553,3:0,875	EG=0	E=0
1107	chrM	5764	2482	+	16571	chrM	6510	2477	+	16775	78,0:2,35,0:3,17,8:0,450,3:0,1085,3:0,67,0:5,57,0:1,19,0:1,152,3:0,505	EG=0	E=0
627	chrM	3334	2397	+	16571	chrM	4097	2410	+	16775	914,2:0,27,0:2,44,0:9,66,3:0,61,0:1,990,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80	EG=3.7e-286	E=5.7e-291
524	chrM	14756	1124	+	16571	chrM	14904	1124	+	16775	1124	EG=3.9e-237	E=6.2e-242
260	chrM	595	1011	+	16571	chrM	1243	1033	+	16775	56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,114,0:8,108,0:2,97,0:4,33,0:1,27,0:1,45,1:0,32,1:0,61,0:6,55,2:0,101	EG=1.9e-111	E=3e-116
251	chrM	2409	754	+	16571	chrM	3112	772	+	16775	41,2:0,38,0:1,32,0:2,37,0:3,235,0:6,58,0:1,39,0:6,15,0:1,148,0:1,53,1:0,55	EG=3.6e-107	E=5.9e-112
95	chrM	1742	281	+	16571	chrM	2432	295	+	16775	26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83	EG=6.6e-33	E=1.1e-37
48	chrM	14425	318	+	16571	chrM	16456	319	+	16775	247,0:2,54,1:0,16	EG=1.6e-10	E=2.6e-15
# Query sequences=2 normal letters=17803

TEST lastal -r1 -e34 -f0 -l30 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=34 d=12 x=33 y=9 z=33 D=1e+06 E=1.13155e+07
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=30 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1522	chrM	8638	5211	+	16571	chrM	9353	5229	+	16775	1414,0:1,14,0:3,340,0:3,49,0:3,1756,0:8,110,6:0,91,0:9,553,3:0,875	EG=0	E=0
1107	chrM	5764	2482	+	16571	chrM	6510	2477	+	16775	78,0:2,35,0:3,17,8:0,450,3:0,1085,3:0,67,0:5,57,0:1,19,0:1,152,3:0,505	EG=0	E=0
627	chrM	3334	2397	+	16571	chrM	4097	2410	+	16775	914,2:0,27,0:2,44,0:9,66,3:0,61,0:1,990,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80	EG=3.7e-286	E=5.7e-291
524	chrM	14756	1124	+	16571	chrM	14904	1124	+	16775	1124	EG=3.9e-237	E=6.2e-242
260	chrM	595	1011	+	16571	chrM	1243	1033	+	16775	56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,114,0:8,108,0:2,97,0:4,33,0:1,27,0:1,45,1:0,32,1:0,61,0:6,55,2:0,101	EG=1.9e-111	E=3e-116
251	chrM	2409	754	+	16571	chrM	3112	772	+	16775	41,2:0,38,0:1,32,0:2,37,0:3,235,0:6,58,0:1,39,0:6,15,0:1,148,0:1,53,1:0,55	EG=3.6e-107	E=5.9e-112
95	chrM	1742	281	+	16571	chrM	2432	295	+	16775	26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83	EG=6.6e-33	E=1.1e-37
# Query sequences=2 normal letters=17803

TEST lastal -j0 -l4 -L11 -s0 /tmp/last-test galGal3-M-32.fa
#
# a=24 b=1 A=24 B=1 e=-1 d=-1 x=0 y=0 z=0 D=1e+06
# R=01 u=0 s=0 S=0 M=0 T=0 m=10 l=4 L=11 n=10 k=1 w=1000 t=4.3815 j=0 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
#
# length	count
#
chrM
4	967050
5	235782
6	57598
7	14409
8	3694
9	925
10	245
11	68

chr32
4	70148
5	17672
6	4411
7	1073
8	267
9	57
10	12
11	2

# Query sequences=2 normal letters=17803

TEST lastal -r1 -e5 -f0 /tmp/last-test ttttt.fa
5	tttttccccc	0	5	+	10	ttttt	0	5	+	5	5	EG=7.5e+06	E=0.02

TEST lastal -r1 -e40 /tmp/last-test hg19-M.fa
#
# a=7 b=1 A=7 B=1 e=40 d=13 x=39 y=9 z=39 D=1e+06 E=1.13155e+07
# R=01 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=1696 EG=0 E=0
s chrM 4097 4890 + 16775 ATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTcctcccccttcctcttcattattaCTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTActctctactctGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTCCCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTCCCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCC--AATCTAAGGAAGCGTGCCTGAACAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCT---ATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATtaacaatagcaatcgcaatcaaattaggactagtcccattccACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACtactctccaccctaataaaactccccccaatcacactcctccTCCTAACATCACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACacaaacacgaAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCcctagccCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAAcaagaaataacCCCaatagccacaatcatcacaatactatcactcCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCTAAACACCCC---CACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTTTCTGCC-CAACTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAATTTTAGTTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTAC------------------------------AGACCCCGGCACACTTTAGTGTACATCAACGAGTTTGCAACTCATTATGAACTTCACTACAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACTCAGCCATCTTACCTG--------TGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCcctccctccttccttcTCCTACTAGCCTCATCTACCGTAGAAGCTGGGGCCGGCACAGGATGGACAGTTTACCCCCCTTTAGCCGGCAACCTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTTTCATT---ACTTAGCAGGTGTTTCCTCCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTGTCACAATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAGCAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACCATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGATATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTAACCTAACCTTTTTCCCCCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCAtactcatattcatCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTACAA---GTGCAAGAAAGGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCAATTACATAGACCTGTCAAGACTAAATCACAGGTGCAAACCCTGTACATCTCATATGGCCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATC---ATCAAACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTtgccctcccctccctccaaatcctctacataatagacgaaatcgacgaaCCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGAATACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACCTCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGGGTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAA
s chrM 3334 4912 + 16571 ATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATCTACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTATtataataAACACCCTCACCACTACAATCTTCCTAGGAACAACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAAGAAATATGTCTGATAAAAGAG--TTACTTTGATAGAGTAAATAATAGGAGCTTAAACCCC---------CTTATTTCTAGGACTATGAGAATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTATCACACCCCATCCTAAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTATACCC-TTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAACCATAACCAATACTACCAatcaatactcatcattaataatcataatGGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAAGCCTTCTCCTCACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACcatcatagccaccatcaCCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTTACCACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTATAGAAATTTAGGTTAAATA-----CAGACCAAGAGCCTTCAAAGCCCTCAGTAAGTTGCAATA---CTTAATTTCTGCAACAGCTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTA--CTAGACCAATGGGACTTAAACCCACAAACACTTAGTTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACTTCTCCCGCCGCCGGGAAAAAAGGCGGGAGAAGCCCCGGCAGGTTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATGAAAATCACCTCGGAGCTGGTAAAAAGAGGCCT--AACCCCTGTCTTTAGATTTACAGTCCAATGCTTCA---CTCAGCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAAtaaTCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAAcaccaccttcttcgaccccgccggaggaggagACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATattaataattttcatgatTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACT-----TTTTCAAAAAGGTATTAGAAAAACCATTTCATAACTTTGTCAAAGTTAAATTATAGG-CTAAATCCTATATATCTTA-ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAA

a score=1535 EG=0 E=0
s chrM 9353 5229 + 16775 ATCAACAACCGCCTCTCCACCATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAatactcctctccattaacctcctaggcctCCTCCCCTACACCTTCACCCCAACTAcccaactATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTTATCTCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCCCTAACGGCACTCATCCTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTcttcgtcctcctcctAAGCCTCTACTTACAAGAAAATATTTAATGGCACACCAAGCACACTCCTACCACATAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGGCCTAATCATATGGTTCCACTACAGCTCGACCACCCTACTGACAATAGGCCTCCTCTCTATACTTCTAGTCATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCCACCACACCCCAACTGTCCAAAAGGGCCTACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTTCCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAAACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTACATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGGTTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGTAGACATCATCTGACTcttcctctacatatccatataCTGATGAGGATCTTGCTCTTCTAGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTATCAACCCAGAGAAGAGCAATGAACACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAAACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAATCGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACACCCTATAATAACCCTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGAACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAACTAAGACAGCTGGTTTCGACCCAGCAAATTATAGACCCACCTATAACTTTCTTATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCATAATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGAAAACCAAACCCCATCATTCGCCCTTGTACCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATCATCCTACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAACCCTAACCCTCTGAACAGGCATAGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCAttcatcatcctagccttCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCacccaccccaacctacctgcctCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACACTcatcctcaaaccagaaCTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACactactcaccctccttacccctattATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATCACCAAAACCATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCattccttctcattggatgatgacaaggacGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCcacccaaaccaaacacccaccct---ccccctccTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTaaacacctcatacatcaatacCTGAGCCCTCTCACTTACACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTATCCTAGCCCTAGAACTC
s chrM 8638 5211 + 16571 ATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAGCCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAAccacccaactatctaTAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGGTGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCACCTGTCCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTACCACTCCAGCCTAGCCCCTACCCCCCAACTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGTAGATGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTTAGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGACAAC-ATTCAAAAAAGAGTAATAAAC---TTCGCCTTAATTTTAATAATCAACACCCTCCTAGCCTTACtactaataattattaCATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAGTTATGTCATCCCTCTTATTaatcatcatCCTAGCCCTAAGTCTGGCCTATGAGTGACTACAAAAAGGATTAGACTGAGCCGAAT---TGGTATATAGTTTAAACAAAACGAATGATTTCGACTCATTAAATTAT---GATAATCATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTACTACCACTGACATGACTTTCCAAAAAGCACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGcatcatccccctactattttTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCCAACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGCGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAAtctccctacaaatctccttaATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGACTCACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGagaaaacACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAACAGAGGCTTACGACCCCTTATTTACCGAG--------AAAGCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCccaaaaatttTGGTGCAACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCT---AACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATACCCCCATTATGTAAAATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAACAACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATATTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACCCAAACATTAATCAGTTCTTCAAATATCTACTCATTTTCCTAATTACCATACTAATCTTAGTTACCGCTAACAACCTATTCCAACTGTTCATCGGCTGAGAGGGCGTAGGAATTATATCCTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAGTCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCTTCTAAACGCTAATCCAAGCCTCACCCCACTACTAGGCCTcctcctagcagcagcagGCAAATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAACTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGTAGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGCTACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCTTCCCCACCCTTACTAACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTtccaaacaacaatccccCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTC

a score=524 EG=4.2e-237 E=6.6e-242
s chrM 14904 1124 + 16775 ATTCGAAAATCCCACCCCCTACTAAAAATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATTAGCAGTCTGCCTCATGACCCAAATCCTCACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAGCCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTtcctaatccccttcctCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAacaaaatactcaa
s chrM 14756 1124 + 16571 ATACGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCATACACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATcttacccttcaTTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTcttccttctctccttaatGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCTaatcctaatacCAACTATCTCCCTAATTGAAAACAAAATACTCAA

a score=260 EG=2e-111 E=3.2e-116
s chrM 1243 1033 + 16775 CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAA-AGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAACCC-AGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAGCTAAGATTAAAATGCAACCAAGCTGTCATAAGCCTAAGATCCACCTAAACCCaacccaaaTCCATCTTAGCCTCAACGATTAATTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCCATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGG-GAGAAATGGGCTACATTTTCTAACATAGAACA-AACGAAAAAGGATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTTCA--CAAGCCATCAACATCAATAAATATATACTTCCCCTCCCGGCTAAAGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACTACCAAG
s chrM  595 1011 + 16571 CCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAAA---TCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCTA-GCCACACCCCCACGGGAAA-CAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAGA-AGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATC--------TGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACA--GCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTT----GCTCAGCCTATATACCGCCATCTTCAGCAAACC-CTGATGAAGGCTACAAAGTAAGCGCAA-GTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTGAGAGTAGA------GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAaagtgcacTTGGACGAACCAG

a score=251 EG=3.9e-107 E=6.2e-112
s chrM 3112 772 + 16775 TATTCCTCAATCTGTTAAGCCAACCCAGGAGCGCCCACAGG--ATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCTTACAACCTTACACAGCCCCACTGGGTCCACCCACACATAAACCCCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAaaaaaaaTCCTCCAAACCCACAGACCACAACTCTTCACTAAGACCAACTCCTCAAAGTACCAACAGTAACCAGACCCAATATAATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAAGGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATCTA-TGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGC
s chrM 2409 754 + 16571 TATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAACCTTAC-CCCGCCTGTTTACCAAAAACATCACCTCTAGC--ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACAC---ATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCTAAACTACCAAA------CCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAacctccgagcagt-aCATGCTAAGACTTCACCAGTCAAAGCGAACTACTATAC------TCAATTGATCCAATA-ACTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTACTTCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCCTACTTCACAAAGC

a score=95 EG=7.1e-33 E=1.2e-37
s chrM 2432 295 + 16775 AGTATAGGCGATAGAAAAGACTACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAAC-AACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTT
s chrM 1742 281 + 16571 AGTATAGGCGATAGAAATTGAAACCT-GGCGCAATAGAT----ATAGTACCGCAAGGGAAAGATGAAA----AATTATAACCA--AGCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAACCAGA-CGAGCTACCTAAGAACAGCTAAAA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTT

# Query sequences=1 normal letters=16571

TEST lastal -r1 -e40 -u3 -fTAB /tmp/last-test hg19-M.fa
#
# a=7 b=1 A=7 B=1 e=40 d=13 x=39 y=9 z=39 D=1e+06 E=1.13155e+07
# R=01 u=3 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1480	chrM	4097	4890	+	16775	chrM	3334	4912	+	16571	920,0:2,29,2:0,37,9:0,65,0:3,69,1:0,982,0:3,86,5:0,39,3:0,13,0:1,74,2:0,74,0:30,81,2:0,35,3:0,17,0:8,450,0:3,1085,0:3,67,5:0,57,1:0,19,1:0,152,0:3,505	EG=0	E=0
969	chrM	9353	3719	+	16775	chrM	8638	3701	+	16571	1406,1:0,21,3:0,340,3:0,47,3:0,1758,8:0,129	EG=0	E=0
478	chrM	14904	1070	+	16775	chrM	14756	1070	+	16571	1070	EG=3.4e-215	E=5.2e-220
397	chrM	13197	1385	+	16775	chrM	12461	1388	+	16571	510,0:3,875	EG=1.2e-176	E=1.9e-181
250	chrM	1243	1033	+	16775	chrM	595	1011	+	16571	56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,58,1:0,91,8:0,135,2:0,92,4:0,33,1:0,27,1:0,45,0:1,32,0:1,61,6:0,55,0:2,101	EG=1.2e-106	E=1.9e-111
160	chrM	3629	255	+	16775	chrM	2908	255	+	16571	146,1:0,53,0:1,55	EG=8.1e-64	E=1.3e-68
122	chrM	3112	338	+	16775	chrM	2409	334	+	16571	41,0:2,38,1:0,32,2:0,37,3:0,184	EG=1e-45	E=1.6e-50
95	chrM	2432	295	+	16775	chrM	1742	281	+	16571	26,1:0,12,4:0,25,4:0,11,2:0,57,0:1,42,1:0,24,3:0,83	EG=7.1e-33	E=1.2e-37
# Query sequences=1 normal letters=16571

#
# a=29 b=2 A=28 B=1 e=120.247 d=63 x=120 y=47 z=120 D=1e+06 E=2.80852e+07
# R=01 u=2 s=2 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.72795 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.211508 K=3.11872
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   4  -3  -2  -5   2  -3  -4   1   2  -4  -3   1   0   1
# C  -3   4  -7  -2   2   2  -3  -2  -4   2   1  -3   1   1
# G  -4  -8   7  -9  -6   3   3  -6   3  -9   1   1  -7   1
# T  -5  -2  -7   4  -3  -3   2   2  -6   2   1   0   1  -4
# M   2   2  -4  -3   2   0  -3   0   0   0  -1  -1   0   1
# S  -3   2   3  -4   0   2   0  -3   0   0   1  -1  -1   1
# K  -5  -3   2   2  -4   0   2   0  -1   0   1   1  -1  -1
# W   1  -2  -4   1   0  -3   0   1   0   0  -1   1   0  -1
# R   2  -4   3  -6   0   0   0   0   3  -5  -1   1  -1   1
# Y  -4   2  -7   2   0   0   0   0  -5   2   1  -1   1  -1
# B  -4   1   1   1  -1   1   1  -1  -2   1   1   0   0  -1
# D   1  -3   1   0  -1  -1   1   1   1  -1   0   1   0   0
# H   0   1  -5   1   0  -1  -1   0  -1   1   0   0   1   0
# V   1   1   1  -4   1   1  -1  -1   1  -1  -1   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
9468.4	chrM	1234	13651	+	16775	chrM	585	13564	+	16571	9,0:1,56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,58,1:0,98,5:0,14,3:0,114,2:0,95,4:0,30,1:0,34,1:0,38,0:1,33,0:1,60,6:0,57,5:0,34,0:7,60,0:1,9,2:0,33,16:0,21,0:9,25,0:2,36,14:0,21,1:0,16,4:0,26,4:0,11,2:0,56,0:1,43,1:0,24,3:0,93,1:0,41,0:4,11,16:0,38,0:1,40,3:0,30,1:0,16,0:8,38,0:1,24,0:2,37,1:0,11,0:9,23,0:4,25,3:0,13,3:0,41,0:2,37,1:0,33,2:0,37,3:0,212,2:0,8,4:0,70,12:0,16,0:1,15,0:4,21,1:0,148,1:0,53,0:1,67,6:0,19,3:0,21,5:0,15,1:0,44,0:1,29,7:0,20,21:0,930,0:2,29,2:0,20,0:1,11,10:0,70,0:3,63,1:0,673,0:1,26,1:0,263,0:5,29,2:0,79,5:0,32,3:0,21,0:1,68,2:0,80,0:30,81,2:0,35,3:0,17,0:8,450,0:3,1085,0:3,67,5:0,58,1:0,18,1:0,152,0:3,514,0:17,18,0:4,14,2:0,27,0:4,62,0:9,33,0:5,52,8:0,138,3:0,1406,1:0,21,3:0,340,3:0,48,3:0,458,0:6,12,6:0,1281,8:0,129,9:0,51,3:0,23,0:4,29,0:5,515,0:3,900,8:0,17,0:8,171,3:0,84	EG=0	E=0
2501.4	chrM	14904	1273	+	16775	chrM	14756	1268	+	16571	1127,2:0,22,0:1,24,4:0,94	EG=1.9e-216	E=3.1e-221
247.4	chrM	16213	562	+	16775	chrM	14155	588	+	16571	135,0:27,75,0:5,29,5:0,246,2:0,54,0:1,16	EG=2.1e-09	E=3.5e-14
127.3	chrM	14396	89	+	16775	chrM	8953	95	+	16571	35,0:9,13,3:0,38	EG=2.3e+02	E=0.0038
121.1	chrM	7217	72	+	16775	chrM	3316	72	+	16571	72	EG=8.4e+02	E=0.014
# Query sequences=1 normal letters=16571
#
# a=29 b=2 A=28 B=1 e=87.5874 d=63 x=87 y=47 z=87 D=1000 E=2.80852e+10
# R=01 u=2 s=2 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.72795 j=3 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.211508 K=3.11872
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   4  -3  -2  -5   2  -3  -4   1   2  -4  -3   1   0   1
# C  -3   4  -7  -2   2   2  -3  -2  -4   2   1  -3   1   1
# G  -4  -8   7  -9  -6   3   3  -6   3  -9   1   1  -7   1
# T  -5  -2  -7   4  -3  -3   2   2  -6   2   1   0   1  -4
# M   2   2  -4  -3   2   0  -3   0   0   0  -1  -1   0   1
# S  -3   2   3  -4   0   2   0  -3   0   0   1  -1  -1   1
# K  -5  -3   2   2  -4   0   2   0  -1   0   1   1  -1  -1
# W   1  -2  -4   1   0  -3   0   1   0   0  -1   1   0  -1
# R   2  -4   3  -6   0   0   0   0   3  -5  -1   1  -1   1
# Y  -4   2  -7   2   0   0   0   0  -5   2   1  -1   1  -1
# B  -4   1   1   1  -1   1   1  -1  -2   1   1   0   0  -1
# D   1  -3   1   0  -1  -1   1   1   1  -1   0   1   0   0
# H   0   1  -5   1   0  -1  -1   0  -1   1   0   0   1   0
# V   1   1   1  -4   1   1  -1  -1   1  -1  -1   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=99.2 EG=8.7e+04 E=0.0031
s chrM         2330 24 + 16775 ACAAGGTCGCCTTGACTTGCCCCC
s SRR001981.51    1 24 -    36 ACTATTTCGCCTCGACTTACCCCC
q SRR001981.51                 IC0I2D6AIII3II;I@IIIIIII

a score=92.1 EG=3.9e+05 E=0.014
s chrM          6998 26 + 16775 GTAGAAGCTGGGGCCGGCACAGGATG
s SRR001981.100    7 26 +    36 GAAGAAGCCGGGCCAGACACAGGGAG
q SRR001981.100                 (IIIIIII3IIII&II%II*<I(&&&

a score=97.4 EG=1.2e+05 E=0.0045
s chrM          14374 22 + 16775 ACGAACCCCCAGCAATCACCCC
s SRR001981.479    14 22 -    36 ACAAACCCCTAGCGATCACCTC
q SRR001981.479                  F84IIIIIIII&IIDI)IIIII

a score=93.8 EG=2.7e+05 E=0.0096
s chrM          7971 17 + 16775 ACCCAGACGCCTACACA
s SRR001981.641    8 17 -    36 ACCCAGACGCCCACACA
q SRR001981.641                 IIIII:4IEIIIIII/I

a score=89.4 EG=6.8e+05 E=0.024
s chrM          14413 31 + 16775 CCCAGCCATTCTCCCAATCATACGACTAGCC
s SRR001981.641     5 31 -    36 CCGACCCAGACGCCCACACAGACAACTAGCC
q SRR001981.641                  I8?IIIII:4IEIIIIII/IAIIIIIIIIII

a score=88.4 EG=8.5e+05 E=0.03
s chrM          2708 21 + 16775 AGCTGGGTGATAGCTGGTTAC
s SRR001981.832   14 21 +    36 AGGTGAGTGATAGTTGGTTAC
q SRR001981.832                 =IIII@IIIII2III,?IIH8

# Query sequences=1000 normal letters=35941
TEST lastal -e100 /tmp/last-test Q5GS15.fa
#
# a=11 b=2 A=11 B=2 e=100 d=31 x=99 y=31 z=99 D=1e+06 E=2.01411e+09
# R=01 u=2 s=1 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.305935 K=0.102404
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=376 EG=1.4e-40 E=1.8e-47
s Q2LCP8               23 416 + 491 LIVLSISIKKDVQRVHIIIQSLKLtlivimiviGIEESIYVKLNGHLIKTELIKLFEYLLLGVSYMIIKMFEEGVTEGKKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILA-LNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNLVKIIIIDK
s sp|Q5GS15|NUON_WOLTR 16 405 + 465 LVLLLLGIVFNRRTINLLALGCTVITLIILI-LSAKDSGFFPFNSLLKLDLYIRSAQGLILIAGILvllllnls-----kydyeyefsililfTLFGMITLVSANNLISFYLSFELMSIPLYVLASFNKDSVYSCEAGVKYFTLSALSSCIMLYGMSllygytglvnfselssfleNHQMTYGIVFGLVLILIGLCFKLAIAPFHMWAPDVYQGAPTIVTAFFSTVPKAALVTFLIRFFMGEELVGVEKYFQPVLLYISALSVLISAFGALRQRNLKRLLAYSSIGHIGFILASLS-IFTRMGTDSSLIYLVIYII---TNIGLFSYFIQIDDDDC--SVANLSGIGKKRPVLAFHLSILLFSMAGIPPLAGFFAKLFIFKSLVNSGFIGMSLIFIVASVISCYYYLSIIKAMYFDK

# Query sequences=1 normal letters=465

TEST lastal -F15 -pBLOSUM62 -e100 /tmp/last-test galGal3-M-32.fa
#
# a=11 b=2 A=11 B=2 F=15 e=100 d=29 x=99 y=31 z=99 D=1e+06 E=8.74201e+08
# R=01 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.333888 K=0.115325
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=150 EG=1.5e-11 E=2.5e-16
s Q2LCP8  110 321 +   491 LILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNL
s chrM   5258 870 + 16775 LICTVSLIMGTSITISSNH*ILA*TGLEINTLAIIPLISKSHHPRAIEATIKYFLTQSTASALILFSSITNA*STGQ*DITQL-----------NHPTSCLILTIAIAIKLGLVPFHF*FPEVLQGSSLITALLLSTLIKLPPITLLLLTSQSL----Nttllt---llaISSTLIGG*MG-LNQTQTRKILAFSSISHLG*IIIII--SYNPQLTI--LTFILYTIMTSTVFLSLAQ--IKVLKLSTL--LIS*TKTPILN----ATVILTLLSLAGLPPLTGFMPK*LIIQELTKQEITPiatiitilsllslfFYLRL

# Query sequences=2 normal letters=17803

TEST lastal -pAT77 -e100 -s0 /tmp/last-test at-rich.fa
#
# a=15 b=2 A=15 B=2 e=100 d=44 x=99 y=29 z=99 D=1e+06 E=1.60098e+07
# R=02 u=2 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=2.9408 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=59940
# lambda=0.336172 K=0.189772
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   2  -3  -2  -3   1  -2  -3   0   1  -3  -3   0   0   1
# C  -3   5  -3  -2   1   3  -2  -2  -3   1   1  -3   0   1
# G  -2  -3   5  -3  -2   3   1  -2   1  -3   1   0  -3   1
# T  -3  -2  -3   2  -3  -2   1   0  -3   1   1   0   0  -3
# M   1   1  -2  -3   1   0  -3   0   1  -1  -1   0   0   1
# S  -2   3   3  -2   0   3   0  -2   0   0   1  -1  -1   1
# K  -3  -2   1   1  -3   0   1   0  -1   1   1   0   0  -1
# W   0  -2  -2   0   0  -2   0   0   0   0   0   0   0   0
# R   1  -3   1  -3   1   0  -1   0   1  -3  -2   0   0   1
# Y  -3   1  -3   1  -1   0   1   0  -3   1   1   0   0  -2
# B  -3   1   1   1  -1   1   1   0  -2   1   1   0   0  -1
# D   0  -3   0   0   0  -1   0   0   0   0   0   0   0   0
# H   0   0  -3   0   0  -1   0   0   0   0   0   0   0   0
# V   1   1   1  -3   1   1  -1   0   1  -2  -1   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=1574 EG=1.8e-217 E=1e-221
s Pf3D7_01_v3 37760 1391 + 59940 CATATATATAAAAAATAACaaaaaaaaaaaaaaaaaaaaaaattttaaatatatcatacaactttcatatatataaaaaataacaaaaaaaaaaaaaaaaaaaaaaaAATATATAAatataaatataaaCAAAAATGGAAAACATTTTACAGAAGAAAAAATATTTAATAAACAAATTttttttttttttttcttttttTGCCACTTAATATATATAAAAATATAATGATAATAAATCAATGCATACCGTAATATAGAAACAAATAACACTTAAAAAAAAATTAAAAAGAACAATATAAATTATGAAATATATATGAAATTATATCTCATAAATATATACATATTATCAAATAAATatatatatataAAAACAAAAAATATCTACATATTATACTAAATAAAACAACATAA------TAAAAATTACAAAGGCA--AAATAAAGAAAAAGTGTATTATTATATTAAAATAAAAAATATACATTATTC-TTTTTTTTATTGTGTTTTATTTTTATTTATTTCATGCATTTTTTATATTTTTATTATTTTTTTTATGTATTGTATCTATTTGTTATATTACGTATAATTATTATATTTTGTTATATGTTGACTATTTTT-TGAATTCATTGTATTAGTAGTATTTCTAATAAAAAATAATTAAAATAATAAAATATATTATGAAATAAATATAAATAA----CATAATATATAATATGATAGGTTTTTTAAGGATGATAATTCTGAATTGAAATAATATACTTATTGGTTTTAATTTAAATTATATAAATATAGATATAAT---ATTTTGAATAATATGTTTCTTAAAATATTTATAATAATAGTAATCataataatcataatcataataatcataattataataatcataaGTTTTATTGTTTTTTTTGATATATATTCCTTTGAAAAACATATGAGGTATTTAAAAAATATACGTTACATTATGTTTTAAAAAAATAATATATTATAATACGTAT-----AAGTATTTTATATAAATTAAAAATTACATTGTTTATTAATTAAAAGAGTTTTAGAAAATaaataaataaataaataaataaaATTATAGAAAAATAAATTATATATAAAAGCGCAATACATATAAAAATATATAGTTATTTATAATGGAGaaaaaaaaaaaaaaaacacacGGTACATTCAAAGAAAAATACTACGTGTACCATACATCCTACCAACATCGAAAAATACCAAATACATCACATCTATTCTTCTAATAATTTTATATACTGTAATTTTTTCTTCATTTTtttttTTCGTCGATAACGTAAAATTAAATAAATAATTATCATAACCAAGACTATAACTACTATTGCAACAACGGACGCTGTTATAGCATTGGAATAAGTAGTAAGACCAGGTGTTGCTGCGTCTA
s Pf3D7_01_v3  7164 1310 - 59940 CAAATAAAATAATAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTTTAATATATCATACAAATTTCATATATATAAAAAATAACAaaaaaaaaaaaaaa----------tatatAAatataaatataaaCAAAAAAGGAAAACATTTTACAGAAGAAAAAATATTTAATAAACAAATTttttttttttttCT----TTTTGCCACTTAATATATATAAAAATATAATG-TAATAAATCAATGCATAC-GTAATATAGAAACAAATAACACTTAAAAAAATA-----AAAAAGCATATATATTATGAAACATATATGAAATTATATCTCATAAATATATACATATTATCAAATAAATATATATA------AAAAAGTAATATTTACATATTATTCTAAAAAAACAATAATaacaacaaTAAAAATTAAAAAGGAAGAAAATAACGAAAAAGTGTATTATTATATTAGAATAAAAAATATTCATTATTCGTTTTTCttttctttttttttttttttttttttCATGTATTttttttGTTTTTATTAGTTCTTTTATGTATTCTATCTATTTGTTATATTACGTGTAATTATTATAATTC-TTATAAGTTAAATATTTTTGTGAATTCATTGTATTAGTAGAATTTATAAAAAAAAT-------AATAATAAAATAAATTATGAAATAAGTATAAATAAATAACATAATATATAATATGATATGTTTTTTAAGAA-GATAATTGTGAATTGAAATAATATAATTATTGGTTTTAAATTAAATTATATAAATACAGATGTAATTATATTTTTAATAATATGTTTTTTATAATATTAataataatagtaatcatagtaatcatTAT-ATAATA-------------------TACGTTTTATT---TGTTTTATTATATATTTCACTGAAAAATATCTGAGATATTTAATAAATATAAGTTACATAATGTTTTAAAAGATTAG-ATATAATGATATATATGAGTGAAGTATTTAATATAAATTAAAA-CTACATTATTCAATAAATAAAATATATTTAGAAAATAAATAAGT----------------TTATAGAAAAATAAATAATATATAAAAACTTAATACATATAAAAAT-------TATTAATAATAATGAAAAA-------------TATGGTGAGTTCAAAGAAAAACAATATGTGTTCCAAACATTCTACCAACACCAA------CCTAACAAAACATATTTATTCTTCTAATAATTTTATATATTGGAGTTTTTTCTTCAATTTCATTTTTCTGCGATAACGTAAAATCAAATATATTATAACCATAATTAAAACTATGATTACTATTGCAACGATGGATGCTATTATAGGAGTATAGTAGGAAGTAGTTGCAGCTTCTACTTCGGCTA

a score=1574 EG=1.8e-217 E=1e-221
s Pf3D7_01_v3 51466 1310 + 59940 TAGCCGAAGTAGAAGCTGCAACTACTTCCTACTATACTCCTATAATAGCATCCATCGTTGCAATAGTAATCATAGTTTTAATTATGGTTATAATATATTTGATTTTACGTTATCGCAGAAAAATGAAATTGAAGAAAAAACTCCAATATATAAAATTATTAGAAGAATAAATATGTTTTGTTAGG------TTGGTGTTGGTAGAATGTTTGGAACACATATTGTTTTTCTTTGAACTCACCATA-------------TTTTTCATTATTATTAATA-------ATTTTTATATGTATTAAGTTTTTATATATTATTTATTTTTCTATAA----------------ACTTATTTATTTTCTAAATATATTTTATTTATTGAATAATGTAG-TTTTAATTTATATTAAATACTTCACTCATATATATCATTATAT-CTAATCTTTTAAAACATTATGTAACTTATATTTATTAAATATCTCAGATATTTTTCAGTGAAATATATAATAAAACA---AATAAAACGTA-------------------TATTAT-ATAATGATTACTatgattactattattattaatattatAAAAAACATATTATTAAAAATATAATTACATCTGTATTTATATAATTTAATTTAAAACCAATAATTATATTATTTCAATTCACAATTATC-TTCTTAAAAAACATATCATATTATATATTATGTTATTTATTTATACTTATTTCATAATTTATTTTATTATT-------attTTTTTTATAAATTCTACTAATACAATGAATTCACAAAAATATTTAACTTATAA-GAATTATAATAATTACACGTAATATAACAAATAGATAGAATACATAAAAGAACTAATAAAAACAAAAAAAATACATGAAAAAaaaaaaaaaaaaaaaagaaaagaaaaACGAATAATGAATATTTTTTATTCTAATATAATAATACACTTTTTCGTTATTTTCTTCCTTTTTAATTTTTATTGTTGttattattGTTTTTTTAGAATAATATGTAAATATTACTTTTT------TATATATATTTATTTGATAATATGTATATATTTATGAGATATAATTTCATATATGTTTCATAATATATATGCTTTTT-----TATTTTTTTAAGTGTTATTTGTTTCTATATTAC-GTATGCATTGATTTATTA-CATTATATTTTTATATATATTAAGTGGCAAAA----AGAaaaaaaaaaaaaaTTTGTTTATTAAATATTTTTTCTTCTGTAAAATGTTTTCCTTTTTTGTTTATAtttatatttatatA----------TttttttttttttttGTTATTTTTTATATATATGAAATTTGTATGATATATTAAAATTttttttttttttttttttttttttttttATTATTTTATTTG
s Pf3D7_01_v3 20789 1391 - 59940 TAGACGCAGCAACACCTGGTCTTACTACTTATTCCAATGCTATAACAGCGTCCGTTGTTGCAATAGTAGTTATAGTCTTGGTTATGATAATTATTTATTTAATTTTACGTTATCGACGAAAAaaaaaAATGAAGAAAAAATTACAGTATATAAAATTATTAGAAGAATAGATGTGATGTATTTGGTATTTTTCGATGTTGGTAGGATGTATGGTACACGTAGTATTTTTCTTTGAATGTACCGTgtgttttttttttttttttctCCATTATAAATAACTATATATTTTTATATGTATTGCGCTTTTATATATAATTTATTTTTCTATAATTTTAtttatttatttatttatttatttTCTAAAACTCTTTTAATTAATAAACAATGTAATTTTTAATTTATATAAAATACTT-----ATACGTATTATAATATATTATTTTTTTAAAACATAATGTAACGTATATTTTTTAAATACCTCATATGTTTTTCAAAGGAATATATATCAAAAAAAACAATAAAACTTATGATTATTATAAttatgattattatgattatgattattatgattactattattatAAATATTTTAAGAAACATATTATTCAAAAT---ATTATATCTATATTTATATAATTTAAATTAAAACCAATAAGTATATTATTTCAATTCAGAATTATCATCCTTAAAAAACCTATCATATTATATATTATG----TTATTTATATTTATTTCATAATATATTTTATTATTTTAATTATTTTTTATTAGAAATACTACTAATACAATGAATTCA-AAAAATAGTCAACATATAACAAAATATAATAATTATACGTAATATAACAAATAGATACAATACATAAAAAAAATAATAAAAATATAAAAAATGCATGAAATAAATAAAAATAAAACACAATAAAAAAAA-GAATAATGTATATTTTTTATTTTAATATAATAATACACTTTTTCTTTATTT--TGCCTTTGTAATTTTTA------TTATGTTGTTTTATTTAGTATAATATGTAGATATTTTTTGTTTTtatatatatatatTTATTTGATAATatgtatatatttATGAGATATAATTTCATATATATTTCATAATTTATATTGTTCTTTTTAATTTTTTTTTAAGTGTTATTTGTTTCTATATTACGGTATGCATTGATTTATTATCATTATATTTTTATATATATTAAGTGGCAAAaaaagaaaaaaaaaaaaaaaaTTTGTTTATTAAATATTTTTTCTTCTGTAAAATGTTTTCCATTTTTGTTTATAtttatatttatatATttttttttttttttttttttttttGTTATTTTTTATATATATGAAAGTTGTATGATATATTTAAAAtttttttttttttttttttttttgttattttttatatatatg

a score=1466 EG=1e-201 E=6e-206
s Pf3D7_01_v3 35795 1331 + 59940 AGATATACATAAatacatatatacattaacaaacacatatatatacctaaatacatatatacatACACATATATGTTCATTTTttttt---TTAGAAAAAAACCAAATCATCTGTTGGAAATTTATTCCAAATACTGCAAATACCCCAAAACGATTATGGAATACCAACATTGAAATCCAAAAATAGGTACATACCATATAGAAGTGGTACATATAAAGGCAAAACATATATTTATATGGAAGGAGATAGCAGTGGAGATGAAAAATATGCATTTATGTCTGATACTACTGATGTAACTTCCTCAGAAAGTGAGTATGAAGAATTGGATATTAATGATATATATGTACCGCATGCTCCTAAATATAAAACATTAATTGAAGTAGTACTTGAACC---------TAGTGGTAACAACACAACAGctagtggtaaaaacacaCCTAGTGATACACAAAATGATATACcaactagtgatacacCaccaccCATTACTGATAATGAGTGGAATACATTGAAAGATGAATTTATATCACAATATCTACAAAGTGAACAACCAAAGGATGTACCAAATGATTATAAAAGTGGTGATATTCCATTGAATACACAACCGAATACTTTATATTTTAATAAACCTGAAGAAAAACCTTTTATTACTTCTATTCATGATAGGGATTTATATACTGGAGAACAAATTAGTTATAATATTCATATGAGTACTAATACTATGGATGATCCAAAATATGTATCAAATAATGTATATTCTGGTATAGATTTAATTAATGACGCACTAAATGGTGATTA------TGACATTTACGATGAAATATTGAAACGAAAAGAAAATGAATTATTTGGAACAAATCATGTGAAACAAACAAGTATACATAGTGTTGCCAAACTAACAAATAGTGACCCCATCCACAACCAACTGGAACTATTCCATAAATGGTTAGATAGACATAGAAATATGTGTGAAAAGTGGAAAAATGATAATGAGCGGTTAGCCAAATTAAAAgaagagtgggaaaatgaGACACATAGTGGTAACACTCACCCTAGTGATAGTAACAAAACGTTAAATACTGATGTTTCTATACAGATAGATATGGATCATGAAAAACGAATGAAGGAATTTACTAATATGGATACTATCTTGGATGATTTGAAAACATATAATGAACCTTATTATGATGTGCAAGATGATATttattatgatg------tAAATGATCATGATGCATCAACTGTGGATAGTAA---TAATATGGATGTTCCCAGTAGAGTACAAATTGAAATGGATGTAAATACGAA------------ATTGGTGAAAGAGAAATATCCTATAGCCGATGTATGGGATATATAA
s Pf3D7_01_v3 16233 1341 - 59940 AGAAATatatatatatatatatatatatatatatatTAATATTTCACACAATATATACGTatatatacgtaaatataTATTCTTTTATAGATGAGAACAAAACCAAAACAT--GAAGTAGATATGATACGGATATTACAAATGTCACAAAACAAATATGGTATCCCGACAACCAAATcaccaaacaaataTATCCCATATGCGAGTCAACGATATAAAGGCAAAACATATATATATATGGAGGGTGATAGTGGAGATGAAGATAAATATATTGGAAACATATCTTCATCTGATATTACTTCGTCCGAAAGTGAGTATGAAGAAATGGATATAAATGATATATACCCCTACACGTCACCTAAATATAAAACATTGATCGAAGTGGTACTAGAACCATCCAAAAGTAATGGTAACACACCAAGTAAGGgtgatggtaacacaGTAggtgatG------ATATGGTACCTACCACTAATACAT---------TTACAGATGAGGAATGGAGTGAACTGAAACATGATTTTATATCTAATATGTTACAAAAT---CAACCAAATGATGTaccaaatgatTATAAAAGTGGAGATATTCCATTCAATACACAACCGAATACTTTATATTTTGATAATAATCAAGAAAAACCTTTTATTACATCTATTCATGATAGGGATTTATATACTGGGGAAGAAATTAGTTATAATATTCATATGAGTACTAATAGTATGGATGATCCAAAATATGTATCAAATAATGTATATTCTGGTATCGATTTAATTAATGACACATTAAGTGGTAATCAACATATTGATATATATGATGAAGTGCTAAAAAGAAAAGAAAATGAATTATTTGGAACTAATCATCCGAAAAATACATCAAACAATAGTGTAGCTAAATTAACAAATAGTGATCCAATTATgaaccaatTAGATTTGTTACATAAATGGTTAGATAGACATAGAGATATGTGCGATAAATGGAATACCAAGGAGGATATTTTGAATAAATTGAATGAACAATGGAATAAAGATAATAATGTTGGtggtgATATACCAAATGA---TAACAAAATGTTGAATACGGATGTTTCTATACAAATAGATATAGATGAAAATAAAGGAAAGAAGGATTTAAGTAATATGGATACTATCTTGGATGATATGGAA------GATGATATATATTATGATGTAAATGATaatgatgatgataatgatCAACCATCTGTGTATGATATATCTATGGATCATAATAAAGTAGATgtagatgtaCCTAAGAAAGTACATATTGAAATGAAAATCCTTAATAATACATCTAATGGATCGTTGGAACAACAATTTCCTATATCGGATGTATGGAATAtataa

a score=1466 EG=1e-201 E=6e-206
s Pf3D7_01_v3 42366 1341 + 59940 ttatataTTCCATACATCCGATATAGGAAATTGTTGTTCCAACGATCCATTAGATGTATTATTAAGGATTTTCATTTCAATATGTACTTTCTTAGGTACATCtacatctacTTTATTATGATCCATAGATATATCATACACAGATGGTTGATCATTatcatcatcattatcattTACATCATAATATATATCATC------TTCCATATCATCCAAGATAGTATCCATATTACTTAAATCCTTCTTTCCTTTATTTTCATCTATATCTATTTGTATAGAAACATCCGTATTCAACATTTTGTTA---TCATTTGGTATATCACcaccaACATTATTATCTTTATTCCATTGTTCATTCAATTTATTCAAAATATCCTCCTTGGTATTCCATTTATCGCACATATCTCTATGTCTATCTAACCATTTATGTAACAAATCTAATTGGTTCATAattggatcACTATTTGTTAATTTAGCTACACTATTGTTTGATGTATTTTTCGGATGATTAGTTCCAAATAATTCATTTTCTTTTCTTTTTAGCACTTCATCATATATATCAATATGTTGATTACCACTTAATGTGTCATTAATTAAATCGATACCAGAATATACATTATTTGATACATATTTTGGATCATCCATACTATTAGTACTCATATGAATATTATAACTAATTTCTTCCCCAGTATATAAATCCCTATCATGAATAGATGTAATAAAAGGTTTTTCTTGATTATTATCAAAATATAAAGTATTCGGTTGTGTATTGAATGGAATATCTCCACTTTTATAATCATTTGGTACatcatttggtTG---ATTTTGTAACATATTAGATATAAAATCATGTTTCAGTTCACTCCATTCCTCATCTGTAA---------ATGTATTAGTGGTAGGTACCATAT------CATCACCTACTGTGTTACcatcacCCTTACTTGGtgtgttaccattacTTTTGGATGGTTCTAGTACCACTTCGATCAATGTTTTATATTTAGGTGACGTGTAGGGGTATATATCATTTATATCCATTTCTTCATACTCACTTTCGGACGAAGTAATATCAGATGAAGATATGTTTCCAATATATTTATCTTCATCTCCACTATCACCCTCCATATATATATATGTTTTGCCTTTATATCGTTGACTCGCATATGGGATATATTTGTTTGGTGATTTGGTTGTCGGGATACCAtatttgttttgtgACATTTGTAATATCCGTATCATATCTACTTC--ATGTTTTGGTTTTGTTCTCATCTATAAAAGAATATATATTTACGtatatatacgtatatatTGTGTGAAATATTAATAtatatatatatatatatatatatatatatTTCT
s Pf3D7_01_v3 22814 1331 - 59940 TTATATATCCCATACATCGGCTATAGGATATTTCTCTTTCACCAAT------------TTCGTATTTACATCCATTTCAATTTGTACTCTACTGGGAACATCCATATTA---TTACTATCCACAGTTGATGCATCATGATCATTTA------CATCATAATAAATATCATCTTGCacatcataataaGGTTCATTATATGTTTTCAAATCATCCAAGATAGTATCCATATTAGTAAATTCCTTCATTCGTTTTTCATGATCCATATCTATCTGTATAGAAACATCAGTATTTAACGTTTTGTTACTATCACTAGGGTGAGTGTTACCACTATGTGTCTCATTTTCCCACTCTTCTTTTAATTTGGCTAACCGCTCATTAtcatttttccacttttcACACATATTTCTATGTCTATCTAACCATTTATGGAATAGTTCCAGTTGGTTGTGGATGGGGTCACTATTTGTTAGTTTGGCAACACTATGTATACTTGTTTGTTTCACATGATTTGTTCCAAATAATTCATTTTCTTTTCGTTTCAATATTTCATCGTAAATGTCA------TAATCACCATTTAGTGCGTCATTAATTAAATCTATACCAGAATATACATTATTTGATACATATTTTGGATCATCCATAGTATTAGTACTCATATGAATATTATAACTAATTTGTTCTCCAGTATATAAATCCCTATCATGAATAGAAGTAATAAAAGGTTTTTCTTCAGGTTTATTAAAATATAAAGTATTCGGTTGTGTATTCAATGGAATATCACCACTTTTATAATCATTTGGTACATCCTTTGGTTGTTCACTTTGTAGATATTGTGATATAAATTCATCTTTCAATGTATTCCACTCATTATCAGTAATGGGTggtggtgTATCACTAGTTGGTATATCATTTTgtgtatcactaggtgTGTTTTTACCACTAGCTGTtgtgttgttaccacta---------gGTTCAAGTACTACTTCAATTAATGTTTTATATTTAGGAGCATGCGGTACATATATATCATTAATATCCAATTCTTCATACTCACTTTCTGAGGAAGTTACATCAGTAGTATCAGACATAAATGCATATTTTTCATCTCCACTGCTATCTCCTTCCATATAAATATATGTTTTGCCTTTATATGTACCACTTCTATATGGTATGTACCTATTTTTGGATTTCAATGTTGGTATTCCATAATCGTTTTGGGGTATTTGCAGTATTTGGAATAAATTTCCAACAGATGATTTGGTTTTTTTCTAA---AAaaaaaAATGAACATATATGTGTATGTATATATGTATTTAGGTATAtatatgtgTTtgTTAatgtatatatgtatttatgtatatct

a score=718 EG=1.7e-92 E=9.9e-97
s Pf3D7_01_v3 39406 600 + 59940 CTTCAATCCCTGCTTTAACAcctgcttcaataccCTTTTGCAGAGCCGTTTGTGTAACATAATTTGTCCACACC----GCATAACCT---AAACCGCTGACCAGACTCC--AACCTGGGGCAATACCACCTCCCAATACACCTGCACATCGCAAACATCCTTTTTCCACTTTGTCCTCCAAGGATTTTTCGCAAATGCAGGTAGGAATGGAGTCACTTTGTATATCAGTTTGTAATGTGGCAAATTTGTCCATTAATTCTTTTTCTAATTTGTCTTTTAAAATAATTTTTTGAATTTCTTTATCGCATTGTTCTTTACATTTTTGGCGTGTAGTTTTCATCCTTTCGTCATATTCGTGAAATCGTTGTGTTGTACGATCCTCAAATTGTTGCATCACCCTTTTCATTTCTGCATCATTATCATTATTGGCCGGTGAATATAATTCACATTCGCATAATAACCTGGTGGTTTGTGTATGATTTGGTGTATGTGGtgtggtgCTTTTATGGTTCCTTTGATTATATATCTATACAAAATGGTCACATATATATGTATATTATAATTAGTTCTTTTTTATTTTATATATATATGTTATAAATATGTATGTTT
s Pf3D7_01_v3  8858 591 - 59940 CTTTAAGACCTGctgctgcAcctgcTTGTTTAGCTAATTCCATAGCCGCTGCAATTTCTGTAGTTTTCCACACACTTAGCGCAGCTTCAGAAATTCCTGCTAATACTCCTGAAGAGGGTGCAACAATCTTTCCCAAATTTTGCGTACATTTCAAACAATTTTTTTCCACTTTATCTGCTAATGATTTTTCGCAAATACATGTTGGAATGGCATCACTATGTATATCAGTTTGTAATGAAGAAAACTTTTCTGTTAATTCTTTTTCAATTTTATCTTTTAAAATAATTTTTTGGATTTCCTTATCACATTTATCTTTACATTTTTGTCGTTTTTCTTTCAAATTTTCATCGTATTCATGAAACCTTTGTGTTGTACGATCATGAAATTGTTGCATCACAGATTTCATTTCAGGATCGTTGTCATAATTG---GGTGTATATAATTCGCAttcgcaTAATAATCTGGTAGTTTGTATATGACGTGATGTAATTGATG------------GTTTTTTGTGGGTATTTACCTATAAAAAATGGTGACATATATATGTA-ATGTTTATTTGTAGTTTATGATTT--TATATATTTGTAATTAATATGTATATTT

a score=718 EG=1.7e-92 E=9.9e-97
s Pf3D7_01_v3 50491 591 + 59940 AAATATACATATTAATTACAAATATATA--AAATCATAAACTACAAATAAACAT-TACATATATATGTCACCATTTTTTATAGGTAAATACCCACAAAAAAC------------CATCAATTACATCACGTCATATACAAACTACCAGATTATTATGCGAAtgcgaaTTATATACACC---CAATTATGACAACGATCCTGAAATGAAATCTGTGATGCAACAATTTCATGATCGTACAACACAAAGGTTTCATGAATACGATGAAAATTTGAAAGAAAAACGACAAAAATGTAAAGATAAATGTGATAAGGAAATCCAAAAAATTATTTTAAAAGATAAAATTGAAAAAGAATTAACAGAAAAGTTTTCTTCATTACAAACTGATATACATAGTGATGCCATTCCAACATGTATTTGCGAAAAATCATTAGCAGATAAAGTGGAAAAAAATTGTTTGAAATGTACGCAAAATTTGGGAAAGATTGTTGCACCCTCTTCAGGAGTATTAGCAGGAATTTCTGAAGCTGCGCTAAGTGTGTGGAAAACTACAGAAATTGCAGCGGCTATGGAATTAGCTAAACAAGCAGGTGCAgcagcagGTCTTAAag
s Pf3D7_01_v3 19934 600 - 59940 AAACATACATATTTATAAcatatatatataaAATAAAAAAGAACTAATTATAATATACATATATATGTGACCATTTTGTATAGATATATAATCAAAGGAACCATAAAAGCACCAcaccacaTACACCAAATCATACACAAACCACCAGGTTATTATGCGAATGTGAATTATATTCACCGGCCAATAATGATAATGATGCAGAAATGAAAAGGGTGATGCAACAATTTGAGGATCGTACAACACAACGATTTCACGAATATGACGAAAGGATGAAAACTACACGCCAAAAATGTAAAGAACAATGCGATAAAGAAATTCAAAAAATTATTTTAAAAGACAAATTAGAAAAAGAATTAATGGACAAATTTGCCACATTACAAACTGATATACAAAGTGACTCCATTCCTACCTGCATTTGCGAAAAATCCTTGGAGGACAAAGTGGAAAAAGGATGTTTGCGATGTGCAGGTGTATTGGGAGGTGGTATTGCCCCAGGTT--GGAGTCTGGTCAGCGGTTT---AGGTTATGC----GGTGTGGACAAATTATGTTACACAAACGGCTCTGCAAAAGGGTATTGAAGCAggtgttaaagcaggGATTGAAG

a score=697 EG=2e-89 E=1.2e-93
s Pf3D7_01_v3 49648 1189 + 59940 TAGATACATTAGAGAGAAACGTATAACATACAATAAATTTTAGAACAAAAGAAAAAAAAAAGAACATAAATACTTTGTTAAAATATATTTGGTTTAATTATTATTATTAAAAAATATATATTGTTTTTTTTACGTTTAATAACAAATATTATGATATGCAATGATTTTTATATGACAGCAATATAGTTAACATACATGTTGCAATATCAATTTCACTAATAGGTTTTTCCAAATTGTAAATTATATGTGGTATACACGTTCAACAGCCATTAATTTACACATATGTATATATTTTACAACAAAAAAATAGA-AGTTCTTACTAAATCGTAACGTATTTTTGAAAAATAT-TAAAAAAACCTTTTTAATTGTAATTTATCGTATGATATAAAATTAAATTTTATTAAAAATTAAAATTCAAAATTATAAAAAATGTA-ATATATTTTGATATATTATATTTTTAATttttttttttttttttttttttttttttttttAGTGTTTTATATAAAAAGGCAAA-TATGGTTCCATTATAAaaaaaaaaaaaTTATATATTTATATAATGGGAAAATAATTGTATATTATGTTATTAAATGTATTATAATAATGTTTTATGTTAAACATATTTGATGTATTTATAACACAA---AATAAAATATTTTATGTGA-TTTTTTTAGTTATAGTTTTTATCATAAAATAATATACGTATCACAATAAAAAATGAAAATCCATTATACTAATATATTATTGTTTCCTCTAAAATTAAATATATTGGTAACATTATGTGATAAATAAATAAAATATTCATAAATATAATTAT---TATATCTATATGACTTATATATATAGTTTAAATATACATATTAATTACAAATATATAAAATCATAAACTACAAATAAACATTACATATATATGT-------CACCATTTTTTATAGGTAAATACCCACAAAAAACCATCAATTACATCACGTCATATACAAACTACCA------GATTATTATGCGAAtgcgaaTTATATACACCCAATTATGACAACGATCCTGAAATGAAATCTGTGATGCAACAATTTCATGATCGTACAACACAAAGGTTTCATGAATACGATGAAAATTTGAAAGAAAAACGACAAAAATGTAAAGATAAATGTGATAAGGAAATCCAAAAAATTATTTTAAAAGATAAAATTGAAAAAGAATTAACAGAAAA
s Pf3D7_01_v3  4248 1176 - 59940 TAGATAAATTAGAGAGAAAGTTATAACATGCAACAATTTTTAGAAGAACAAaaaaaaataATAACAAAA---CCTAAAAGAAATACAATTACTATTAGT-------TTGAAAAATATTTATTTCTTTTATTATGATACAAAATGTTTATTCTATAATTG------TTTTATAAAATTGAAATAATGCCAATTT-TATGTTGTAATATATATT---CATAtatgttgtaataAGTTCCTATATACTTATTGTATACC--TTTAAAAATTAATTCTGTACACATTTTTATTTTATTTACATCGAAAAACTATTTATTTGTAACTATAGTTTTATTTATTATATACATATATATTAAAATAAAATTAATATTATAATTTATCGTATGATATAAAATTAGGTTTTGTTAGAAATTAAGATGGGAATTTATAAAAAATATGGAAATATTTTACTATATTATTTATTTTTTTCTTCCTATTTATTATTTTtttatttttttttTCTGTTCTGAATAAATGGGAAAAATATGGTTGCAGTAAAAAAA---------TATATTTTTATATAATGGGAAAATAATTGTGTATTATAGCAGAAGCC----TATAATAATATTTCAGATTAAAAATATGTAATTCTTATATAGAACAATAAAATATATTATTATATATGAATCTTTTTAGTTATAATTTTAATCATAAAATAATAGTAGTATCACAATAAATA-TGAAACTGCACTACACTAAATTATTATTATTTTTCTTTACATTAAATATATTGTTAACATCATATCATGTATGAATGAAATATTTATAAATatatatatatataGTATTTTATAATTTATG-GTAAATAAACAATATACATATTCATTACAAATTTATAAAATAGTAAACAACAATTAATTATAACATAcatatatatatatatTACATTCTTTATAGGCACATAATAAAAATAAACCATCCATCACACCACATCATACACGAAGTACTACGTCACGATTGTTAAGCGAATATGACACAGAATCGTCAATTTATGATAGTGATGATGAAATCGATTCAGTGAAGGAAATTTTCGAACGACAAGCCTCACAAAGATTACGAGAATATGACGAAAGGTTGCAAGAAAAACGACAAAAACGCAAAGAACAACGTGACAAAAATATACAAAAAATTATTCATAAAGATAAAATGGAGAAAAACTTAGCAGAAAA

a score=697 EG=2e-89 E=1.2e-93
s Pf3D7_01_v3 54516 1176 + 59940 TTTTCTGCTAAGTTTTTCTCCATTTTATCTTTATGAATAATTTTTTGTATATTTTTGTCACGTTGTTCTTTGCGTTTTTGTCGTTTTTCTTGCAACCTTTCGTCATATTCTCGTAATCTTTGTGAGGCTTGTCGTTCGAAAATTTCCTTCACTGAATCGATTTCATCATCACTATCATAAATTGACGATTCTGTGTCATATTCGCTTAACAATCGTGACGTAGTACTTCGTGTATGATGTGGTGTGATGGATGGTTTATTTTTATTATGTGCCTATAAAGAATGTAATATatatatatatgtatgTTATAATTAATTGTTGTTTACTATTTTATAAATTTGTAATGAATATGTATATTGTTTATTTAC-CATAAATTATAAAATACTATatatatatatatTTATAAATATTTCATTCATACATGATATGATGTTAACAATATATTTAATGTAAAGAAAAATAATAATAATTTAGTGTAGTGCAGTTTCA-TATTTATTGTGATACTACTATTATTTTATGATTAAAATTATAACTAAAAAGATTCATATATAATAATATATTTTATTGTTCTATATAAGAATTACATATTTTTAATCTGAAATATTATTATA----GGCTTCTGCTATAATACACAATTATTTTCCCATTATATAAAAATATA---------TTTTTTTACTGCAACCATATTTTTCCCATTTATTCAGAACAGAAAAaaaaaaTaaaaaaaTAATAAATAGGAAGAAAAAAATAAATAATATAGTAAAATATTTCCATATTTTTTATAAATTCCCATCTTAATTTCTAACAAAACCTAATTTTATATCATACGATAAATTATAATATTAATTTTATTTTAATATATATGTATATAATAAATAAAACTATAGTTACAAATAAATAGTTTTTCGATGTAAATAAAATAAAAATGTGTACAGAATTAATTTTTAAA--GGTATACAATAAGTATATAGGAACTTATTACAACATATATG---AATATAtattacaacata-AAATTGGCATTATTTCAATTTTATAAAA------CAATTATAGAATAAACATTTTGTATCATAATAAAAGAAATAAATATTTTTCAA-------ACTAATAGTAATTGTATTTCTTTTAGG---TTTTGTTATTATttttttttGTTCTTCTAAAAATTGTTGCATGTTATAACTTTCTCTCTAATTTATCTA
s Pf3D7_01_v3  9103 1189 - 59940 TTTTCTGTTAATTCTTTTTCAATTTTATCTTTTAAAATAATTTTTTGGATTTCCTTATCACATTTATCTTTACATTTTTGTCGTTTTTCTTTCAAATTTTCATCGTATTCATGAAACCTTTGTGTTGTACGATCATGAAATTGTTGCATCACAGATTTCATTTCAGGATCGTTGTCATAATTGGGTGTATATAATTCGCAttcgcaTAATAATC------TGGTAGTTTGTATATGACGTGATGTAATTGATGGTTTTTTGTGGGTATTTACCTATAAAAAATGGTG-------ACATATATATGTAATGTTTATTTGTAGTTTATGATTTTATATATTTGTAATTAATATGTATATTTAAACTATATATATAAGTCATATAGATATA---ATAATTATATTTATGAATATTTTATTTATTTATCACATAATGTTACCAATATATTTAATTTTAGAGGAAACAATAATATATTAGTATAATGGATTTTCATTTTTTATTGTGATACGTATATTATTTTATGATAAAAACTATAACTAAAAAAA-TCACATAAAATATTTTATT---TTGTGTTATAAATACATCAAATATGTTTAACATAAAACATTATTATAATACATTTAATAACATAATATACAATTATTTTCCCATTATATAAATATATAATTtttttttttttATAATGGAACCATA-TTTGCCTTTTTATATAAAACACTAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTAAAAATATAATATATCAAAATATAT-TACATTTTTTATAATTTTGAATTTTAATTTTTAATAAAATTTAATTTTATATCATACGATAAATTACAATTAAAAAGGTTTTTTTA-ATATTTTTCAAAAATACGTTACGATTTAGTAAGAACT-TCTATTTTTTTGTTGTAAAATATATACATATGTGTAAATTAATGGCTGTTGAACGTGTATACCACATATAATTTACAATTTGGAAAAACCTATTAGTGAAATTGATATTGCAACATGTATGTTAACTATATTGCTGTCATATAAAAATCATTGCATATCATAATATTTGTTATTAAACGTAAAAAAAACAATATATATTTTTTAATAATAATAATTAAACCAAATATATTTTAACAAAGTATTTATGTTCTTTTTTTTTTCTTTTGTTCTAAAATTTATTGTATGTTATACGTTTCTCTCTAATGTATCTA

a score=616 EG=1.3e-77 E=7.8e-82
s Pf3D7_01_v3 40126 868 + 59940 TTTAATATATATGTGACATGGAATTACCAATATATTTAATGGAAGCTCAAACAATAATATATTAATATAATGGATTTTCATTTTTTATTGTGATACGTATATTATTTTTTGATAAATATTATAACTAAAAAAATCACATAAAATACTTTATTTTATATTATAAATAAATTAAATAAAAATGTTTAACATAAAATATGATTATAATTTATTTAAT---ATAATTAACAATTATTTTCCCATTATGTAAATATA-----TTttttttttTATAGTGGATCCACATTTGCCATTTTATTTATTAC----AAAaaaaaaaaaaCAAAAACGTAAAAAAATTAATATTAAAATAATTTATCAAAACATTCTGCATTTTTTATAATTTTTTTTAAtttttaatttttaatGAAATTTAATTTTAAATCAACACAATAAATTATTATGGTTATTTTTGGTTTAttttttttttatttttttCATTTTTCTCAATAATATCTAACGATATAGTAATAATACAACATATTTCTGTGTTGTAAATTATTTACAAATGTGCAAAACCAACGTTTTGGAAATTGTGTATGACATATATATAATACCAATTTATAATATATATATATGAAATACTTatgaaatagttatTAAAACATATAATTTCGTAACATTGTTGTTATAAAAA--------CAATTAACAACAAATATTTTATAACATAATAAATGATATA-AAATCTTCTTCAAATAATAATATATACATATATATTAATAAATAAATTTTCATATATTATGTTATTTGTTTTGTTCTAAAATTTATTGTATGTTATAAAATTCCCTCTAATTTATCTATGTTGTTACTAAGATTAATATTATTtttttttttttATAAAAATATTAC
s Pf3D7_01_v3  9497 843 - 59940 TTTTATTTATTTATCACATAATGTTACCAATATATTTAATTTTAGAGGAAACAATAATATATTAGTATAATGGATTTTCATTTTTTATTGTGATACGTATATTATTTTATGATAAAAACTATAACTAAAAAAATCACATAAAATATTTTATTTTGTGTTATAAATACATCAAAT----ATGTTTAACATAAAACATTATTATAATACATTTAATAACATAATATACAATTATTTTCCCATTATATAAATATATAATTtttttttttttATAATGGAACCATATTTGCCTTTTTATATAAAACACTAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTAAAAATATAATATATCAAAATATATTACATTTTTTATAA----TTTTGAATTTTAATTTTTAATAAAATTTAATTTTATATC-ATACGATAAATTACAATTAAAA-------------------AGGTTTTTTTAATATTTTTCAAAAATACGTTACGATTTAGTAAGAAC---TTCTATTTTTTTGTTGTAAAATATATACATATGTGTAAATTAATGGCTGTTGAACGTGTATACCACATATA---ATTTACAATTTGGAAAA----------ACCTATTAGTGAAATTGATATTGCAACATGTATGTTAACTATATTGCTGTCATATAAAAATCATTGCATATCATAATATTTGTTATTAAACGTAAAAAAAACAATATATATTTTTTAATAATAATAATTAAACCAAATATATT-TTAACAAAGTATTTATGTTCTTTTTTTTTTCTTTTGTTCTAAAATTTATTGTATGTTATACGTTTCTCTCTAATGTATCTAAAATTATATAAatataaata-tatatatatatTTTTAAAATTATATTAC

a score=616 EG=1.3e-77 E=7.8e-82
s Pf3D7_01_v3 49600 843 + 59940 GTAATATAATTTTAAAAATATATatata-tatttatatttatatAATTTTAGATACATTAGAGAGAAACGTATAACATACAATAAATTTTAGAACAAAAGAAAAAAAAAAGAACATAAATACTTTGTTAA-AATATATTTGGTTTAATTATTATTATTAAAAAATATATATTGTTTTTTTTACGTTTAATAACAAATATTATGATATGCAATGATTTTTATATGACAGCAATATAGTTAACATACATGTTGCAATATCAATTTCACTAATAGGT----------TTTTCCAAATTGTAAAT---TATATGTGGTATACACGTTCAACAGCCATTAATTTACACATATGTATATATTTTACAACAAAAAAATAGAA---GTTCTTACTAAATCGTAACGTATTTTTGAAAAATATTAAAAAAACCT-------------------TTTTAATTGTAATTTATCGTAT-GATATAAAATTAAATTTTATTAAAAATTAAAATTCAAAA----TTATAAAAAATGTAATATATTTTGATATATTATATTTTTAATttttttttttttttttttttttttttttttttAGTGTTTTATATAAAAAGGCAAATATGGTTCCATTATAAaaaaaaaaaaaTTATATATTTATATAATGGGAAAATAATTGTATATTATGTTATTAAATGTATTATAATAATGTTTTATGTTAAACAT----ATTTGATGTATTTATAACACAAAATAAAATATTTTATGTGATTTTTTTAGTTATAGTTTTTATCATAAAATAATATACGTATCACAATAAAAAATGAAAATCCATTATACTAATATATTATTGTTTCCTCTAAAATTAAATATATTGGTAACATTATGTGATAAATAAATAAAA
s Pf3D7_01_v3 18946 868 - 59940 GTAATATTTTTATAAaaaaaaaaaaaTAATATTAATCTTAGTAACAACATAGATAAATTAGAGGGAATTTTATAACATACAATAAATTTTAGAACAAAACAAATAACATAATATATGAAAATTTATTTATTAATATATATGTATATATTATTATTTGAAGAAGATTT-TATATCATTTATTATGTTATAAAATATTTGTTGTTAATTG--------TTTTTATAACAACAATGTTACGAAATTATATGTTTTAATAACTATTTCAtaagtatttcataTATATATATTATAAATTGGTATTATATATATGTCATACACAATTTCCAAAACGTTGGTTTTGCACATTTGTAAATAATTTACAACACAGAAATATGTTGTATTATTACTATATCGTTAGATATTATTGAGAAAAATGAAAAAAATAAAaaaaaaataaaccaaaaataACCATAATAATTTATTGTGTTGATTTAAAATTAAATTTCATTAAAAattaaaaattaaaaaAAATTATAAAAAATGCAGAATGTTTTGATAAATTATTTTAATATTAATTTTTTTACGTTTTTGTtttttttttttt----GTAATAAATAAAATGGCAAATGTGGATCCACTATAAaaaaaaaaa-----TATATTTACATAATGGGAAAATAATTGTTAATTAT---ATTAAATAAATTATAATCATATTTTATGTTAAACATTTTTATTTAATTTATTTATAATATAAAATAAAGTATTTTATGTGATTTTTTTAGTTATAATATTTATCAAAAAATAATATACGTATCACAATAAAAAATGAAAATCCATTATATTAATATATTATTGTTTGAGCTTCCATTAAATATATTGGTAATTCCATGTCACATATATATTAAA

a score=466 EG=1e-55 E=6.2e-60
s Pf3D7_01_v3 40036 909 + 59940 TATatatatatAAAAATTATATATACGATATCGTAATATATTTATATATAAAtatataTATTATATTATAATATGATTATATTAATCCTCTTTAATATATATGTGACATGGAATTACCAATATATTTAATGGAAGCTCAAACAATAATATATTAATATAATGGATTTTCATTTTT-----TATTGTGATACGTATATTATTTTTTGATAAATATTATAACTAAAAAAAT--CACATAAAATACTTTATTTTATATTATAAATAAATTAAATAAAAATGTTTAACATAAAATATGATTATAATTTATTTAATATAATTAACAATTATTTTCCCATTATGTAAATATATTttttttttTATAGTGGATCCACATTTGCCATTTTATTTATTACAAAaaaaaaaaaaCAAAAACGTAAAAA---AATTAATATTAAAATAATTTATCAAAACATTCTGCATTTTTTATAATTTTTTTTAAtttttaatttttaatGAAATTTAATTTTAAATCAACACAATAAATTATTATGGTTATTTTTGGTTTAttttttttttatttttttCATTTTTCTCAATAATATCTAACGATATAGTAATAATACAAC--ATATTTCTGTGTTGTAAATTATTTACAAATGTGCAAAACCAACGTTTTGGAAATTGTGTATGACATATATATAATACCAATTTATAATATATATATATGAAATACTTatgaaatagttatTAAAACATATAATTTCGTAACATTGTTGTTATAAAAACAATTAACAACAAATATTTTATAACATAATAAATGATATAAAATCTTCTTCAAATAATA-ATATATACATATATATTAA--TAAATAAATTTTCATATATTATGTTATTTG-----TTTTGTTCTAAAATTTATTGTATGTTATAAAATTCCCTCTAATTTATCTA
s Pf3D7_01_v3    22 847 - 59940 TATAAAGATTTAATAATAATATATATGGTATCGTAATAAATATATATGTTATTATATTTAT-------------GAATATTTTATTC-----------ATTTATCACATAATGTTACCAATATATTTAATGGAAGAGCAAATAAAAATATATTAATATAATGGAATTTCATTTTTATTGTTGTTATTATATTTATAATAATTTATGATAAAAATTATTACCAAATAATTGATATATATAATACCTTATTTTATGTTATAAATAAATTAAATA----TGTTTAATCTAGAATATTATTATATTTTATTTAATATAACTAACAATTATTTTCCCATTATACCAATATATATTTTTTTTC----TGGAACCATTTTTGCATTTTTATTTAAAACACTAAaaaaaaaaaaaaaaaaTTAAAATTGAAATAATAAAAAAATAATATAACAAAATATATCACATTTTTTATAATTTAT----AATTTTAATTTTTAATAAAATTTCATTTTATGTC-ATACGATAAATTACCATTAAAAT---------------------ATTGTTTTATATTTTACAATAACACGTTAACATATAGTAACAATAGAACTTATATTTGTTTGTTGTAAAATATATGCATATGTGTAAAGTAATAGTTCTTGAACGTGTACATAAAATATA---ATTTACAATTGGGAATA-ACATATAAG---------TGAAATTGATATTACAACATGTATGTTCACAATATGGCTATTGTATAAGT-----------ATCATTGTATATCATAATATGTGGTATTAAACGTAAAACAAGCAATATATATTTTAATAGTAATGAAACCAAATATATTTTAATAATTTTATTTTTATATAATTTTTGGTTCTAAAATTTATTCTATGATATAGGCTTCTCTCTAATGTATCTA

a score=466 EG=1e-55 E=6.2e-60
s Pf3D7_01_v3 59071 847 + 59940 TAGATACATTAGAGAGAAGCCTATATCATAGAATAAATTTTAGAACCAAAAATTATATAAAAATAAAATTATTAAAATATATTTGGTTTCATTACTATTAAAATATATATTGCTTGTTTTACGTTTAATACCACATATTATGATATACAATGAT-----------ACTTATACAATAGCCATATTGTGAACATACATGTTGTAATATCAATTTCA---------CTTATATGT-TATTCCCAATTGTAAAT---TATATTTTATGTACACGTTCAAGAACTATTACTTTACACATATGCATATATTTTACAACAAACAAATATAAGTTCTATTGTTACTATATGTTAACGTGTTATTGTAAAATATAAAACAAT---------------------ATTTTAATGGTAATTTATCGTAT-GACATAAAATGAAATTTTATTAAAAATTAAAATT----ATAAATTATAAAAAATGTGATATATTTTGTTATATTATTTTTTTATTATTTCAATTTTAATtttttttttttttttttAGTGTTTTAAATAAAAATGCAAAAATGGTTCCA----GAAAAAAAATATATATTGGTATAATGGGAAAATAATTGTTAGTTATATTAAATAAAATATAATAATATTCTAGATTAAACA----TATTTAATTTATTTATAACATAAAATAAGGTATTATATATATCAATTATTTGGTAATAATTTTTATCATAAATTATTATAAATATAATAACAACAATAAAAATGAAATTCCATTATATTAATATATTTTTATTTGCTCTTCCATTAAATATATTGGTAACATTATGTGATAAAT-----------GAATAAAATATTC-------------ATAAATATAATAACATATATATTTATTACGATACCATATATATTATTATTAAATCTTTATA
s Pf3D7_01_v3 18995 909 - 59940 TAGATAAATTAGAGGGAATTTTATAACATACAATAAATTTTAGAACAAAA-----CAAATAACATAATATATGAAAATTTATTTA--TTAATATATATGTATATAT-TATTATTTGAAGAAGATTTTATATCATTTATTATGTTATAAAATATTTGTTGTTAATTGTTTTTATAACAACAATGTTACGAAATTATATGTTTTAATAACTATTTCAtaagtatttcataTATATATATTATAAATTGGTATTATATATATGTCATACACAATTTCCAAAACGTTGGTTTTGCACATTTGTAAATAATTTACAACACAGAAATAT--GTTGTATTATTACTATATCGTTAGATATTATTGAGAAAAATGAAAAAAATAAAaaaaaaataaaccaaaaataACCATAATAATTTATTGTGTTGATTTAAAATTAAATTTCATTAAAAattaaaaattaaaaaAAATTATAAAAAATGCAGAATGTTTTGATAAATTATTTTAATATTAATT---TTTTTACGTTTTTGTttttttttttttGTAATAAATAAAATGGCAAATGTGGATCCACTATAAaaaaaaaaaTATATTTACATAATGGGAAAATAATTGTTAATTATATTAAATAAATTATAATCATATTTTATGTTAAACATTTTTATTTAATTTATTTATAATATAAAATAAAGTATTTTATGTG--ATTTTTTTAGTTATAATATTTATCAAAAAATAATATACGTATCACAATA-----AAAAATGAAAATCCATTATATTAATATATTATTGTTTGAGCTTCCATTAAATATATTGGTAATTCCATGTCACATATATATTAAAGAGGATTAATATAATCATATTATAATATAATATATATATTTATatATAAATATATTACGATATCGTATATATAATTTTTATatatataTA

a score=412 EG=8e-48 E=4.8e-52
s Pf3D7_01_v3 54901 791 + 59940 TATatatatatatatTTATAAATATTTCATTCATACATGATATGATGTTAACAATATATTTAATGTAAAGAAAAATAATAATAATTTAGTGTAGTGCAGTTTCATATTTATTG------TGATACTACTATTATTTTATGATTAAAATTATAACTAAAAAGATTCATATATAATAATATATTTTATTGTTCTATATAAGAATTACATATTTTTAATCTGAAATATTATTATAGGCT-TCTGCTATAATACACAATTATTTTCCCATTATATAAAAATATATTTTTTTACTGCAACCATATTTTTCCCATTTATTCAGAACAGAAAAaaaaaaTaaaaaaaTAATAAATAGGAAGAAAAAAATAAATAATATAGTAAAATATTTCCATATTTTTTATAAATTCCCATCTTAATTTCTAACAAAACCTAATTTTATATCATACGATAAATTATAATATTAATTTTATTTTAATATATATGTATATAATAAATAAAACTATAGTTACA----AATAAATAGTTTTTCGATGTAAATAAAATAAAAATGTGTACAGAATTAATTTTTAAAGGTATACAATAAGTATA--TAGGAACTTATTACAACATATATG---AATATAtattacaacata-AAATTGGCATTATTTCAATTTTATAAA-ACAATTATAGAATA-AACATTTTGTAT----CATAATAAAAGAAATAAATATTTT--TCAAACTAATAGTAATTGTATTTCTTTTAGGTTTTGTTATTATttttttttGTTCTTCTAAAAATTGTTGCATGTTATAACTTTCTCTCTAATTTATCTA
s Pf3D7_01_v3    64 805 - 59940 TATATGTTATTATATTTATGAATATTTTATTCATTTATCACATAATGTTACCAATATATTTAATGGAAGAGCAAATAAAAATATATTAATATAATGGAATTTCATTTTTATTGTTGTTATTATATTTATAATAATTTATGATAAAAATTATTACCAAATA-ATTGATATAT-ATAATACCTTATTTTATGTTATAAATAAATTAAATATGTTTAATCTAGAATATTATTATATTTTATTTAATATAACTAACAATTATTTTCCCATTATACCAATATATATTTTTTTTCTGGAACCAT-TTTTGCATTTTTATTTAAAACACTAAaaaaaaa-aaaaaaaaaTTAAAATTGAAATAATAAAAAAATAATATAACAAAATATAT-CACATTTTTTATAATTTATAATTTTAATTTTTAATAAAATTTCATTTTATGTCATACGATAAATTACCATTAAAATATTGTTT---TATATTTTACAATAACACGTTAACATATAGTAACAATAGAACTTATATTTGTTTGTTGTAAAATATATGCATATGTGTAAAGTAATAGTTCTTGAACGTGTACATAAAATATAATTTACAATTGGGAATAACATATAAGTGAAATTGATATTACAACATGTATGTTCACAATATGGCTATTGTATAAGTATCATTGTATATCATAATATGTGGTATTAAACGTAAAACAAGCAATATATATTTTAATAGTAATGAAACCAAATATATTTTAATAATTTTATTTTTATATAATTTTTGG---TTCTAAAATTTATTCTATGATATAGGCTTCTCTCTAATGTATCTA

a score=412 EG=8e-48 E=4.8e-52
s Pf3D7_01_v3 59071 805 + 59940 TAGATACATTAGAGAGAAGCCTATATCATAGAATAAATTTTAGAA---CCAAAAATTATATAAAAATAAAATTATTAAAATATATTTGGTTTCATTACTATTAAAATATATATTGCTTGTTTTACGTTTAATACCACATATTATGATATACAATGATACTTATACAATAGCCATATTGTGAACATACATGTTGTAATATCAATTTCACTTATATGTTATTCCCAATTGTAAATTATATTTTATGTACACGTTCAAGAACTATTACTTTACACATATGCATATATTTTACAACAAACAAATATAAGTTCTATTGTTACTATATGTTAACGTGTTATTGTAAAATATA---AAACAATATTTTAATGGTAATTTATCGTATGACATAAAATGAAATTTTATTAAAAATTAAAATTATAAATTATAAAAAATGTG-ATATATTTTGTTATATTATTTTTTTATTATTTCAATTTTAATtttttttt-tttttttttAGTGTTTTAAATAAAAATGCAAAA-ATGGTTCCAGAAAAAAAATATATATTGGTATAATGGGAAAATAATTGTTAGTTATATTAAATAAAATATAATAATATTCTAGATTAAACATATTTAATTTATTTATAACATAAAATAAGGTATTAT-ATATATCAAT-TATTTGGTAATAATTTTTATCATAAATTATTATAAATATAATAACAACAATAAAAATGAAATTCCATTATATTAATATATTTTTATTTGCTCTTCCATTAAATATATTGGTAACATTATGTGATAAATGAATAAAATATTCATAAATATAATAACATATA
s Pf3D7_01_v3  4248 791 - 59940 TAGATAAATTAGAGAGAAAGTTATAACATGCAACAATTTTTAGAAGAACAAaaaaaaataATAACAAAACCTAAAAGAAATACAATTACTATTAGTTTGA--AAAATATTTATTTCTTTTATTATG----ATACAAAATGTT-TATTCTATAATTGT-TTTATAAAATTGAAATAATGCCAATTT-TATGTTGTAATATATATT---CATAtatgttgtaataAGTTCCTA--TATACTTATTGTATACCTTTAAAAATTAATTCTGTACACATTTTTATTTTATTTACATCGAAAAACTATTTATT----TGTAACTATAGTTTTATTTATTATATACATATATATTAAAATAAAATTAATATTATAATTTATCGTATGATATAAAATTAGGTTTTGTTAGAAATTAAGATGGGAATTTATAAAAAATATGGAAATATTTTACTATATTATTTATTTTTTTCTTCCTATTTATTATTTTtttatttttttttTCTGTTCTGAATAAATGGGAAAAATATGGTTGCAGTAAAAAAATATATTTTTATATAATGGGAAAATAATTGTGTATTATAGCAGA-AGCCTATAATAATATTTCAGATTAAAAATATGTAATTCTTATATAGAACAATAAAATATATTATTATATATGAATCTTTTTAGTTATAATTTTAATCATAAAATAATAGTAGTATCA------CAATAAATATGAAACTGCACTACACTAAATTATTATTATTTTTCTTTACATTAAATATATTGTTAACATCATATCATGTATGAATGAAATATTTATAAATatatatatatata

a score=314 EG=1.6e-33 E=9.7e-38
s Pf3D7_01_v3 29876 633 + 59940 ATGTTGGTGCTTGTGCACCATACCGACGTCTACATCTATGTAGTCATAATTTGGAAAGTATACAAACAAATAATTATAATAGTGGTAATGCTAAACATAATTTATTGGTAGATGTGTGTATGGCAGCCAAATACGAAGGGGACTCAATAAAAAACTATTATCCAAAGTATCAAAGAACATATCCTGATACTAATTCTCAATTATGTACCGTGTTGGCACGAAGTTTTGCTGATATAGGAGATATCGTACGCGGTAAAGATCTGTATCTCGGTAATCCACAAGAAAGTACACAAAGAATAATATTAGAAAATAATTTGAAAGATATTTTCGCGAAAATACATAGTGACGTGATGTCAACGAGCGGGAGTAATGGGAGGGCGCTACAAAAAcgctacaaaGATACTGATAATTATTATGAATTGAGAGAAGATTGGTGGGCACTTAATAGAGACCAAGTATGGAAAGCTATCACATGCAATGCTGGGGGTGGTAATAGATATTTTCGACAAACATG------TGGTTCAG-----GAGAATGGGCTAAAGACAAATGCCGGTGTAAGGAC--GACAAGGTCCCCACATATTTTGACTATGTGCCACAGTATCTTCGCTGGTTCGAGGAATGGGCCGAAGATTTTTGTA
s Pf3D7_01_v3 13785 600 - 59940 ATGCTGGAGCATGTGCACCATTCCGAAGACAAAATATGTGTGATAAAAATTTAGAATATTTG------ATCAATAAAAACACAGAAAATACT---CATGACTTATTGGGAAATGTACTAGTTACAGCAAAATATGAAGGTGAATCAATTGTTAATAATCATCCAGA----TAAAGATATTAAG--GGTAATAAATCAAGTATATGTACTTCTCTTGCACGAAGTTTTGCAGATATAGGAGATATTATTAGAGGAAAGGATATGTTTAAACGTAATAAACATGATAATA---------------TAGAAAAGGGTCTAAGAGAAGTTTTTAAGAAAATATACGAGGGTTTAAAG---AATAACGGGg----cgagagagCATTACAAAGAAGTCAAAAA-----TGGAAATTACATAAAATTAAGGGAAGATTGGTGGACAGCGAACAGAGATCAAGTATGGAAAGCTATAACGTGTGAAGC---GCCAGAAAATGCATATATTATAAAAAGAAGAATTGATGGTGGTGATATTGAGAATTTGATTTTGACACAT-CCAAAGTGTGGACATGATACTGATCCCCCTGTTGTTGATTATATCCCTCAACGCTTAAGATGGATGAGCGAATGGTCTGAATATTTCTGTA

a score=314 EG=1.6e-33 E=9.7e-38
s Pf3D7_01_v3 45555 600 + 59940 TACAGAAATATTCAGACCATTCGCTCATCCATCTTAAGCGTTGAGGGATATAATCAACAACAGGGGGATCAGTATCATGTCCACACTTTGG-ATGTGTCAAAATCAAATTCTCAATATCACCACCATCAATTCTTCTTTTTATAATATATGCATTTTCTGGC---GCTTCACACGTTATAGCTTTCCATACTTGATCTCTGTTCGCTGTCCACCAATCTTCCCTTAATTTTATGTAATTTCCA-----TTTTTGACTTCTTTGTAATGCTctctcg----cccCGTTATT---CTTTAAACCCTCGTATATTTTCTTAAAAACTTCTCTTAGACCCTTTTCTA---------------TATTATCATGTTTATTACGTTTAAACATATCCTTTCCTCTAATAATATCTCCTATATCTGCAAAACTTCGTGCAAGAGAAGTACATATACTTGATTTATTACC--CTTAATATCTTTA----TCTGGATGATTATTAACAATTGATTCACCTTCATATTTTGCTGTAACTAGTACATTTCCCAATAAGTCATG---AGTATTTTCTGTGTTTTTATTGAT------CAAATATTCTAAATTTTTATCACACATATTTTGTCTTCGGAATGGTGCACATGCTCCAGCAT
s Pf3D7_01_v3 29431 633 - 59940 TACAAAAATCTTCGGCCCATTCCTCGAACCAGCGAAGATACTGTGGCACATAGTCAAAATATGTGGGGACCTTGTC--GTCCTTACACCGGCATTTGTCTTTAGCCCATTCTC-----CTGAACCA------CATGTTTGTCGAAAATATCTATTACCACCCCCAGCATTGCATGTGATAGCTTTCCATACTTGGTCTCTATTAAGTGCCCACCAATCTTCTCTCAATTCATAATAATTATCAGTATCTTTGTAGCGTTtttgtagcgCCCTCCCATTACTCCCGCTCGTTGACATCACGTCACTATGTATTTTCGCGAAAATATCTTTCAAATTATTTTCTAATATTATTCTTTGTGTACTTTCTTGTGGATTACCGAGATACAGATCTTTACCGCGTACGATATCTCCTATATCAGCAAAACTTCGTGCCAACACGGTACATAATTGAGAATTAGTATCAGGATATGTTCTTTGATACTTTGGATAATAGTTTTTTATTGAGTCCCCTTCGTATTTGGCTGCCATACACACATCTACCAATAAATTATGTTTAGCATTACCACTATTATAATTATTTGTTTGTATACTTTCCAAATTATGACTACATAGATGTAGACGTCGGTATGGTGCACAAGCACCAACAT

a score=297 EG=4.9e-31 E=2.9e-35
s Pf3D7_01_v3 37619 184 + 59940 TATATTAAaaaaaaaaaaaaaaaaatatatatatatataaaAATTATTATTATAATTTTTTTTTCCTAAATGTGTTTACATATAAAATAAT--AaaaaaaaaaaaaaaaaaaaaGAAAAATTTGAAATATATCATATAAATTTCATATATATAAAAAATAACaaaaaaaaaaaaaaaaaaaaaaat
s Pf3D7_01_v3  7086 186 - 59940 TAAATTAACAGTAGAAaaaaaaaaatatatatatatatataAATTATTATTATAATTTTTTTTTCCTAAATGTGTATACAAATAAAATAATAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTTTAATATATCATACAAATTTCATATATATAAAAAATAACAaaaaaaaaaaaaaatatatAAat

a score=297 EG=4.9e-31 E=2.9e-35
s Pf3D7_01_v3 52668 186 + 59940 atttatatATttttttttttttttGTTATTTTTTATATATATGAAATTTGTATGATATATTAAAATTttttttttttttttttttttttttttttATTATTTTATTTGTATACACATTTAGGAAAAAAAAATTATAATAATAATTTAtatatatatatatatttttttttttCTACTGTTAATTTA
s Pf3D7_01_v3 22137 184 - 59940 AtttttttttttttttttttttttgttattttttatatatatgaaatttatatgatatatttcaaatttttctttttttttttttttttttTT--ATTATTTTATATGTAAACACATTTAGGAAAAAAAAATTATAATAATAATTTTtatatatatatatatttttttttttttttttttAATATA

a score=243 EG=3.8e-23 E=2.3e-27
s Pf3D7_01_v3 50892 748 + 59940 GAAAAATCATTAGCAGATAAAGTGGAAAAAAATTGTTTGAAATGTACGCAAAATTTGGGAAAG--ATTGTTGCACCCTCTTCAGGAGTATTAGCAGGAATTTCTGAAGCTGCGCTAAGTGTGTGGAAAACTACAGAAATTGCAGCGGCTATGGAATTAGCTAAACAAGCAGGTGC------------AgcagcagGTCTTAAagcaggaCATTTGgcaggTACTAATGCTGTTATTGAACAATTACGCACATTGGGTATATACTTTGTAGGTGATAAACTATTGGAAACAATTATTGATGTAACAAATTATATGAATGTGTCTTTCATTTATGATAAAGTTTATTCTCATTATACCACGTCATGTACACCTAGTTTAGTTAATGATCAGCT------TGTCGGTACTTTTAACACTAGTGATCCTTTTTGCAATTTGGTTCATTCAAATCTTCAAGGTAGTTTTTATAGAAGTTCAGCACAAACTATTATATATGAAAAGGTAGAAGAAGCTGTTGCAGGAGCT---------GAACAAGCTGCTACTACCAAAACTGCGGTCATGACTCCTATATATACAACAGAATTTACAGCAAAAAACATAGCCGAAG---------TAGAAGCTGCAACTACTTCCTACTATACTCCTATAATAGCATCCATCGTTGCAATAGTAATCATAGTTTTAATTATGGTTATAATATATTTGATTTTACGTTATCGCAGAAAAATGAAATTGAAGAAAAAACTCCAATATATAAAATTATTAGAAGAATAAATAT
s Pf3D7_01_v3  5404 763 - 59940 GAGAAAAACTTAGCAGAAAAAATAGAAAAAGGTTGTCTTAGGTGTG-----GATGTGGGCTAGGAAGTGTTGCa--------ggaagtattgG-ATTATTTGGTGCGGTTGCTATAAATATATGGAAACCTGCGGCACTTGATGCCGCTATTACAGCAGCTCTAAATGCAAATGCTGTTAAGATTGCGGCtgccgctAATgctgcGGGTGAGGTTATAGGTAAGGCATTAGTTATTGCAGAATTACAAAAAATGGGTATATCAACTCTAAAAGGTCAGACATTGAAATCCTTTTTTAGAACAATATCTTATAAAAATGTCTCGAGCATTACTAAAGCTGTTTATGGACAACATTATGAGATATGTGTATATGATCCTTCAAGGAACCTGTTATCCTCTTTCGGTGACGTTAACCGTCATATTGGTATTTGCAATTCGGTGTGGAAACAAATTTCAGCTGTATCACAAAGAGG------ACAATATATTTCACATGAAGAAGTTATAAAAAGAACTGTAGAAACTATGATGTCAGAAGCCGAAGTATCAGCTAAAGCCGCTGCTAAGACTgctgAAgctgctAATAAATT---AGCTATTGAAGAAGCACAAGAGCAAGTTATGGAAGCTACAATTTACAATTGGTACACCAcaattggTTACACCATCCTTGCCATATTAATTATAGTTTTAATTATGATAATAATTTATTTGATTTTACGTTATCGACGAAAAaaaaaAATGAAGAAAAAAGCCCAATACACAAAATTATTAAATGAATAAATAT

a score=243 EG=3.8e-23 E=2.3e-27
s Pf3D7_01_v3 53773 763 + 59940 ATATTTATTCATTTAATAATTTTGTGTATTGGGCTTTTTTCTTCATTTTtttttTTCGTCGATAACGTAAAATCAAATAAATTATTATCATAATTAAAACTATAATTAATATGGCAAGGATGGTGTAACCAATTGTGGTGTaccaattgTAAATTGTAGCTTCCATAACTTGCTCTTGTGCTTCTTCAATAGCTAATTTATTAGCAGCTTCAGCAGTCTTagcagcGGCTT------TAGCTGATACTTCGGCTTCTGACATCATAGTTTCTACAGTTCTTTTTATAACTTCTTCATGTGAAATATATTGTCCTCTTTGTGATACAGCTGAAATTTGTTTCCACACCGAATTGCAAATACCAATATGACGGTTAACGTCACCGAAAGAGGATAACAGGTTCCTTGAAGGATCATATACACATATCTCATAATGTTGTCCATAAACAGCTTTAGTAATGCTCGAGACATTTTTATAAGATATTGTTCTAAAAAAGGATTTCAATGTCTGACCTTTTAGAGTTGATATACCCATTTTTTGTAATTCTGCAATAACTAATGCCTTACCTATAACCTCACCCGCAGCATTAGCGGCagcCGCAATCTTAACAGCATTTGCATTTAGAGCTGCTgTAatagcggcaTCAAGTGCCGCAGGTTTCCATATATTTATAGCAACCGCACCAAATAAT-CCAATACTTCC--------TGcaacacttcctAGCCCACATC-----CACACCTAAGACAACCTTTTTCTATTTTTTCTGCTAAGTTTTTCTC
s Pf3D7_01_v3  8300 748 - 59940 ATATTTATTCTTCTAATAATTTTATATATTGGAGTTTTTTCTTCAATTTCATTTTTCTGCGATAACGTAAAATCAAATATATTATAACCATAATTAAAACTATGATTACTATTGCAACGATGG---ATGCTATTATAGGAGTATAGTAGGAAGTAGTTGCAGCTTCTACTTCGGCTATGTTTTTTGCTGTA---AATTCTGTTGTATATATAGGAGTCATGACCGCAGTTTTGGTAGTAGCAGCTTGTTCAGCTCCTGCAACagctTcTTCTACCTTTTCATATATAATAGTTTGTGCTGAA---------CTTCTATAAAAACTACCTTGAAGATTTGAATGAACCAAATTGCAAAAAGGATCACTAGTGTTAAAAGTACCGACA------AGCTGATCATTAACTAAACTAGGTGTACATGACGTGGTATAATGAGAATAAACTTTATCATAAATGAAAGACACATTCATATAATTTGTTACATCAATAATTGTTTCCAATAGTTTATCACCTACAAAGTATATACCCAATGTGCGTAATTGTTCAATAACAGCATTAGTACCTGCCAAATGTCCTGCTTTAAGACCTGctgct------------gcAcctgcTTGTTTAGCTAATTCCATAGCCGCTGCAATTTCTGTAGTTTTCCACACACTTAGCGCAGCTTCAGAAATTCCTGCTAATACTCCTGAAGAGGGTGCAACAAT--CTTTCCCAAATTTTGCGTACATTTCAAACAATTTTTTTCCACTTTATCTGCTAATGATTTTTC

# Query sequences=1 normal letters=59940

TEST lastal -Q1 -a15 -b3 -e80 /tmp/last-test nano.fq
#
# a=15 b=3 A=15 B=3 e=80 d=66 x=79 y=44 z=79 D=1e+06 E=2.60518e+07
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.219611 K=0.335483
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=80 EG=2.8e+05 E=1.8
s chrM                  5305 35 + 16775 CAGCAACCATTGAATCTTAGCCTGAACAGGCTTAG
s channel_100_read_89_2 4684 34 +  6457 CAGCAACCAATGGATCTTACGC-GACCAGGATGAG
q channel_100_read_89_2                 +)*+*'()')(''*()((()*+-()&'('''*''(

# Query sequences=2 normal letters=13060

@S1_1
TAAATCCATAAGTATTACTCGGCAGAAGAGGTTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATACGCTGTTGTAGTTGCCAACGGGGAGTCATGGTTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCAAATCCACAAAAATGGCCAGATAACATGCAGCGTAAAAAGATCACCCAACCAGCAACATGAATGGCGTCGGCATGGGATGATTACGTTTTTTAGCATCAGGTAGGGAATATCATTAAAATAATAATCCCATAGAATATCACCAGAAATACAAAAATAAGCACTCCCAGTGCAAAATAATCCAGAAACATATTTCCCTCAGAGATATAAAAAAGAACAATTAACGCATATTATGAAATCCCATGATGCAGTGCAATTTCCTTATTTATATAACGGCATATTGTTTTTTATATACTTTCTGAAGTGTGCTGCGTGGCTTTTCAACGGTCGAGGTTTATCATATTGAAATAATGGAACTATTGACCAAGCTAATGAATAACTCCAGTAAAACATCCACAGTACAGTAAAGCGTATTAAACCTTCAATTATCTACCGTTTATTGCTGATTGGCCTCGGAACGCCAATGGTGATTTACGGCTGGTTTGCCCGCTCACCATCGAAACGCGAGAGTAAACTCCTGGCAAAACACGCCCCAGAAACGCATTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGT
+
vnY~KZymvU~{)bPl~msb~~~yMl~iD\~~{BktN~Gs~~T~YfV~~~P[w~~~T~?]~~A]~^~HY~~Wn~Vw'oc~PbEu_~cbeV~JGxX~/7~D~U`R3ex3~?r~igtyG~=q@vk~Tr~:vrJAvoZy~~eo~~Z?V~jakp~^M:FQw~U3YOE~lO\X~q~l_~_d{~u~eJCaOQa~~e~3y~~M~~T~dFbs~~4lfxg~~\C~pj_j~0Y_~7o~~~_D~q~[J~~uIEY~faU~}yYb{apcdF~E~W~O~~m.NMaE>~tY~~FqlP~~t[L~SA~~J~~.LS~^OPT9~~]s~gLTf~*=;M{>U_~b@jPTl~a~~zogk~=2JR;u~<f~SF~jVc~G~}Lfgp~S'k~WO~Y]~^~kc~@{C~~IHxV~ZeZq~=~~]XAp~L~cnQ~~P~aAV\RN~W:B~IdYPTD\[~~NI_u~`Zds~~f~~gI~~OuVF;sDAgfOeI_^Y~;~~U>n~Yi~~c_Z`~^k~~v~P~~d~:~Xsx~S}~ppI>O~Ur~{\L~~~]b~P@\~~~Vjo;lS|Crs~~XPICyV:tR~~c~~k~~b~~~S~RhT[~~Vw~To~~~~W~s/Vf~oQy~Gaf^~}vS~gC~~~Cdv';h<~@?LZ~~nRhew~~v`Px~}~~[n}o~fuPkjWse_L~~ad~~I~OZ~~=br~m~ZBw~h~X~~|QWvL~2`~~YQ~b~zgJ1F~~do[~~L?q?~~IH~~K~`~R`rb]1~j7.~~RY>RF.X~~~V)~~~~~~
@S1_2
TTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCGTGTCGGTTTGGGGTACGATTTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTCAGCACCGTAGTGCCTCGTCATACGCCTCAGCCTTGATTTGCCGGATTTGCCTGGAAAACCAGCCTACACGCTTAAACCGGGACAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCGCATTCGCACTTCTGGATACCTCCAGCA
+
X0CXP4b:3COT6P9<GIHR98:D2S9*6'7@C+;:8G]N/'FJR5=OSjF@6UnK%GN6G<I/M;Mm8I-LJI>TU,G&)3AG=P:>>>`<*FQP7D/AD44D5Z>>k;?=S6;4vaYK<S>LM4Ug*e@EBc.JTR*30ACa~QAtM=(?D?B9F<6wHyE/:~O0R3H:G06g:Ja=><0YMF2J9LIY)Ew<E/PK9?oWWDSCE0V_P<3D9;ED=E?N.M@zT6K.fI<4ECJ/iX(NE59RU3<EK-JQR-P~IA.bB?0&\P0W%CGE*7L8>?Q-AA7HZ~HDRLBHBF~MLAG-kFH>2=GXMOgE7DD0W3%'7BIK?~@BA>EP;E2A8/<nVHX@C?\>\]?0M?42?cuW<DIo-2O<8AI/@WZ`9Q;4L+IAARfWNaM@SM?974]BGE^(@R<(GHEJJ5B2~@>.L/DY591@@*8?g3PM<//_
@S1_3
CCACCACCACCTTCCGGATTGCCGCACGGCAGCACCGTCGCGGATTGAGCTGACGCCGGGCTATTTTCAGATAACCGCCACGCCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGGAAAAGCGGATTGCGGATATCAGGCAGGTTGAAACCGCAGCCCGCATCTTGGCCGGCGCTGTACTGGATAGCTGCCAGTATCAATATCAAACCGGGCCAGATTATTATTTTTA
+
~^`s?~XPu~:1~~~fw~ex1jK]h~~}H~V~IeG~GcO~A5~+~mg_E~.GN~U}xJ]o~xY=~d<~x8j~?U~~q~~~~~s@~~~\~~~~Y~oLO`~~de[Wi~~>~~~htF[Y~Bd~~\U>[sSm~~JN`VT~F~~~lUN~_lP^`y~J~~'~ZSOANH<^aY4Y~~1l1~cLWbZf~R``~`V=bUJ_`P~~X~~Xm~s[|~j~~~O~~^~p~;wMY~pi~Y?@~~KMy~WC[~~Y`~~~N~
@S1_4
GGTTGCTGAAACAGGAAGTTTTTCAAAAGGCGGCAGAACCGATTATGTAAACCACGGCGACGATCAGTTATCGCATTAAACTTCTGGAAGAGAATACCGGAGTAGCGCTGTTTTTCCGACGACTCGCAGCGTGACGTTGACAGCGGCGGCGAGCATTCTACTTTCCCGGCCAGAGACTGCTGAGCTGGCTGGAAAGTTGCCAAGCGAGCTGGCAACAGGTGAATGATGGCGTGGAACGCCAGGTGAATATTGTCATCAACAACCTGCTCTACCACCCCCAGGCCGTCGCCCAGTTGCTGGCGTGGCTGAATGAAAGTTACCCCTTTACCCAGTTTCACATCACCCGACAATCTATATGGGCGTCTGGGATTCGCTATTATACGAAGGTTTTTCACGTGCTATCGGCGTTCACGGGAACGAGGCGCTGGCAAA
+
+/=<@&6,2J19+(.09(?/:8O/;(,*%&G,1)(9+(&((3?8%+)(9/3@)@,-&E3'%?83'*6--80<683&-'3120.&.&/0%F2/=4ED:5518069)+)?788**0,4>7.+%+6?>J<6I<2',*==0.91(<86,.+)/6/0A07(02</..27B8A/(6+4>.,29A'2B>-=-%.9C*37@/9=264$8+544,(7*++('C-:-83,+1I2+89:/7;)D:'3&+54=*'-);'2?6;)2(&:?;46>8*<>,9,B.@:4.'()*$'+)4(-6A3<=+8F;@=(%(&9/=.(-=7@=:2%8679C,4)@6(8B-=D1,7,1//<5('1+5>-64'4+&:)&B+$,(-(:.:,;30;%3-533#*2';:2FD4@*G38,&=7=(>/G7;?.00,0%:B=30)?/01/$37//953L&37*
@S1_5
TCCGCCACTTCTCGGCATCCATTAAACGGGTCTGGTCGGTGGATTAACAGCAGATCCAGATGATCGGTCGCGAGATTAATTAGCGACTGTTCGGCGCTCTTAATGATGTGATCGCGGTCAGTGATGTAATGACCAATGACGTTTTCTTCACGCGCGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGGCCTCGCCAAACGCCGCTTCGCACTGATAGCCACCATAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGCGGACATATTCCAGTCCATAATCGCCAGTAGCCCATACAAAACGGGAAAACTCGGGCCTTGCGGCGCAATAGTAATACGCTGAACCATAATCACTTCTCTTATCAGATATGAGAGGAGTATACGCAAGATTAGGTTCAAAAGAGTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTCGCGTAATTTGCGCATTAATCGCTGCCGACAAAGGCGCAGCACCT
+
pxbkUKc~QFem]~uR~~bpqO{~(X~sh|B:BWp\e~6{~h~3as6-Re\rc~\cA~2qp~`dM~~bj~~L?~~hO~UdRv~cbI~j~z~_o3~k~^~9~~~7u~ks~p6~MuL^~~xpgi~~kYY;f-Ccp~f~~~o\Zs~VO~x~wW@Cor~~|~~H~~o[x3XS~~r~QQJO8~~|~~naJQS~OI~~~XYZZup~S~~gI~|N~_xZ~N~Ea~~_~~]r~e~B~T~@~~nCb~>~JiQ~|~+~~~StN_~~~c:{}~kbm~k~~]w~~~{X~eKX~M~IpxCK?~tm~G~7~R~rs`HQS~X~SfGNb~D~Q~~?~YtbcZRMp'n~L|~NTR4if~f~k\ak[Dr2b~QvXfqxRF\aq;t~VaAkEn`v{qH~~jp~g~Vn1~MT~XdZ]7IaQR~[oB~~|~~HIZ1v~?K~~F~fO^p[ai~aj{~~mg~PFrGU~~{r~tU~~P~~]W5~~~~UP~~l~~j~=w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt\pIg>~MFnz~LE^}Cn~sp~iSl~S~lKbGk~:~~+~~nru~~
@S1_6
GTACTTCTTCTTCGGCTGCTTACGCAGGCCATTCCACCGATTGTTGTTGCCGCACTTGTTGTAAACGACCACTGGCAGTTAGCGCGGTTTTGAAGTCGATGATGGCGTGCCATGATCTCATCGATTCCACGTTTTTCCAGTGCGCTACAAGTCAGAACCCGTGGCTCCTTCGTCGTATTTACGTCGCAGAATATGCAGGGCACTCTCGTACATATGCCGGGCAATGGCGACATTGTATGGTTATCGCCATCGTCTTTGTGATAATGATCAGATCAGCCACTTCATCAGCCCTTTTTTAATGCCCTGCAGATCATCGCCCGCCACCGGCAATATTGCAACGAGATAAAACAGTCCACCAGCGGGCGACTTCTGTTTCCGACTGCCCGACGCCAACCGTTTCGACAATCACTACGTCATAACCCGCTGCTTGCATAACAGCATTAATTCCCGCGCTCGCTGACTGGCACCGCCCAGATGACCGGAGGATGGTACCGGGCGAATAAACGCCGCTTCGGCACGCGCCAGGGTCCATTCATGCGGGTTTTATCCCCGAAATGCTACCGCCAGTGACCGGGCTGCTGGGTCGACCGCAATAACCGCGACCTTTAATCCCTTCGAATCAACAACATGCCAAAGGCCTCAAGAAAGGTACTTTTCCCCGCGCCGGGGTGCCGGTAACGCCCAGTCGCAGGGTGTTACCGAGTACGGCATAATGGCATCAAGCAGCTGCGTACTTAGTGCCTGAT
+
M0ICKB8/C8O08^\=G+)G==56/P8'*;BT,:,<&<-26%PC>9B4<2><D7GL2ANI?%4CU8-=731BG+I4cV&[/);L9E1+6AOMAB'?`C%6;2;0JFVID=5K?E1;:9>3]S++*-B(7/MFOJ;2?N%396@;>HMS.P/BJGF::M_D?L;U0K/32D`@=?g$KL<=4,-AL9$GG_<I89F>ENGS*3$?Il*.9>BBB52cB2FPEED'@T?J7I4:'4V8H&=-(B41S_0*E;=:B1<F->?<6I8L'6EJKE<:82@I14::1NJK)H@D5BC+:><ZI06.:F?G<B)BN<(*79;P.>,;B5&'H=>+CIG('57=:OB572N0@J)3KDC<=D%4C>L77ANN9E9I@>@RFZAJ60',M2@7:@+)A<O<@57Ua13@E7~XJAG+H71.>5`;8@=Y'N:A/3(.;IEC-3BT7P?+FFG4>30:JC89?5=D>>8<K'-XH4:+CUE:1</E17,$>_O?G935:@33-9E:.+=I?EEG/M]8EAM1+GGMB=-%?NGC3<@8(*CAI9M<G87<VD/';;O?O>@<:7B.52$LJDY-@J@6/:4B);C$K)@3@-1=XKBG?.@NJ?cON?E?UY0>O8>3:+<=F0b1>-U)5'TA+Rh=aD&;CEY)(=5[+4<J;YnSA<=MjVZ*MX?8C+IJ75M9G/L8R6.8HC59,5GA2ED@0GU894/D>%?GD:,A24<f;3N>>B.EL86&BGNb$&0>?F5GC9MM.69??4@?M3
@S1_7
CTCCATCTGTAGATAATCCCGTAGAGGACAGACCTGTGAGTAACCCGGCAACGAACGCATCTCCCGCCCCCGTGCTATCGACACAATTCACAGACATTCCAGCAAAATGGTGAACTTGTCCTCGATAACAGACCACCAACCTTCTGCACCCTTTAGTCACCAACAGCATGGCGATCTCATACTCTTTTGCCAGGGCGCATATATCCCGTCGTTCTGTGTTTTTCCACTGATAAGTCGCCATTCTTCTTCCGAGATGCTTACGACATCCGCCAGTTGTAGCGCCTGCCGCAAACACAAGCGGAGCAAATGCTCGTCTTGCCATAGAATCTTCACGAATATTAGGATCGAAGCTGACAAAACCTCCGGCTGCCGGATCGCCGTCATCGCAGTAAATGCGCTGGTACGCGAAGGCTCGGCAGACAACGCAATTGAACAGAGAT
+
L<;N7M7?><Y1B<?6<>E3,58.=+2TJ?-0>?(9Q9:;79AV8C46DV'72O<2\C.6FH<4J>-F:>.EN40F;:>,N@UA<:IT@V3632''3/HB0;L)C%6+;KE6:/:8?15-C%RO3=S<B2@IA;95<0N:$,1P4A47I'XZ(MLI853<=JH+G/O2L5,L964/:%=1(U/AJ>RCI.-5=POG@HW:?@G<M?A5?@b->C4LD/==J.56&C',;>%>@6W<K)39BF~CQ4%A:>*3BM&0?@I=A7g0AU.;iN7.A77&*8A=L23f*4DA8=AU7ABT(5O?.1E4&>5,M:@2A71D@:I;:QNE&=B*5>.;3K05N<9FL=U[IC/M(<J<9DC:D6[Y8,9*<?M7>3)N2>K>0dOF<ED798E@/D>%6:+GWV*]DCL:01;L17+.%H<P-D=IN>J0Q:;9N>8*DE=9PQFA
@S1_8
TGACCATAGATTAATACCTGAAGCGACTGAAGCCCAAACCTGAGGGTCTTTAGTGGTCCTGCACCATTCAATCAAAATATCTACATCGATTTTCGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAGCCGCCCTGTTGTTGATCCTCCGTACCACAAAAATGCGACTGAAAATTCTTTTGGCATCCATGCAGCGGTGATACCGATAGCGTCTTCGAAAGAATAAATGTAGCCAAAATGCTCATCAACAACAGCGAAATTGTATCAGCCATTCTAGCTTTTCAGCCTCGTTGCCATCGAAGCGCAATGTGGCATCGATAACACGTTCCATTCATAATCCAGATATCCGCCGAGATCGTTGTGATCTCTTTGGAACCTCTGGATTGCAGCGGATATTCCGATTGTTCGTAGCGCAAGACCTAGTGTATC
+
9)Y'FODZJJ3pM/cKH<4A6>BR35`[@X9*]2,T9fMboY]*=6MmE9PN~9[3AT?7+J:<4L3AI8My0~)S612N>^B>5>DvE;6HjU;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E3<L4H?MKZ)TI5%G*@WB2~Z4<GJE.S=I~KL4I/9<=I3~4Db8;QLQ3ihT[~?=SNw3P)<@C`05_HE/3B=RI?gPM]HH9>l@/;FYK9J55P>B?:F^N9MM'KDNdC>EWKt<~]EK477L%c5@70=<>@+?AbC?@7eI\:<[6Z`MB2AS.zGJ/bsBL)83oN[Ol6OXB/1)=@ORE6H%E8&ID~BF>M-LS|BP58&(KC,)]46S>55:O6^IE?7`1;~;;A.U+AWO;:27B=?6YaBI1N;(3X;H5;aT0>(DT9;2ZQL=CA]>?N>YC)]I]F:AX7I=d'X
@S1_9
GAATGATCCGTGACAGCGTGGTATGGCTGCAACCGCACTGGCACGAAACAGCACGCTACCGTCCTGTACCACTGTCCCGCATGGACGCTTTCGCCTTCGCCTTTTTGCTGCGGGATTGGTTCGCCCGTCAGCATCGCTTCATCCAGCCATGCTTCGCCCTGGGTAATCTCGCCATCTACCGGCACGCGATCGCCGGCGTCAGGCGCAGCAACATACCTGGCTGCACTTCCGCCAGAGGCACGCTTTTTTCACCTTCGTCAGTAACCAGGCGCGCCTCGGTGGGGTTAAATCGAGTAATTTCTCCAGCGCTTAGAAGAACGCTGCGTGCGCGTGCTTCCAGCATATGCCGAGATTGATCAGACCGATAATCATCGCGCTGGCTTCGTATAAAGATGTCGCGCTTCCATCGGGAACCACTGCGGCCACAGGTTGACGCTCATCGAATAGAGCCACGCCACGCCAGTACCCAGCGCCACCAGCGTATCCATCGTCGCTGCACCGTTCAGCAGGCTTTTCCATCACTGCGGTAAAAATGGCCGCCGGCGAAAACCATCACCGCCAGG
+
X<JNO~fg>\R~vw~lpC~~Z{ni]Q~j~c.Ci~>g|m~l~~cj\`3~V~bsa~@m~~9~K~wc~~|eR`~~DLJe\~Hv~[~EW~c2rT~lAb~~~aA~~~~~,~G]~9~^_~her~g~J4f1PN~Ct~~`~n>~TO~~S}WaO~~~eZ~_G~a\J;Q~-P~q~~J~~B~~o~`~lRm~[6HS~Yr~^qfJ~K~Z~~D~~~|Y~~<A~^<~M~P~Wp{cI~r~~B6~~~Ski~~;mzH`~~H~~\i&~~ctu~Ze~G/x9TJY~~^VNjd~Sq~M~5~_~`~q~A3uP~T7?N\~~i@~~X~/~eO]hKkQ[W~>^s}^a~ah~l=v~~YpQ,q~SoRjj~~u6k}MDH[k~~~~7uI~mgL~g~aiAw~rK~~~~z~~~UKb~~K~ZYb~os_~FpXPO=qHnoDn~8OnX]~>~~zK(~~od~I[kdnjW~x~R~^~oqmx~Vho~~i~~WY~SeYm|~7~l|~~N~~lW;L~[cZ@\t:D~H@~rKe60U~Z~n@~U~PozJC~rP~~~|~~~|_L~tOv~~~rX~U[`g{:a~~~~d~~EXT~~wB\1X~~7gSEVje
@S1_10
AAGATGCGGGAATCCCGCAAGGCGTATATGGCTGGCTAAATGCCGACAACGACGGTGTCAGTCAAATGATTAAAGATTCGCGCATTGCTGCTGTCACGGTGACCGGAAGTGTTCGTGCGGGAGCGCTATTGGCGCACAGGCTGGAGCGGCACTGAAAAAATGCGTACTGGAACCTGGGCGGTTCGGATCCATTTATTGTGCTTAACGATGCCGATCGGAACTGGCGGTTAAAGCGGCGGTAGCCGGACGTTATCAGAATACCGGACAGGTTTGTGCAGCGGCAAAACGCTTTATTATCGAAGAGGGAATTGCTTCTGCATTTACCGAACGTTTTGTGGCAGCTGCGGCAGCCTTGAAAATGGGCGATCCCCGTGATGAAGAGAACGCTCTCGGACCAATG
+
;K?YKd)0B[,=CJ@%/:Ll<)(RVGZ4%MHI@)E1=FGSTJD=L:KRF?09AC,J/;TA*A0TVI;EG\MO`GBzY42R_9,MPB>8Q7*6)D>8DKQ0fD8YAL7=X>3RHFYN@9~7B)PXE30-V9E32Q)GC9dMuAZG)P>B*L*YN40J<8.DCIKIQ.8ILENK$II?O>W4-9*4@DT0NaIGbLG.26NVMTZ.BECG\LNy<33OK=7PI8NFc='.\O;~d5.@Ma>yIBmlxB-JT;RBEE?T9@_4E7CBNG9TDrSDA2U@H`AR88I13?n@T[`MBAEF?S?:Q7RG>J(=dB35-2J8EI%MZ:AL.%;T5L0<a:bI;<~9RCP8IASDA59<S+*\@=/e?7:KV7=DE=OL5\;5L0M2I=TBNXN3FT0<?N%H<=2X
@S1_11
ACGGTGTTGTAGTCTGCTCCAGCAATTCAACTGTAACGGCAGCGACAGGGTTTCGCCCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGAATGTCGCAATGTGACGCGGCGAAACATCTGCCAGCCAGAGCGCCAAGCAAAATCGCCGCTTCGTCTTCCTGGCTGCCTGGCTTAACATCACCGGCACCAGCTCGCGCACCAACAAACGGACACTCACAAAGTGGTGACCAGACCATTCCGGGCCAGGAGAACATATTTGCAGATTATGTTCATCAGCCAGCCGCCCAGCGGGCCGTTAGAGCCGTAGAACAGCAGAACACCAG
+
E^}AMGC[UN)Fi''d2INITc~^)~DEU5\XiVw%[y\&I]/~L1LPM|waKU>KD?`zELC:cwp=gS>~~ATL-*~>YS[3vuP>j~k;:k+~`vkC=-~w(OF/Q(~zEZ~>S@98~\C4Q+_$XTCRV>MG]f8~Q6slbUc0jW<cF<TT?ETTwo9AeUU@IL{XQPO,8~f[V\<ZsaAg4jI\KQ~~kB;~\eU~Eg~LPPl:?+QiOdXEGa(N&[Kl~DfX58EK~ETMR;Fc=TUJ5~^LLMXL9d(44QLwHc.-gW?4eRn\n<6~nRJ('cM:S=~HL8BiwEnLZ3PMG5r?~]<SBDTBfb:H~5_9@^Zl.Q&]FAwJ1OG1?AWNC~M3]F;J:VQHG?~7MZiQXLY]~)Nu~k5BdS2O
@S1_12
AAAGTAAGGGCGACGTGAGGGTGGATGGGCAGAACTCTCTTCTTGAAACATTCAATATGTACGTAGGGACATCTGGTACGGGTACGTTAACCCTGACGAATAACGGTACGCTGAATGTCGAAGGTGGAGAAGTTTACTTAGGTGTTTTTGAGCCTGCTGTAGGAACGCTAAACATTGGTGCTGCTCACGGTGAGGCGGCGGCAGATGCCGGATTTATCACCAATGCGACGAAAGTGGAGTTTGGTCTTGGCGAAG
+
n~=]O70>fDMRMC{~~1FG=0EG5:~[:Qj(O)L$lO>YPI~]ZSYEW]Jgc]sTTpB^J6MVjwVJ7RdG~K2F~_HF<bp~>aAcWP@aF[HuE]D:BfP|@T~@EFC?i;;`|JQBYN`]s8V|RW3QLTMZ<:W?>WL+dEcKL*\i?LQ6C:,Rd64~KBFEJ[QVE\G6)lA=T~*g7S|8KZZ~ONsWa~~sWOOZySOXJ`k&\ThQ:MITlcPGB8~+3YWK;86d\ULiGCjboHE^RJ+I=BM
@S1_13
ATGCTGCCGTCAATGTTTCCGGCATCCACATCACCAGGCCAGAGAGCGTAGGCCAGTTCGTCATCCAGTGTTTTCCATGTCTGCTTGTATTCGCGATGAATGGCAGCAATGACCGGGCTGATTTTTCCTGTTGAATTTTCACTGTGCTGTTGATTGGTTCTGGCGCGGGCGAGATCAACAACAGACGTGTATTTTCCGGTTTCCTTGCGTTCACCTTCGCGACGTTTTTTCCAGATGCGCATCTCTGCCTAATTTCGGGCATTTGGCACCATGCTTACATTTATGTTAACCCACCGATGGCATGCAGCTTAAGCTCCGGATACATGGCGTTAACTTCTGGCATTTTCATCAACGCTTCAACGATATGTCCGTTCGAATGTTGCCATGTCTTCCTGCAACAATTCCTGTGCGTTAATAACCATATCAACGGTGATGTTTCACATGTGTCGACTTAACCATGACAGCGTTCCTGTACTTCAGGGGACAGCTTGTCAAAATTGACGTTCATCGGATCGGATTCTGGTTCGACCGGAATAAAGGAAGCGGATTCCTCATCCCAGCGGTTTTCCGCATATATTCAGCATCCCAGGAATCGAGGGCAGGGCGGGGTATACCGGGTTTATCCTCGCGACAAGAAATCTTATAAGCGCAGTCCTGAGCAGCCGGATAATGTTCCAGGAATTGCCAGTAAATTTTGCGCGGGCGCGACGTTCATCACCGCTTCAATGGCAGTGGCTACAGCGACGGCACCTTCTTCCTTTATTGCCTTTCGTCCGGAATGGCGGGCGCAAATAAAGACTTTACTCATTTTGTTTTAACCTCAT
+
=0S'A.R>?5);/;1>&MiR*K7>?>;I*E??:<@nA%>CJ**[=5n>.fWE8H3O6/199F;H1>66?6U89>K9IJ:<JNCCC:?U?EJUX33CF>V5J:-ERVA3GlC*9LF&4H=7%65[>=BG>*?7<C?PA.-MB6<&.E@R='4&7%d8%-+?EB90IR*:@EH2$GG/<7@=8J=1Kh?LB.9855&*0A^574=7%Faa@?<R9<BEZ/)AJX<+2=D:*CC:;B3;O2T<HPNC8=N7/U;[OM@,74$:;07K7?I2GE/'-&2=>A7D?4/U,F?X=*NO414*4?I?HW@P=69%:11S<89?@S&)>P=5+E8M4C:>A=;AHIB0>8AX1=&6T'9<U8E?)@:J3I8865W@A+4,;9@-9@;6B75*C^.3))@6M;BCE+F60>:,MX33(0(1=7I.JR9M]V/896>@:4N@5I1C4;NK-<%AGI4@E/;2A@?=:@*I8<NB4)5&$CL-,L3M/%V:/9@H<CHL3L.@6%E*A`AA/<35J^B=b@N.<<;R,15L?VU9=C;)/'06~Q@7N2J96D>GB<1G0h,3U(A:E?^9,CC,@3UWWF74T9>@JFK>EUF/^K*19@?=3F+IX&4;5@02UEH5UAH0?$7&KRF2=ID3>6>b7H:@8,657*?4DJ;FK45CDh9D6)PJM;I0DE5&7@JB/8P8DK*>A8D6L(=.B9<>741>=]?J?N<3FL@;1BSI=AALC+>I^\6IG=73<9?>4>Fc86S)<LM<W`J,)7Q?6EM'11H/*K0L8Q82F45DAC.@BX1DIAG+7BB%7;0:483,H+6%8*DXF8&8JF?A762B;L0G48C&2:-=
@S1_14
ATTGCCACGACAATGCCTATGCCGGAGTACGATCCAGAGAATCCGCCGATGCTCGGTTTCTTTATGGTCGGGCGCATATCAGGAGATCCTCGGCAACATGCACAACCTGTCGGTGATACCGAAGCGGTTGACGTGTTCGTGTTCCCTGACGGTAGTGTCGAAGTGGAACTGTCTGACGAAGGCGATACCGTGGCGGACATGCTGCAATATGTACAGCTCGATCCGAAACGCTGTTAACTCAGTTCCGTGATCAAGTGAAGAAAACCGATCTTGATGCTGAACTGCAACAACAGTTCCTTGAAGAGTTCGAGGCAGGTTTGTACGGTTATACCTATCTTGAAGATGAATAATTAAGATTATTCTGCTGGCGGGTCGATTTATTTACGTAAATCGGTCCGCTTTCTTTTTATATATTCTTAAAAATAATTTGCTGCTTTTCTTATTAAATAATCTCCCTACAATCGCTGCATTAATTAAATGCAGAGGGACGGTTATGAAAAAATGGAAAGTACGTAGCGCGTTGGTGGCATTAATCGTGCTGCTGGCCGGTTGTTCCAGTAATGCGCAGTATAATAGCAGTGCATCGGGTAATGTCGCACCGCTGGGGTGGGATGTGCACTCAACGGTTCAGGGC
+
FW6I@26DP@O@0Y.EFN(OH~*OM7MJIdI7467G=@00V8Z<BvX*-9RK96R|@E$@UII&VVGEI-'CJ]41Z*5<;=(]E5[nN[>d[>j/F_&F$)@&eG26IKD;'\7^/B86My2qLA.;>/XM1IN@89HYa3E;@08DFBMIRXHD<,4,4?RI*\A;4-DAG-O&E=ZB4H1yUOCDTKG=.N=2JQAT8<:S??5;M-O9+[8[&/PUQ>E8B9N2@E<IXgSH=>`@QLKVG;/H?YS5HMQ.zDG?-]?g77FFcW=NF+e4=+2.;l:\)-=>ncP?VD>-0;%+4>3NO/9B3OERM6L1I+CG%I&75MII>IL\>W$C<H<T?7IB@=G@O0>00NK;B=d7=%B,7BEE/7?CA>oY.a;V**<DQ&RI=/V*B=0L4KG:\=1LNAGT>9)QI>;ANB.AF;C+IH0SILA\,FH4(E~O4?ESOW9V=L;:&QK%OR5OXIJ;FIBfEBMM7HZ<V3567BU8ID8OK@DF@EX~E=;/4>S>&LLW88@R-9*L3ISU@K@VGI63}C9CZ@Y9Cc1.5E[94;<<cCD>5;FQaQg:IFPZ%&3D;HHUDD/KRP>/:8TRD?kSE:/EU7AV8gM]F=OA67C>~YBHB<P'-NU{';E7D=-0;R(8CQ
@S1_15
TTTTATCATATTTAAGTTTAAAATTCATTGAGAATCAATAAGAAAATCAAAAATATCATTTGTTCGTCTTTTATTTTTATTAACACATTTTTTATTGCAACTGCTTTTATTGTGTTGTTTATGTCAACTATAACAAATGGCTTCAAATTCAGAAGTGTAGGAGAAAATCATAATTTAGATGTGAAATATGCTGGAATGGACGAAGGATGGTGTCATGTTAGCGCAGAAGGAAAAAATGGCATACTTTTAATGAGTCTATGGCCAAATGTATATAGGTGATAAAACTCAAATAAAGA
+
~)i~i~~ds~m~~~~^f~JFR\>2~ts_~~,t~VbR-L{_3~A~~~B3p1I~I~~~sbBcH~~~J~C~KnDNkN~Y'~E\pTI~R~d~Jl5>M~~F~~=~H~~d~xl~Nw5~~LhE~~~~Q~~M]wXNQI~HA~q~[~~Yii~_|[Ur5~O4k~P~WW~kO~cWW~>a~m~H5qWh~p~i[7Xv~WjPpGj~~~~(~~ao&~~~S~W~[FOd~j<~~[~Hg\~MVm~~~IY~8~r=n~~~~~B~T~[88M~jmxg~~Po~]~~LcXS~~.w~~~N2bm~f~~~4O~uIOK~[~rkR
@S1_16
AGAATAGATGACAATTGCGTAGATTATATATATGTAAGATTTGACAAAAATAGCATTTTCAAAAAACTTACCTACTTAAGAAAAGAGATGTATTAAAGGGAAAGCTCATCTTGATACAGATGTAATGGCTGATTGGGTAGATACTCAAAAAGAAATTAATTTATTTACTCTGGATCGCTCAGCAATATCAATAATAAAGATGAATTTAACAGGAAAGGTAACGAAAGATTAAATGAAAATACGAATCTCGCCGGGTACATGGTAA
+
4B?8LpdR=VTanGQJl~3,w~~\uXl6cRapQ\~\ScAa6j@~xbHaM<d5:NPbmGUWWGOs/?TF]k5RZF@TiV0(Pk6Z/V;w\`Q/ha~T\P}JH_~be{2VA8Xb~M;_4EXOdvREYNxG(RO6C<p45~KGc2lMA&>F.lSR`7o8EO>0.\;FU`9KJSO=GGYV2oZ7KAY<3A*J_@McYFjB5~J?RvJxAdPEH|Kg;f\A.^HOZiCF<6E~f]>GVW~S9?rO9+E*R*~TMG4:w4>ezPd]~~cRF
@S1_17
CGCCATGATTCTGGTGATAAATCGCGTAAGTCTATCCCGTTGATTCGGTAATGATCCCTGATATGAGAGAAAACCAGAAAGCGCGTCAGCAGTGAGCTTTTACCTGAACCGCTGCGACCAACCAACACTGCACGTGACCTGCTGGCAAAGTAAAGTTCAGCGGTCCGGCCAGCGTTTTACCTTCCGGCGACGTGATAAACAGATCCTCGGCCTCAATGGTCCCGGATCGGTCGATGCTATTTCCGTCTCACCGCGCTGCGGATGGGCGAGCGGGGTTTCCATAAACGTTTCTCAGACTGTCAGCTGCACCAACAGCCTGGGCTTTAGCATGTAAAACGACCGAGATCGCGTAATGGCTGGAAAACTCTGGCGCAAGGGATCAGGCCAGAAAACCCGAGCCAGGTCACGCCAGTATCGTAGTGACCAAAATCCAGCTCGCCGAGATAGGAAAAACCAAAGTAGACCGCCACCAGAGCAATTGACAGCGAGGTAAAAATTCGAGAATGCGGAGGATAAAAACGCCAGCCGTAGCACTTCCATTGTCCGTGGCGGAAATCTTCCGAAGCAGAACGAATAACTTTCAATTTCAGCTTCACCACCGACCAAAAATACGCAATGTTTCCATCCGCGCAGGCGATCGAGG
+
8bHGI1PBM]E1XG7.E@MFMG4;VNO;V%76nA'67<SD;.NP:E'A6:LC0++B==);%QE%&5K835&0:;*7-,;T&6A19189D:6DK>2M6'2?6GE30H(6:=2;H7.C>=&1:7:39.ACDJ1>*PF3D6'*HH$(+.EA.37?*35<9N,(2J@5EJ%PA(=O8=U;./?5QM7_A,T^a??E9B=*U>=?)[;:\O7-?NP<4FWMKN88;:'6?&O=>9>,8==K98T;28O[*K8;32GCA7=C88-9F0=@B=:>JLV?18&H092:@\@DI?LBP_%.C=3K=.8J]I8D.9<K4CF7/J>U89@HMAP>A-8A41:FlG:CB9hO(FFE(4CSBGD=L@%Y2M?])X3@3.39>F5+^~I&GZX9E/9*F:&<H@WK'0S57CC8:;;9VGRE3:AS?`iIN?4B,1g/9RT1@+?^>=M`362<DJO26:~0S48?X7EKG.%83)KG?146=<40G.:)'P3=C@&A;3X09=%A?KM+?,O').2JH,NJ>BI0EK6-@HIV4J)I/;:E(5F,R<<D*7=@V65CB+61L+C+;E:@C6IF*>Kc=5D*,D1@=]F-(&K;B=%(E:.92S,5Z<5<3<(8.3PB2/440+D7@D95A>CJ;5AQE:9WL;I=02B99P.?^J9
@S1_18
TGATCAGCGCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGTATCGCCCTGCCAAATCAGTTGCCGAATACCGTAACGACTGCGGATTTGTAATTTCAGCGGACTGTTTCGCCAGGTTTTAGATCCCACGGCGTTCGCCAGAAACACCGTTAACGTTTTCGCTGTCGGTACTCAAGAGTCGGTAGATTATTTCGCTGCGGATTGTCATAGCGACTACCCGTAACGACTGCTTTCGGCAACCTCGCCCGCA
+
:hKpxxYouH~V~TeZa~O~BiwF^U~x~]g~~xjT<r~ejX~[o~c~~vz~~=~TZl~~~^~i~a~v~Z>Vvp_Lk~~WP\~Da}^j~Uh~bLFO]~sGM{MrRpm~Je~]~~g~M~TK~~~=~~78nwLjX\Bm~b=u~~~c_QL[~cjh~Wn~~r~XP~~W~}~bA{~~mp~~~B5akl~esP<\p~xpZQ~V}fgnFVUd~~Ga;~~\Rg~tev~2[^]ds~~<e~t\Ry~~t}Tz`~&v?pRlMMZX[}~~|Q~~~^R~-~~`S9~
@S1_19
TCCCAGAAGGCCGGATTTTCTGGTTTCCAGTCGCGTAAAAGATAACGACTATTTTTCTCATTTTGCAGTGCCATATTGTTCCTCACATGCACACATTGGTAATGAAAAAAGACAAAACAGGAGGTAAGGCGCAATAGCCAGTTATTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGATTAAGTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAACGGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTTAGAATTAGTGATGATTTTTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTTTTATATTCCTCTGTTTACAACTTCCTCT
+
~aI2Z~~gWT3~z0~WTYd~O~r~~}jY]c~<t~@~~vL~~O}YPOsSk~~jsTTY~mv<~S~q*~Vn^eI3ct[c~~{CWo_zrw~W~^\~_S:K~[~IowL~RVb~~~~9N>~~he=c~b~~d~Hc:vquSl^T~~=ox~tt~Y_X~d~\w`B>[QV_~w~~~IF~~NW\~|~m~E~j[[w~~~~~~~QpU~PN~[~wX~~.{hobsK~~jZ{+~S~nD~~^vBonOT~iS~j~N;Cp~~UV~~V~~~U;mJO~2~TQ~O~5~~~~~~d~`gCXMJ1~~=~^~~@-gZ,Tl~WP~~AY_XI~~1>~LAx/JtK~ZS~~\~8~cDA~~LRTgJ~/L~~\~_H~~@~?Bj~dQ}BypL\eF]h^kWJ~~~~|;~[~r~~}cl~yO~@~~O~~pS~@XGnS~H~~~T{f~Z~_~r~~\{^=~H|PJc?f[vhI~L~aOQxJnoZL~G~7q~~e=oz~~~RCG~S{z~?~.~~o8Dj~0V~s~y~~~g~~~;~~m@oN~a~{FuQ~ii{koP~n~~^~~Nq~3broUH~~Z\re~qKQ?~ka8`~}@ZX0X~~Y
@S1_20
TTCGTTGACTTCGGGCGTCACGACGCGAGAGGAAATACCGCTGCCAGGCTTGTAGCGCAACAACAAATTATGCAATCGCTCTTCTTCAATCGGTTTCGCCAGATAATCGCTCATCCCTGCGCCAAGCAGCTTTCTTTTTGCCCGGCCATTGCATGCGCCTTACCGCGATAACCGGCGTTTGTTGCTGATGGGGGAGCTGGTGGATGAGCTCGCAGGCCCGAATGCCATCCATGTCAGGCATTTGAATATCCATTAAGATCAAATCGAACGGCATCTGTTTCGCCCGTCAACCGCCTGATGCCGCATCGCAAAGTTCCACATGTTGCACCATATCTTCCAGCAATGCGCGATAAGTTTCAGGTTAGCGGGGTTGTCATCAACTGCCATGACTGTCATTGCCAGCTTGCTTTCATCGGTTACAGGCAAAAGCGTGTTTTGTTTGTGATGACAAATTCCGTCAGGGCAGGCAACAGGCGCGTAGGTG
+
{~a[X~~Xd~7l~V~i~3tC[SPs~x~PI~nr~~~~~kW1PCnK_TcYV~N`;L~u~mt~V~D~~~~fD~TZ~~T;9~^Ci[iZk4~DpYwuS~]EZB\c|slpK~`~fn@~~\<`^~V~Y~Cobfd~Zp~~~f[BSk?h<~P~;VFO:L~I@~gi3~.\T~FMOS;PmH~s~~Y}~P~~_\~fI`~KAlXFTNXePH{~UH[~~cp~wQo0qTTix~djWkvZh~n~~~P~GZn~~~j`~~Mf@d~j~K)7ea]~~}ai|v_r~~Yhrrxhb~~U6e~~`n~~~~ouw~D@rUdY~l~ZEOrX~X\~kE`}dQl_L~~r~~{`I~g~a6~XRps7~~yJt:~8:GcQ~~~~~S~~GPdYTbti~~Xu~~~X~_[~jn~Ula~Kdr~[~^z:pUYnSuK~\~.~@Gj^eEb~XT~~~~>a~~fo~~~*K8iWlW~ubT~~]KuzNlK~IRP~~|TjPGVJ~~dg<M~Sc`E~ojQm2_[~`o~H
@S1_21
CAGACCGAACGCATATACCACAGTGGGTGACATGATAAAGCCGGAGGAAACTTGCCTCCGGCATTACTATTTACTTGCCTGTGACCGCTGCTGCCGTTCCTGGCACCATCAGCTCTTAGCAACGATAACAATCACCAAACCAACAAGCACCGGTACCGAGGTGCGTTTTACGACTTCAAACGGCGAGATCTTCGCCATCCCGGCAACCGCAACGACTACGCCAGAAACGGGCGAAAGGGTACGGCCCAGGTTTGACGCCTGCAGCATCGGGATAGTCAAATACGCCGGGTTAATGCCGGAAGAGTGCGCCAGTTTGGGATCATCTCAACAAACGCATAAAACGGCGCATTGCCTGAACCGGTCGTGACTGCCGCCAGCATGGTCAGAATCACCAATACCAGCATCAGGTGATACTCGCCGACCAGAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGCCCCTGAGCGAATACCCCAGGCGGCAACCAGCAGC
+
V$KmTF<dLOk(JH<~~bh;(K6@KFhU0~JZ~S@@vJ)1WT3/~A$w_Q2N~u]7@A]D<l[iJ}0,1e5\H<`F9M@U^*3J|OPra~uXfT>~?A~Cb1\:~LMgWKJGLNb4~'[M~T7O;+K6CJI0<e{l~6YUQ2Z\R<PB<>L:dRHZEebUzpH5ZCYX7F~XIX2ZfTY\e6SDI~[[L=%HcH=;HmPN<NmDk~[HPGe,LH0j*MPNXQl:V`E]Ej=?-bPU[>~~Ra~^k_So>fGTFy^ZI-H\TD~W0;@`Hy[XIH6~hYh+=sFPP/zvfDUITA`XJ[8PEP;KUBHKX{<kfO4ER$?GDQNUe@~~W5L~VEI~EbHZ[RP>.EAE-=IF_pYAhW<MLF92Y@_~'6XJHsF9~U<~cS+@;[N\EHqc]'S5A)d~8;7?/M2~bA~RQ~O\H~IK2B{O%>UA?6~1B2C,AG^_EI%m4ORMNYtBYgbY^4W~=T)MH*NF5?2KV3~\TBtc~d/TEQ~bWU]i=L$SNNWDK\KacK<2J2
@S1_22
GTCGGCGTGGCGCTGTTGCTGTGCGACAACATCCGGGAAGCGCGCGTGCTGGCAAATTGAACTCGATGCGCTAAACCAGACGCGAAAAGAGATCGAACAAGGAACTGCAAGTTGAAGCCCTGACCCTGTGCGAGAAACTGGAGGAAGTCGCGACACGCTACCCGGCGGGCTGGCAATGTATCACCCCGAATGGCATCAGGGCGTTGTCGGTATTCTGGCTTCGCGCATCAAAGAGCGTTTTCACCGTCCGGTTATCGCCTTTGCGCCAGCAGGTGATGGTACGCTGAAAGGTTCAGGTCGCTCCATTCAGGGGCTGCATATGCGTGATGCACTGGAGCGATTAGACACACTCTACCTGGCATGATACTGAAGTTTGGCGGTCATGCGATGGCGGCGGGTTTGTCGCTGGAAGAGGATAAATTCGAACTCTTTCAACAACGGTTTGGCGAACTGGTTACAGAGTGGCTGGACCCTTCGCTATTGCAATGGCGAAGTGGTGTCAGACGGTCCGTTAAGCCCCGCCGAAATGACCATGGAGTGGCGCAGTTGCTGCGCGATGCTGGCCGTGGGGGCGTGTTCCCGGAGCCGCTGTTTTGACGGTCATTTCGTCTGCTGCAACAGCGGCTGGTGGGCGAACGTC
+
=e.>K%A==6LD9(*?A1+36d(C=B49M>DL%K88K\8751>/4A396K,AK/G6I$C0&8&'DOP>M4KB;M71<??5PC:FK/%./160)7FGF.5@:BF8$@>]BA4?HB4AHI4<>?.@997+>,1Q4<G4%I20:<E/A=595>75@<L<KD?864G?E>63K>:F=AO*+DYME5.IF>4)1I:=@D?5EK%>8:48%CSBLN=?/.L:B+=K::K[)9GH2G6)/):EE7K?E6AMX<IA)4V<BHU3CDgM<JS-MK7@C/C9]4GT3?'5I>FV5D0<ND77=GV8,5;H;*.:LOL*;O8F9A10I9AC&;=%E;NI26@B:2?GBQK(ID6D6=9@9=GP;GR.EI<Q+>(jFAG8>+RJH2$@29D@M;=61PUOD:66Q8JC=)>=/;J;/J$9EDU?BS8JK62&1>L,:C5ME6M9FDJ:$JHE%34B/-[=S0>-28FA>>Z3IK-'$T;%42EHV=;+,:+&*AC6=P:k:NFE2MG260F*PYLL;H<'D?)GD3@/-=.'8:G)4=I)0?.*==;;5O<<X'2BH6HP5;<.K11A1iC9>6<>7O<,6;@4f6MH@/1M@B>TKE>%EEPF$MHKGGS?0=I0H0<N7B4;IG8-<:.D+?;A;E;D<93B9?7.E5$?
@S1_23
AATAAGAAGAGGGAAGACAACATTAGCAAGGTTGTGTACATTTGTACACAATTGCAGAGAGAGGAAATGACATGCGTCGCCCTAACGATCCGCAACGGCGAGAAAAAATTATCCAGGCCACGCTGGAGGCGAGTGAAACTTTACGGAATACATGCTGTTCGCACCGCAAAATTGCTACCCTTGCCGGGGTACCGTTGGGATCGATGACCTCTATTTTTCAGGAATTGATGAGTTGTGCTGGGGCGTTCAGCAGTTTTACTGAGATTATGTCCCGGCAATATCAGGCATGTTTTAGCGATGTTAGTGATGCTCAAGGCGCATGCCAGCTATCACCGATATGATCTACAGCCACAGGTTGCAACGCCGGATAATATGGAGCTGATGTACCAGCTCACGCGCTGGCTAGCCAAAAACCGCTATTAAAAACGGTAATGCAAAACTGGATGCAGCGCAGTCAGCAAACGC
+
^;:=@'<B<@14(7c&6_UEC/ZE-:DAJ^-6:>I=)4+>8IG9,4::GLB:>@A.=6G65M-0ORCUC4<~'EO/=5)3C1.C6G7H'@A7YE%L.CHIQ37<<2AU~1D/PK8E@C%A4A<2K<?XB85'*,>>6B<J7/^3=7<)=<1G).<:,%8EM.GU3H<(:<NE,9<@1Q/D9MVUjR8+T177LA4*93.5C>b5NYM*M?GG:22P-?f@4KN+U-D688@>M)I4%0K:E,/A78>;:%$0LNHH><@9ICQ0E3;4:4CA873014A,5A5B$(Q>&%P7C7=P?;C<07@(/I28@JYKU3[<IN=JO:.)3/Z5@B45<J7-.>\EMT(7/%H<:455/T8QAK1DZ;V;44)P6&A.X/<,0F@@g99CJE@R(GA%E?V<6~9@&=4=B2A7VDP<@5-O=27)=P*0V?/G(>L@=+*BJ1[GOMFZB89C@DE?+6E'JMI9OBZP4
@S1_24
CACTACAGTGATATTTTCTTCTTTTACGCCAGAGACATAAATATCTTCCACAATGTACTGCGCCAGCGGACCGGACTTGCCCGTCGAGTGGATATTAATGGTGGGAATACGTCGTTTCGGATAGATGCCGCAGCGTAATGTGCCGCCACAGTCGATTACCGCGACACCAATTTCCGCCTCCGCGGGTTCACCTTCTTTAAATCCGTCAATAGCCTGCCAGCCAGTAAGCTGTGCCAGTTTGTCAACAATCG
+
SKRj~~[~/~I~}~Q^QUw[~=MGW:~Vkgj~w~9Gw^>cC~b~~a~~fpWPaS[~X=~rYS[~~_~^~~qwf~NOLFJwfQ~~g~nm~>F~YSu<vSPJ~~~~n~Jj~BG[Y~Op~l~Ws~L~R~lw~kpWXGSv~aF~i5~~~>IU^3o~~~P6V~e?S,HY~_~~~uo;xcxOU~gb~3~tlJb~{xz}c~~[LhH~Bf~~~b~~~N\p~=LkP^Bz,~[PYDohr~~}JoN~~~k~~~X~~S^~`fq
@S1_25
CAAAGGCTCGCCCATGCCGGTGTATCCTGGCGGGGTCCAGACATACATCTGACGTTCAGATGCAATGCGTTGGAGTGGCAAGTTATGGCGATCAAATCACCATGCGCAACAGAACGCGTATCCAGATAACTGCCTGGCACCAGAATCATACTGGAGTTAACCTGGCGCTGAGGCTTAGTCATTGCGGTGCCTGTATCAATGCTGCGTACACCATCAACATTGAAAAAATATCGTACAGGTTGCCTTTCAGGATAGGTGTGCGCCACGACCAGATCC
+
VIA}KOOL[H^CL]G0x}SL`u\YRA=GFHIYaXTxnh1R>eRH?zK9R^CDV~[<~UAD~X[L&~GogJJ^}[5:E@$UZCWDCE=~WK~DdZ`dYgH=~O{o>^_@[_jH`MY+OS$8~~:OIV%/KHA3UrYeVIa*lUIU0bFBF16.bAQ;pB>'G<4~baN6p@8^iPEU'YUG^\IOZYHR}DC$M4~@l;1^I=;~KNBLnnPDCyP~Cs@~=P~HUtV</ZV;TN6*~5=R~\T~F5|V~pQr6MAK4TU9~}DSJ8D6?OIs=~kP
@S1_26
GTGCTGGTGAATATTGTTGAATGCTATATGCCAGTATTTAAACTCATATCATCTGTCAGAGTTTTCCCGAAGAATATAGTGATTACGACAGTACTAGAAAGAATATAATTAACCTGTTGAGGAGGCTGTTCGCAATAGTGAAAAAATGTCGTTGAGTGACAGCGAACTTGATGCGGCATTTTATGCTGTAATCGTCATGCTTGATGAGGCAATATTGTGTTCAGAGCTTCCCTGTAGAAAAGAATGGCGTGATAATCTTTTGCAGATAAAATATTTCGGACACTCCACTGGGGGGTCGAGTTCTTTTTAAACTTGATAAATCATCGAATCGGGAAGTCAGCTGGATGGGTCTTTCTCCTGTGCCTGTTACTGGGTTTCAGAGGTAAATATTCCGTGGGTAGTAATGATGAAATCAATAATATATATCGAGGCTGAGGCGACAATGTGAATTGAATGTTGCAATCGCGAAGGAAACAATATTTCACTCAGGGAAAAAAAGTATAAATCATCGAGGCTTGGTTTCTATTTATTACTTGTGGTATTGTTGCTGTCTATTTTGTGGTTTTATCCATGATTTATATGAGATGATTTTATGCTTAAGAAGACATTTTCATTATTTCTCTGGTTTTTTGTTTCTGTCTTCGTTCTGTCTGTTTGCTATGTTATCGGCGTGTTCAGAAACTGGACAGATACTACAACTGCACTTTACTGGATTTCTGTGATTCTTGTTACTCTTCCTTTAAATTTATTATGGATTGTATCCATAATTACTTTTCTGCAGGAAAA
+
~~~T~sYoGv~~JR<mlj*h~~~EU~~C~_2u~j~q~M~,r{~k~r~N@~}qnh~rO[|~~gib~I~xD~y~[L~R~~Otd~M~Gy[Z~~Ph7h~~vzP~[~b{~M|o~~Kc~FMy~X~m@~.~d}~=\~pen~F]~~~~dwIL~DtXMq~6Yv~mYv^cX~~v~~~yoe^~@W~uMm~]~~`O]Z~{~D~~~~Nl~~~=MC:T`~~p?n~~W~~c~}C|o~S_hd~~Kx<[~~^~c-Tjo~f~~aV~~JQO|SrJe:Iu~~~OxZE>[]p{Y~X~~\e~je~~gNC~S4l~.T~zq4j}`>\hzbJy~_W8~F~XYA~[Fk8G~~oF~<qI~~aoFo~~~;~o~~w9~v_~~b~}_]rHN~WCbgdm2OO~T~?O~~3^ZaU-~<g~N;EL~LUMxhj{f~M~tT~O~~p~Ft~~dY~xH~~~~~~aE^~q~3=R;~P~Tn`JJQ~sY\.e~sG~e~B[J~~~~~-~j~\~n~~~~[?9}Aiu}`X~M`SDC~~:~|u`{~~P~v~c~~gb~~3X~C~BUQ~]IwN~X~~~~~~RYwc9L~f~bUBZ]?Na>K~~~~q~lot<SoWZ~~^G`t~r~~~&w~Mh;~gv{7i~^B~tcA~Kr?X~}~\Zn6CM~V{~P~^z~x`BkO~~=a~cT~M~~X4U[FeT`~~`~~~kp~_~N~\7TQfW~x~z~~~;~~AC~~U^~AzJ~8~:~G~~\ZQ>~~jf~NX~D_t}5~8~~~~rknaa}U[~s[~E[^]Gpyvd4QF<A~|~xd`~~q[d~fRP~DZFTf2~Dy7~~J~~CNZkaidK?ot~-~
@S1_27
CAGTGCCAGCAGGCACCAGCCCAGGCTGGCATGGCACCAGAAAACCAGGCGCAGGCCCAGCAATCCAGCGGGAGTTTCTGGATGCCGCTATGGCCGGTTACATGATGGGGCGTCTGATGGGCGGCGGCGCGGGATTTGCACAGCAGCCGCTGTTCTCCTCAAAAACCCAGCCAGCCCGGCTTACGGTAAATATACCGACGCGACGGGTAAAAACTATGGCGCAGCCCAGCCAGGCCGCACCATGACCGTACCGAAGACAGCCATGGCACCAAAACCGGCGACCACCACTACGTTACCCGTGGCGGTTTTGGTGAATCTGTTGCCAAACAAAGCACTATCAGCGTAGCGCAACTGGCACCTCTTCTCGTTCAATGGGTGGCTGATACCGATGGAAAGAGTAGTATACCGAGCGCCGGACTGGCGTGAGAAAGCCCACGAATACGGTTTCAATTTTCACACCATGTACGGGAGCCGTACTGGTGTGAAGATGCTTACTACAAGTTGACCCTCGCCCAGGTTGAAAAGCTGGAAGAAGTCACCGCCGAACTGCACCAGATGTGCCTGAAAGTGGTGGAAAAAGTGATCGCCAGCGATGAGCTGATGACCAAATTCCGCATTCCAAAACACACCTGGAGTTTTGTGCGTCA
+
g=~^g~p\~X~|?Rn~TQ~>GM~I_~gk|a~Ig|W~ev~Y~~~~~A~?Xp~PlcH}R_N~~~t6u~~~Xs~PMf~~Zkww~ouK~~~~G~f~~~~Ijh~~?f~6~n~T=ez~~:@Y~~@~kma9_GN{u~ffNTjE~BHxmqpAvb`OFh~a~BR~QcuuJ@?FE\-~dJ[~j~v~B/D~U~`=~w.~~ai~h\~^~~=~~`eA==~J~~~FzZ~Y~~NZJ~~b4j~jK~N~2x~A~~2[~~fG7Ndm~b~~~iX~~BM~~_}k1ktiFa~r\=~KU~~P\[~Q~K~t6~mmR~:5kzXb;~~L~~[/b5~~I~~~5c\~W{^X{cD~~M^}C]x~~~xU~x~~j[|Y~~J~fY~~j~~]~Q~;]f~~OZ4~~tfT~~\g~V=~r~~A~~Q~~~k~UO~TY~.VegYK_yw~~g~Vc{]JI]uuLGeQ[UgbDU~ok~~~cG~Ft^a~~n~~~\\~h~>s;Z-KqhjAU~~f~Yrk}~BhX;POao;zF~TLQUEq~_d~KOS>kt]~^eQeWPcfnTF{J^~Ib~~~EJ~VG~GbFh_U~_~QtG}~K~sY~PfI~~A~~r~/Z,cQUshO~NO]C{VTS~\O~r\qmPMO~=P~~cEE._C~\XFd~`gP8~N~MYgjmc~Di~~[E~RF:Z~`v+~]MApQ}m~
@S1_28
ACAGAAAACACACGAAAGTTAACGTTGACGTGAGAAACCCTGGGAGCGTTTATTCTTGCTTCTACTTTCGAAGATGACAAAACAGCGGCTCAAACCCACTATGATGCTGTCTGGCTGAGGGATGTTTATGGGGCTATATGGCATTAGTATAGATCAGGGAAATAGTTAGCCGCAAAAAAGGTTCTGCTCACCCTATGGATTATATGTCTACGCCCGACCAGATTAGCGGATGCAAGGACGTCA
+
F6>:77&9@=00.Z75:<-=,C:7FRDW62%/=<>JJ?5:-:B47'@J=C7?:K(1DC0,'-2;BI5;8>&=*CG:B831.>K>8UH/B$5A)>-E7:1F*27+Q0;@?EGC7B6G>-'6)3Z.G,K0<-'<88@4=.\1LGO1:4*+7(7:27=+9:4M?3:$?)41/08+V669A6;%5M8?1%@A:$;)0&$I'0,16<55P?B<&1=3.OP5R;'6;=6C;6?=>@Bc2$2,?%>=./K
@S1_29
AAAATCAGCAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCATCTCAATTAACTGGTTGGCTTGCCAGAACTCAGCAAATGGCGGCAATTCAACCTGCTGGCTTGCCCCGCGCTGCCGGGCAACGTTATAAAACGTTTCCAGCCATTGCAGCTCACTTTTTCCTTCCGTAAAACGTGCATAACCGCCCTTCTCCCACGTTCATTAACTCGGCAAAAACATCAAAATCATTACGCGCTTCATAGCGTGGCGGCACCACTGCTTCATGGCACCAGATGCTGATACTGTAACTCACCGGTCATGGTGAGATCATTACGCTCAAAAGAGGTAGTCGCAGGCAGAACGATATCCGCGTGTTTCGCCGCCGCCGTCCAGAAGCATTCAGAGATCACCCAGCTCCGGTTT
+
I,EF=DE=*8;,&PM'585:I9:E63T=CNKa=)E[5T<LIMXK579?C/V<?MD8*-75>C4%F==>:<816J>,.PB7)+H,=ZW?+5JAU@-0(AC;(%.NJC[<@-H.2(GD%EGAa*2;CLA2<5C%II:.\9,?=O12<X:a0C,DF7,QDE-B=5BJ@'<?Q@APYI+:5%Q<C%BRLGK>]</aF6IKM39G7^C5651*5+&<BC9d;E>PD0N:h1GLU-A4A4>:'2=KK>6<00<+O<f@/:=.@3a%M@4<96M:>L378&6'1F-AE-CM>Cj@O^A5*M3;CA8D<+~J,6LJ?=S4AA,B4,FCA7SCD/AMH=?G??+08<c:W;C*%52IPT<=49D<(I785LAKPD$3/>/A<JD<AP4=KD>A@D'.=N^HE@,-IBNT.&?@83?
@S1_30
TGCACAAATTCCCCATTTGCGGGTCATTCATCTGGCGCAAAACCAGGGGAAAGCCATTGCGCTTAAAACCGGAGCTGCCGCGGCGAAAAGTGAATATCTGGTGTGCATTGATGGCGATGCGTTATTAGACCGCGATGCGGCGGCATATATTGTGGAACCGATGTTGTACAACCCGCGTGTGGGTGCCGTAACCGGTAATCCTCGTATTCGAACACGTTCTACCCTGGTGGGTAAAATTCAGGTTGGCGAGTATGCCTCAATTATTGGTTTATCAAGCGAACCCAGCGTATCCTATGGAAACGTATTTACCGTTTCCCGGTGTTATTGCCGCATTTCGTCGCAGCGCCCTGGCAGAAGTGGGTTACTGGAGTGACGATATGATCACCGAAGATATTGATATTAGCTGGAAGCTGCAGTTGAATCAGTGGACGATTTTTCACGAGCCACGGCGCTGTGCTGGATATTAATGCCTGAAACGTTAAAAGGGCTGTGGAACAGCGCCTGCGCTTGGGCTCAGGGCGGTGCAGAAGTATTCCTCAAA
+
9BK6XdQH[AJE?I<B)VD/T'6/=5@FEB6Sd8'4ERQAHR='AJVCD>eLNCR/*8JG+7@%TPD>eJT^BD;:521,X@PHaaM<4N:F<Kc4UBZ2C-,<G=HQC.7MC~>Q`A1AE@)ZBs?JR;R;>WI=7GB-KLR6LD=|<CQY951.CDNJ5Ep_@k9%_NAHAG4D2EVS>$L$55.*MUL_?)V5=B5:7H9)G@\M<O],Ot,;4C=\=,5NA?bSVB/@A>T+3M2TC+8H)J`E4ISD+$IDN_=g?RNW4F:J<@C4T.3WO@Pb,GB1hA~L?=%22N&J<I=~,5D[:J0?/[=DC4%BH%D>=DCU;XDnD6<bN5T*V;Q<E26@J6ZI7O%^;DOdNI::Uc7G1?~=+Q&H;7*i@:G~+j]LTK%GJHWWF@BL5R*8k,79H:F+]D*<C<>K~?:'&CYG:LIADK,T/;/N](34EEC?XX.7HM8I71FCTF;LHMEM>~S:'lAaD;K?52tRW7Q@=M:EIGG9J3~)C3<D12S%AWO~%M3Wk;IJ>`F(W5;EKIF5Q9,:NZIEN?EO2
@S1_31
TGCGAGCAAACATCGCGATTAGGTGGGCACGCGTAGTGAGAAAACACGCACTTTTTTACGATAATTTCCTGAGGTACTCACTTCGAGTACCTGAGTCATTCCGGCGCTAAACTCATCGCTATACTTGTTATAAATCATTGTTACTGCACGACTATTTGCGTATTTAAGTGCAGATGCAATATTAGATGATGTAAACCAAACACCATGCATATCACGGGTGGGCACC
+
~~8`?{}fQMv~b_d{/jFPbHp~~]fv~~amse~|E_~EpX~~}AO~^C~~RSe?_~g~~~lQZQ{QspD~~~gn~e0Pn~~~~Qw[HCZ~~v~@~b?Q~MJw~a~~~~~`|Y~vmr~ef~~de~X?JIX~[Rn9witUg^dH~`m~~UePBPcZ~~`~x}~~~D1Ztar~~~~SM@0~FS~PeEY`u~UT_~R>~3LZcl~~Zi~jq/~~T~~h~~~a~~{~m~
@S1_32
CTTGCTGAATTACTGAAACCTGGCGGAAAAGAGATCCTATACCGAAGGTAAAGATGAAATGGCGTGGCTGAAATTTTTCTATGATGCCGCTCAGAAAGGTGCTCGTGCGAACGCGTGACTATGCCGATGTTTAATGCCTTCTGGCAGCAAAATAAACTGATCGAAATGCGCCGCAGCGAGAAGAACGAACAGTACGTTCGTTATCTGATTTCCGGCCCGATCCGGTGAAAAATGCGCTGGGTACGCCAAGCGGCAAAATTGAGATTTACTCCAAAACGCTGGAAAAATTTGCTATAAGGATTGCCCGGCACACCCAACCTGGCTTGCGCCTGATGAGTGGAAGGGTACCGCCGACGAGAAGCAGTTGCAGCTTCTACCGCACATCCGGCACACCGTTTACATAGTCAGCTTAACTATGCGGAACTGCGTAAAAAATATGCGGTTGCAGATCGTGAACCAATCACTATTCACACCGAAATGCTGCTCGCTTTGGTATTGCGAATGGTGATCTGGTGCGTGTGTGGAACAACGCGGTCAGATTCTGA
+
2IEH?Q&RA7O'Y>@U>%GQ6tRL?88?6M%=>E=0==:4_+E3Qo&4<k;Z;0GKK5@\]@HI=fO,I)8FA0.G.ANP@,KMDHOFTEC/{AMKOUN@8=%KAA:]^>K=Q>@<%E_5.O;@8>0~7XPA71BJGObCCH6;%x~>D]Fo)6?:FXHRN?9<D/=07:tM:5':D&I*:F><PPd>%FD0<2@681JBOI5*5F<Lb</7\BZ*HU@HOdM-.DH=&;3P<=TV]C^6U>@/V<CSC_Q:7ZLJ@<=@~CFJ7?DB]PK/40F>P-6;=%FF9HGJhfA;S'k(PBD)H6CPJ,3RCMAU->P<%>=<J3HC5GY;@?=*gUTr:=2O+GH2uNS=04J2=:IXYD5;:ZLG.YF>7LBII/PH6hq<2~SB:R=4=ZSrPDF7?BGIE,H5DO5LMC>WC6=1>*;Lc0),$h;@Q8?=J(YD2@9X:~M1E@:^T^yO?>6?=U4B.FS/f,I/T8<BG+h2UF@JVNQ91~$S64;:.BN?\>UNI4F88DM@A30<9]F?9F7A.X/5>U`9GP>7g:RE3[wH?.`J=
@S1_33
GAGCAGGTCTGAAATCCTGCCTGAACCCGCAACCAAATCCCACCTGGGCCAACCGCATGTCCCCAGAGTAACTGCGCTTCAGCCGCCTCCGTTTCCCCATTGCTTCGTTCACCTTCACTCTTTAGCCAAATCCGATCTGTGTCGCTCCAATCCAGCTGTAACACTCCAGCTGAAATTGTTGGTGTTATCCGACCGTTGCCATTCCAGTTGATCCAGCAGAACCAGATAATTAATCGCACTGTCGTGAATCGCATGCCCCTGTATTGCCGAATGCAGCCTTCCGGTCGGCATCGGTAA
+
CU4G*I8U<_.V*J;J>4HNJ=K09MC=W*U>Y><:&E1LS7E78V[H>D>>7*UC1=U~?*=I@(_PF*CNH?wVGYB<?5L~8FB>:KM(-@JUAc{?=T3m81S5>;DPB81-3HQPIXRM;T`PO^40NJ.tR9D5E)<?HATP?HF?CM24E@fK=BR.38@<CeU@~D4oi%OM~K1COH(<+u>?RDV<OIHHFT+`=8[IG&>F*WASCBC]QWJG?Y_DD\3/MF>-3I.NIBK*K1WDGMA?cB>K=I7W[M<H;L+QK2EKj8NIMn5<K}-~AAKS@[)<H><:@
@S1_34
ATTAACGCCAGAGCAATTACAGAACACGCCGGGATCGCGAAAAGTAAAAGTGCGCAGCTATTGCATCAGTTTAATCTGGCTCGTAAGCAGCCTTTTACTCGCTGGGTGATGGCAATGGGAATACCGCTAACCCGGGCGGCGCTTAATGCCAGTGATGAACGGTCCTGGTCGCAACTTTTATTTAGCACGGAGCAGTTCTGCAGCAGCTGCCGGGGACTGGATCGGGGCGCGCCAGACAGGTTATTGATGGAAGGAAAAGCGCAATCAAGAAGCTGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTCGTGGCTGTAGTAAAGACCGGTAATCCAGCTAAGGCGTAGCGCCAGTAAGCGGGCAAAAAAGCCGAATACCAGGGTGGAGATAATTACCACATCATGGTTAGAAACATAGTGTTGCAGCGCGATGTACAGACGCGGAGGCAAATGAGACACCGGCATACAACTCTTTCTGGA
+
/L;JZ=G:VOGY0~ZXCK~wBNAeIIahb=SQWLZDX*<~A@V*@DZPLG8^S6P~O~c~w1PAPxRo~Lju[M{}NT:~YCX?IuvUuJTPMhc~L/kHOIBym=RFO\~q\WhgA]8:7]HDA;C\>ldKAcFh[uqvEmc*>ERM+[Eo7\t3S<cc_C~]0BQ_s8X}~8YxL?G=WJc_hZgIkEuDTi'XhB6KI`G4q(~-@2?nM$EDZ9J@;DA`lB7YA?4W[L]C<]EJdR~~B+~YrIs.J9eB8z~H9_^R<Li2q:NHJ=G[~1FhM~oqfI9~Dd*:Pa\K|QNPI[ugU~?QaB3??~f_FYIGL8?[rWiPs,aCLHh.1`Dh*6,~/R[5?e;I|53P_W.VYPV6tLn~=;c~~Qt-4DnE5_\(kOQS8DzchQU]\MZtG;RF[L5OM~gRK@SB^ijS8`2Y&ZH\9aE>~oRFEXjcEH/MUF^-<CF(`IZa2bM~Qc9<HJPZb2<fK~B`C~O<~Rx_~D>_3IYFsPOAy_
@S1_35
CAACCGTGGTAACTCCGGTGGGCGCTGGTTAACCTGAACGGCGACTGATCGGTATCAACACCGCGATCCTCGCACCGGACGGCGGCAACTGGTATCGGTTTTGCTATCCCGAGCAAATGGTGAAAAACCTGACCTCGCAGATGGTGGAATACGGCCAGGTGAAACGCGGTGAGCTGGGTATTATGGGGACTGAGCTGAATTCCGAACTGCGAAAGCGATGAAAGTTGACGCCCAGCGCGGTGCTTTCGTAAGCCAGGTTCTGCCTAATTCCTCCGCTGCAAAAGCGGGCATTAAAGCGGGTGATGTGATCACCTCACTGAACGGTAAGCCAATCAGCAGCTTTGCCGCACTGCGTGCTCAGGTGGGTACTATGCCGGTGGGCAGCAAACTGACCCTGGCTTGCTGCGCGACGGTAAGCAGGTCA
+
IkG0SCH7TOH<VRTGHR9~0G@JCJGE)M=)KeCXR1A~9?<0EC-5<=5P;dR4H?,$2@?6>\@D?WDI:6/5KD>=8]BZ6;+5+15E\F/ITD47NL7>9KFe7;JA63=PROgW8CP3@YQ9O<CD>-[IOBG~OGR<0C/]:,1X]\)=Q5GFCA@[D=D;3BI:@AGE<,BG2fB*WWN%?=F^Q&4<L+lVZh2KO/8,4*'J$C,7LR7033>;DEo7jb@6[_YJ'0.6D/7Xe:.J.<OGBCZy+7E>3~F?]A@baCCRlLJ^=0F@@L>86:8HC2=%1`P?NEK(@DT>8W;Fu8>?aN%C>GB8MSG7/>GV`;YKT--@cM=^kMK9UK/7:FB>?@FCQ5L-UcP('7A<d48][:DN<H<fE2<aF[PM.T3;P:<RC10A;LLE<FII6<GMB_'?43/:~H^P
@S1_36
AATCATTGGACGTCTGATGAACATCAGTCAGGCTATGATTATACCACTTTTCCCGGTTTATGATGAAAAAAACATTACTGACTATTGAAATTCGGCCACCAATGGATGCTGCATTGCCAGCGCGGGACAATAAAACGATTGCCCGACAAATGAACAAAAAGTGGAAATTTTGGTGGGGCCACATCCGGAACAGTATGTCTGGGTTTTAAATTGTTAAAAACACGCAAATCAAACGAAGCGGACCCGTACCCTTGAAATTATAAAGTACAAGTATTTCCACTAGTTGTTTGTAAGCGTACAGCCTGAAACCGTCTGGTCAGAATCTGACGAATTAGACAAAGTGGTGTCCACCAATAAGTAGTGGGAACCAATGAGGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAACCCAACGTTACTCTAAAGGTTCAAAGCCGAAGCTGTCAGAACGGTTTCTTGAAAATCAACTTTCGATCAGTGAAGGCGCTTCCCGATTATCTCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTACTCCTGGTT
+
OMNUPUOSF`[YYXH(L_ZO~HXgFtMpMzQZ5_~FFNuZ~DFUZ\V8;(F76~XLU6-b)DLi,L;4XcaT3g{`@BT7B}~HWUQ~[T]KpqBW,9]I{=~]~VM~r/2:\_A.Fe~_HJ<~&:UaDD;~>nX>NipHUY@(IN0^Ca=HsGFu@XH@ZP<q6QeTGZZ[/y\LIatI@3N7:R(I>6VoWPM_.B.8Y^f]GO;M~bo?kGF]V16gsLIP~o~]l*kOMH?hU5CDnpOK~R:RF~H?JNM32;e~uGKGLH<-M<F.0RM~iFRs)X7:mD?~L_m1g'KBIE*lOGuBW4~MKQG;x=Db>QJH~~Kf~mdHsf~6;RHPGG~OV0YA~~';?KQ>J~^8QO@9,tA>LVKQ[J+E=[R:HCETKROS@@[OLXWNQrJ\?k@x~~~<Y?EaOGFXWl?TeW3A~]_PEo~Q]rL[m5T@DV~P[F<Ex6u\M~~LJJ[^CV~]OJ7G?JUQ+U/]X~_S0WBPF~ZM3Hv3\pd>%VC@,Ua0yPNSM@kQTiaXbL5SP~W@p9:qaKhP`DCYhO~D_dQ-F)Zg<OH\O^~4pf[G~OT\fp3GH)GiPVolWBIhaa@~Ntd3[=KX\'G?U:C\;XPJB6~V
@S1_37
GGTCGATCTTGGCATGACACTGTCACCTGCAGATTATGCAGAACGTCTGGCGGCACTGACGCCAAAAATCTGGCCTTGATGGTGTGGTGTGTTCTGCTCAGGAAGCTGTGCGCTTAAACAGGTATTCGGTCAGGAGTTCAAACTGGTTACGCCGGGCATTCGTCCGCAGGGGAGTGAAGCTGGTGACCAGCGCCGCATTATGACGCCAGAACAGGCGTTGTCGGCTGGTGTTGATTATATGGTGATTGGTCGCCCGGAACGCAATCGGTAGATCCAGCGCAGACGCTGAAAGCGATCAACGCCTCTTTACAGCGGAGTGCATGATGAGTGTTCCAACAGCCGTCTGGTCTACTCAACGGAAACCGGACGTATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTGTGGTGCGTATTCAGCGTCAGACCAGGGACGTAAAGTAAGGGCGTTTGC
+
-7*+84JBBDI<&C:<Q:,2OB^NB=84RE:'?=B;FX(NB880$4/Q/H,@:A;?)H7=~E'(1C<;B&KH9D=:SBJA:;D7&,NA:E,R;.[-7V*<[Q4M@3G&L@.GfJ*?;<.8/G5,:GFFDJ104V?8079?N&69KOQIM?.&6:BEC9UMEB'U@,55:/7I0-D?n,7MC<:W9&/?Q,;AG]?L*8B==VI1@=E@@?V2>7DPML<5V9O18T';5C;5-2[EC1I3GFZ5@BCV~-3V=BC8?EH7OEA>P*F*5>K%G6IKW<H<+>:@.@SD52%C;-1KERQfW4>E?7(%HK=98:Y$Y:DG-2:?M@9@%H*Z&A0+;3+E@*,<^)<T[C1+MA.3D=I35:EJbOP:B>-F+F0*7A>5HENBJ>M%%04J?<.)M?`=?BEC9O3C$G<H]8Q6M57:Z*E'>8+9O*9<D++@]73=ADH*?D9Q[2J<5'=7:@D5/)F8
@S1_38
ATTGTCGTTGACAAGCAATTACATACCACCGCAGACAATTTTGGGCGATGGGAGATGTTACCGGCGGGCTGCAATTTACTTATATTTCACTGGATGATTACCGCATTGTGCGTGATGAGTTGCTGGGAGAAGCAGACGTAGTACTGATGATCGGAAAAATGTGCCTTATTCCGTATTCATGACACCGCCACTGTCCAGGGTTGGTATGACAGAAGAACAGGCCAGAGAGAGTGGTGCTGATATTCAGGTGGTGACATTGCCTGTAGCTGCAATTCCGCGTGCCAGAGTGATGAATGAACTCGTGGGGTATTAAAAGCGATTGTTGATAATAAAACCCAACGTATATTAGGGGCATCACTGCTGTGTGTTGACTCCCCACGAGATGATCAATATAGTGAAATGGTGATGGTGCCGGGCTGCCTTATAGCATATTACGCGATCAGATATTACT
+
b\/Oa\%SO{MU%JAj=4S;9G2PhO8Y.OSQ|V-[-a~AI;nJR7~M|AGdTJD9yKdZXG>S[~~^^Y~8gSA5I~C,<Wgab8uZBJGWMC|;AVV\BEifTeV~^V_w~RI_I~8HI>(pN~a_B4LQ7~0\dZJ@'99~J@]e@k<G.x?QR\~hOK2V88-yPLoQD^O]~~O=OJBBE>OoxNJ8WN_aVcIl~AHA~U~XA=SaUj'V-P>~^VeG5QhK,>C\<Y~p~yP@h4\J|K`ZZ~GID9M7I%QK?h86=e\rK?jA+QHZ\9GHg\Nhj~~@YNHU'?\>&J4KGXIH<caqW7~;gL~H6{Eb6[G7vd-W=k0ANLWY~IAT??_`H^7>GK~Mh.D^iG1_=k~ZDF/~LDRYA$JFL@QPHO~>BCX4G]hQRf~Sm~BD&PZ~PeE[,S>9dvF0w\:A9[P[?L~29@H:b`i'Rn[TKVK?ObCJ=9Z
@S1_39
CCATTGTGATTGGTATTTCGATGGCTGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACTTCATGCACGCCAGCCAGTTCCATCTGGGTAGTGAACGCCTATCAAATCGCCATTGTCATCTCCCTGCTCTCGTTTTCGTTTCTGGGCGATATGTTTGGCTATCGACGTATTTATAATATGCGGTCTGGTCGTTTTTCTGTTGTCTTCACTGTTCTGCGCCCTTTCTTGATTCGCTGAAATGCTCACCTTGCGCGTGTCATACAA
+
+ULK9GL6UX-?'=|8Q;64+\KF8;h>C4;]'$GHGIU@D:6\HE1@UKb]GHU4^3EP<6KL7:<RbDGSSQMA=77E[CAU2I'?Rc5B385>DXDR?BH7:L'm:GCD/<>G<N=B*Em61C_I>RRQ:Q>]WN82L/J4@+0.3BF6>EOC*KCQU<c11J?~@HBBM3ICF0GMG4c<+LSBN<9G%E.B7BS%B;C5SCK?GIBE3OVFT()GLIEL6wEPS>P:)HTW0XG-C.r'VTGK7pHbHD%4C]gK:NjK>2EU'3:Y899A@U3JSP
@S1_40
ACCATGCTTCTCAGAAAACGTCGCGCCGTCATCGGGTACGAAAGCGGCAGGTAGCGCGCTGCATGGTGATCGGGCGATAGAAGTTGGCATCGGCCCAGATATACACCACATGCGAGGCGATAAAGGCGATAAATAAGAATGCGGCCAGCGGGCGCGCGAAGCGCCGACGACGCTCAGGCTGCGCAGCTTTTGCCAGCTCCACGTCGCAAACACCAGTTCAAGCAATAAAATAACCGGCACGCTGATGAACATCAGCTGCCAGTCGCGCGCCATCTCATTTTCGTCTGGGTTGAACCAGTTGCCAGACGATGGGATTAAGATGGAGATGGAAACGAGTAAGACTTCGCTATCGATCAGTAATAGCGTCATTCCCGCCGTTCCAGAATGACGGACAAAAACCTCATCAGCCTCTGGAGCCGACGATAAAGTCAGCGGGAAGAGGATCAGCAAGTAGGTGGCGAACACCAGGAAGCTGAAATGGCCGATAATGCTTACGTAGGAATAAATGCGACCAGCAAGCGTTGTCGGCAGTCGGCGAAAACAGGTAACGGCGCCAATGACGAGCGAAAGCAGAATATT
+
NTQViUAQ~mFRUK4K0noPIg1TAJDi6`9DFI}s]sJ[_`~0<bN?WGM`rQEnYF[b4Q2KY~EHrLdF>MI4@s,T~OFS`XKJ]i<eH~~`~~kSKWVG5)K0W=XD[~nKF%RbRLSXJ@I5|@YGTCJI(SLXa5~LdPTkA:VeUuK^khibc>jG>Aa?Q~SC_PLP-+4CtJe>,@~qcaGR[=Wr;H5JDY\.u:CXt4YO?L\B[Gm=k~_P8GJ&M?KNqjQO\Q:TVe5l~PiHrJR^FCA=HG=iSFE<sRYT5g<KF~%DPRZI~~jC~3MELHp(KwxEMSxC5fKKPKL,~i:Xc~~_c7c~?XZHCSJ_:+_~j;6GUR6D6~~UYU/;Li5H>bMN1n~~tZtLj$d:BV;HTj[~:_8EC?[>]o[N^FJV^*cR*SK'vD6=9d;'QCEQ?^`XT:9-NBH?D;N-LW/G~:QeYJf=JkLGS=$qFnzQ8DNKLZMvE@A~5OaaWCY.85IJ&7C1~>U6OeAZNKSdHQNM`@?IAU:4\BO\Idb3]4v?rorGC<pH\GkMDcSRH]W2\nOfH~q31O'ZHV,HdV`>~TI~H~QMHuB3Maqk_N|P~~=
@S1_41
TATCCCTGCCAGCTCTGTTGCAGTAAATCCACCACTTGCGAACATTCTTCATCAACTGTCACACTGGCTCGCGATGGCAGAAAAGCTCCTGGCTGAACAGCAACAGGCATCGTATTGTTGCTCCTCCATGTTGTTCCCGCAACCAGCGTAATACCACCGGCGAGGATGGACTGGCCGTGTGATTACGCTCAGTAATACGTTCGTGCACCTGTCGGTAAAAGGAAGTACAGAATGCATGAATCTGTTGCCCGTTGATATCTTCCTTCTGCCGAATGGAGTGTGAAGTAAAATGCCAGCAAATGCGGCCAGTGGTCCACGCTGCTGAATAAAACGCCGGATGTCTCCCGCTCTGAAATTAATGCTTCGGTTATTTGCACGAAATGTTCCTTTTCAAACCCTGTTGAATTTTGTTCAGCCGGTGCAACACACGGGAAGGTGCGCATCAACACCGGTGTAATGCCAG
+
b~;~i_t~~psn^i^[~I~l&~gnUs~~E~~mm~02Dv~~~G`Zv~eE~Mxf~E/~i~~t}r~~Y~,bZmU={dL=OuM{~sGji~h~~KHY~;X;~ASBajJ~~C}~~~]VRh~~aUh8Ov]~fd~PX3@gY/Y3E~~tw~~~[{^~~w~~7~wUGNUO~\|?H~~2~^vKQj~pKMAxs~Zap~|g~~|~~\~~Cx~w._~R~tq~p{g~YpEyX~F~V~~D~d>~@~b~Q~~~^f~~G~xPl~~tY~srmV~Q~m,~IOe^~[T[~~:~~g~*~~tYkO}<hJ;~~=o~8-~.\)\~lMw~yn&yA_~t^bdw\Ut6[Ky^La_XMkQ~~~~FL~~T~VwR~~~8FS~RaV_]e~cw<y[mV4yejNh]g~^~k~~aR`xb{~nE[~laa~~}~]~KoJX1~{~[{jk~~~Y[~~Q>u~S/sM~Tn^O~lj~GKaf~~~jp~t~OSFU~~kxRgEV~hg{
@S1_42
AAGTCATTATCTCGACCGGCTCAAAACGTTGCAGGATCAGCTCTACAGCCGCGATTTGCCAACAGTCTCAAAGGCATTGAAATATACGGGCAACGTGGCGCTGCTGAAAGGGCGCTCAAACTACCTCTGCCTCGAGCGTCTCGAACAGCAGGCGCTGGCGGGGGGCGATCTGCCGGTACAAATCTTAAGCGATGTGATCCTCTGCGCTCCTGGTCTAATCAAACAGTCGATGTGATATCAGCACCTGCGTCAGCTGGCGGAAGATTCACAGGCGTGCCGCTGGTCACCAGCACCAACGACAACTGTCTGGCAGCACTGCCCGATGTATAAAGATTGCTTTGTGGTCAAAGCACGTAAAAAAGCGATGACGCCGATGTGGTGGTGTAAACCATCATCTCTTTCTGGCGGATATGGTGGTTAAAGAGAGTGGATTTGGCGAACTATCCCGGAAGCGGACGTCATGATCTTCGACGAAGCCCACCAGCTACCGGACATTGCCAGCCAGTATTTTGGTCAGTCAC
+
p~chf~XXt~EOJre~FIg~iz~8~Kw~I~Yhk~~~Y79~~~F~Xpcbi|J~[~~3~d~~AEU_~/GK;L~w~~HLZ[^r0k\GQ~I~I~yR~~t~~jv~ehK[RYV[cy~Q~~\~~U~~~e~~HWk~~~_SLn]NwwX~<(:~~`~]zV7cj~Ux,oUrgc~b~~uK^~~O~9~XPfdy~h@SO\zP|~~HF`[y]~~jbq~Da~Mu~uU|BG~>gGV~t~~j/KJ^~~yXY]L~~\Z~~^O~V|~~q~dMrUfsdu~ZF``dlp~\~5~da?<}l~OCix<~~leF~~P~HtT{~L~xO{@_kH~8{~~JR~+~VR7~O4~Fw~~]~\~~1~~m~~]c[;rq~^i~tY~r[`h~~9C~`~ib~L~U~~~7~;_~bzs~~PJ>_xr^f~E~[_9~onB3a~<Cvet~~~u~Mn}\~V~c~tV>~C~Yy~[~oL~L`l~VV^~S~qrzvX@]~HOz,C~y~~TN~MHOi~g~UH/~htaD|US]Ld~MYYt~K~H~~V~ZLN~PZ{~~8]~iv~~~^x~}~
@S1_43
TTCATGGCGAAACTCTTCTTTGACGCGGTTAAAGCCGTTACCTTCCCGACCGAACATGTCTTTCTCGTCCAGTTCCACGTCGTCAAAGGTGTTTCACAGCAGCTATCCATACGCAGACCGAGCTTTTCAAGTTTGGTCACTTTGATGCCCGGTTGCTCATATCAACAAACCATTCGGTGTAGACAGGTTTTGTTCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTCTCAGGCTACCCACGTCGGAGCCCGCGCCCGGTTCGGTAATCGCTGAGTTCCACATCTGCTTACCGGTGCCGCGGAAAGCCATAATCTTGTCGATCTGCTCTTGTGTGCCTTCGCGCGGAAGGTGTTGA
+
;?<G8%)F;(i=\B+OHJPS@WHRPD?OR7<0yI-7~0QIC/=?G?CFA:?V3>':8?**v>Dk=e5=@=%^A=<>0TgEBLO{@2HIEK+Y?FUOY?B;-T7DD[9%.7FF:K\KUD=NF@Hl=T-87\E<M06:&A:A)7>J9:>A4-6MU5L6(1Q9*K_PRB?5;*IKH>=YIM=SR\\J/G71.&N2+&:WCK?1.?SLO5bO]Ib-ZU/~RJB[KE)NaJiP=L]Q0MU8^2=51;H'BL>;?5E@/GD)9TSjEM/&BgGN.d_FGEG-H<M=V:Pj7I%TBS2>E9?>EyB%`?FX;D;96(H+JO'XO(+86EH04=VM=<.H.KCNF3%15z5U.E-VdCA3+?H7OB;/R?.9@a~%.=BHKJSP8[~5NPKR6;>k2K@;.WEYQEZ89MWe?K.vd-CK76U?W7>=:3J>'7941C??FH=oK@
@S1_44
CGTTCTTGAAACGTTGCCTAATACCATGTTCCGCGTAGAGTTAGAAAACGGTCACGTGGTTACTGCACACATCTCGGTAAAATGCGCAAAAACTACATCCGCATCCTGACGGGCGACAAAGTGACTGTTGAACTGACCCCGTACGACCTGAGCAAAGGCCGCATTGTCTTCCGTAGTCGCTGATTGTTTACGCCTGATGGCGAAGAGAAAGAACGAGTAAAAGGTCGGTTTAACCGGCCTTTTTATTTTGTGTATGTATGAAGTACTTTGGAAGTATAAGTCCGTAATTGTCTCGATTAGATATACTGCACAACTTGTTTACAGTATGAGCAAACAATAATTATCATTAAAATCTTCTTGCCGTTTTACTCCAACTCCCTATAGTAGCGCCCGTTGCCACCCATGAGGTCAGGCGACAAAACAATTTGGTGAGGTGTCCGAGTGGCTG
+
L~z~]~~~~O=~k~Jx~R+~W7~;UxMin~eiY~N|wHXZFIZx~T;~U~snzn_~~oNWAb~`X~~~{~1~>FO~IUuM~O~mlERTecnY~C~G~[~kUv?D~V~{YS~~Q]j~T~(~JZ-~ci~Utjoy~wlc}KB~b~~w@2J[~~~~Tsf}~H~gb;~Z}c~Isv~([PbcRpm~j\em~}Q~~~<R~~[R_~^~h~~~:~/WWn:~~VZt~ZNo6Tp~~~5]~LC+~vt~ou~~~~a~)jP~taXxcxQal3m<~b=~6{t^<WP~-`s/~~mV~t~NS~sn~~t~ZeR]~~~~~~~~Em~~FR=~u~?~deLI^o~~+<~||[vp;[T~~~~~~pzpCkNm~^}[~W3~Fw`p~~~3GK~~Dgo<~~a~jsdg~~~|~tK?-ob~\Z~Sil1^~qPr[ui~P~A~_{b[9qM;~t5T~rUNDW\~xnR~K~sIPf~rFW~K
@S1_45
GCTGCTGCAACGGCAATGAAGAAGTCCGCGAGCGCTGGCAGAACAAATTCGCTATCTGCTGGTGGATGAGTATCAGGACACCAACACCAGCCAGTATGACTGGTGAAACTGCTGGTGGGCAGCCGCGCGCGCTTTACCGTGGTGGGCGATCACACCAGTCGATCTACTCCTCGGCGCGGCGCACGTCCACAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTACCGCTCTTCCGGACGTATTTGAAGCGGCGACATCCTGATCGCCAATAACCCGCACGTTTTGAGAAGCGTCTGTTCTCCGAACTGGGTTACGGCACAGAGCTTAAAGTTTTAAGCGCAATAACGAAGAACATGAAGCCGAGCGCGTCACTGGTGAACTGATTGTGCATCACTTCGTCAATAAAACGCAGTACCAAAGATTACGC
+
CBLSCF\=1+w'BWLAg+fN8BNB^A-U@UQ9KC@5@=[ENXb8.%K*@$QITZB/<Ed/N.>@G4s?C7;9/8UEGEg'[/JM~CSK*1237Wa4(]FZ283GB%C.\AA3FBY]uLG>5MD?dRGpMCW7N>4FMK&ICBQ+j)p;/^';$E+d>I^AC2&HDE597E8,)?1=@A%Y>(5>b8<J8G/0NBMH':7GTBJ772c$GdZ<v@L:'>aH=?M@XR*8,H59.UUI=PJcM[:,<<=L-H<O'?68EGCt6(8IY-;FW<De72>[T+f9K:'+'F;FD3E-5Q.@7?~A+WNI>0YEDURFB5HB0;+zAj,~/3O<[01k}YfL=U9YK?QCG@}+M?*D>0XBH~3D0;UA4Q3X~?O'4]DP=C5@98;HL4A<4G7I\+.@69;E&@FEKA<'<VQF//F3H&C3H,PY1XJKB<GU.4?PH+3;_gY>+AEKB?TAAHKbV
@S1_46
GTTCAAACGATTCGGCAATCACCACACGAATTCCAAGCAGACGAGGACCTTTTGCCGCCCCAGTCACGGCTTGAGCCTGATCCATCTCTTTCCCGGCAATCACCGCCAGCGGGTTTGTTCCTGCTTATAGCGCATGCAGCATCATAAATAAGACTACGTCGCTGTAGGTAAATGCCCGCGTCATCCCCCCTTCAACGCCAGGCACCATTTCATTACGGATGCGAATATTGGCGAAGGTGCCGCGCATCATCACTTCATGGTTACCACGCCGCGAACCGTAGGAGTTAAAGTCTTTTCGCTCAACACCCCGACCTTTAGATATCGACCCGCTGGGCTGTCGGGCTTAATACTGCCCGCCGGAGAGATATGGTCAGTGGTGACTGAATCCCCCAGATTGCG
+
?~P;-mBV]_)lHPxaC-bj~Pbsd2^L~`K=^~2NP0h@PReUd\G3MjyL2Z/mMc(KPLE~77;W<\TZBHB04FmR<b]ALb6WBkbO(4=8>3N5d1bb;bR~6J@Cs~BFK4ZJ~Ly~QhdLv~R[0-<~f^xyk9z^etb~~LGWr~S8f4D\3S6mU~eJLK-CRZ^3SO`BY5VBe=6U~J)2\8XEkLLCT>R9p~~;?[:pOalDZ~VY5WLeN5hEB~Ek<p\cpXX4.eZBCQR~>sE)@OQ]UG`TF1K@Y8'ANY.A<LPL[d7uZLy{~LGAPhjTrBgA6i?ENBSIKfk6U~%B7WxbfA+E3TvZSKXYBp\MmBmC1\IYH6XNMR~BQ$DVT}&:GYQVA@f6?Y5~2>H;E+GNDFaj/c;W\<Ocj`74\ywxC$w
@S1_47
GACGAGATAATAATGATAGCTAAGTCATGGAGTTACCATGTCTGCCAAACATCCGGTCATTGCGGTAACAGGATCCAGCGGCGCGGGGACCACCACCACCAGCCTCGAATTTCGTAAATATTCGCGAGTTAAATCTGCATGCAGCTGAGGTGGAAGGCGACAGTTTTCACCGTCACACCCGCCCGGAAAGGACATGGCGATCCGCAAAGCGCGCGACCCGGGCGGCATATCAGCTACTT
+
,@N'DJ-4?0/K2SF248)+&@$AH?4@2637U)2D&9.9C/7J/20<<,96J2.;';3,D86C;@6516NH?.DP2G4W'?6A(64*'9(=C87-0K;:4:0GB)E+$/IDA*;D:B@52C(+232<(@[/)/+=+%;J'89C=,=%O-6'&9V4=)BAE:C?;Q59A%6;9%6SPH$>F.9I99(.6EA(-:CC9.3*/;@:5P:4F3F@356G@8G-,=03&)-;):84,/P3-2@
@S1_48
TACGCCATCTGCCCATGCCGCGTATGACCAACACCTATATGCTGCCGGGTAAATCGACCCCGCAGGAAATTATTGAACCGTTGAGTACGGATCTATGCACCGAACTTTGGTGGCGGTCAGGTGGATATTACATCCGGCAAATTCGTTTTCTCCACTTCAGAAGCGTATCTGATTGAAAACGGTAAAGTAACGAAGCCGGTGAAAGGCCGACGTTGATTGTTCCGGTATCGAACCATGCAGCAGATTTCGATGGTTGGCAACGACCTGAAACTGGATAACGGCGTGGGTGTCT
+
Mm<CZ]7Wb7?=]?ZP4NuT@UFrO3T~FP=d4HdNfwkS_bNL~:[fGTITv^=JeNFl]AWeWK$K.R]c/>~.3XkK~@(lZ=~=ZE-ICZwzgW1n=dG@\D~c~R>sP?L=9KIQMKX`gBHWsL>e@S`~TMKQ)X9QTTLL_R~z~FYOU.jN>.~KE`4y>P;~rD=MUXy1=U~o~G3Q7z`EZ_N^>SG8fP1[QBqmVOzP7V6/~=E4h/J?PV~]<Cj\eV7.U~v~OgLFKC67<J>~<F?[~p8j;ZBZDH]V4VRD:%WD~_8<nE<-H6^E~mpm
@S1_49
GCACTGGCAAAAGAAAAATCACTCGGCTTTGGCGTAAAACTGACTAACACTCTCGGCACCATCAACAATAAAGGCGCACTGCCTGGTGAAGAGATGTATATGTCAGGCCGTGCGCTGTTCCCGCTCTCCATCAATGTTGCAGCAGTTCTCTCTCGCGCCTTTGACGGCAAACTGCCCATTTCTATTCCGGTGGTGCCAGTCAGCTGACTATCCGCGATATTTTTGATACAGGTATTCGCCCTATTACTATGGCAACCGACCTGCTGAAACCTGGCGGCTATTTGCGCTTAAGTGCCTGCATGCGCAGCTGGAAGGCTCCGACGCCTGGGGACTTGACCATGTTGACGTCGAACGACTGAACAGACTGGCAGCAGATGCGTTAACCATGGAATACACCCAGAAACACTGGAAGCCAGAAGAGCGTATTGAAGTGGCAGAAGACCTGCCGCTGACCGATTGCTACGTTGCCCCCTGTGTTACTGCCTGCGCTTCAAGCAAGATATTCCGGAATACATCCGTCTGCTTGGCGA
+
~wGAi~~I`f~y~~V~~w~;~yg~W^W~glQP~\XO2T\N~U~S~ED~l?~Z~,>~_]^w~^~s~~~jMH~}LZ~Ld~~~yx~Iy~~~T?d~d<k~~YP~Q~``QB[d|~KZx~g<~Lx~3@~S~\K|z^`y<~8<{JU[JPdp~~ay~:p{~a~~m~U~~{u<fd~~sK1l^f~\JV~/Zpf*~]~W~~4~lx~~?~{dy}~2IuJW~J@~iY~3|rAzeEb~~Sku~M;sx~`~Mn~<g~~~4~ohLxHumo^>q~}X~j~i@=<T`~Cxa~`cj~}{]s<~JP~j~w~~~fR~lWT~~G[J8jqmQT~q~9f~6N;~~~ykYzku~nYg{yvh~~3I+~~~~~bxHgo~B~Taw~1\ADs~mPSfN9sN~Y~dT0@`TbH\`K~3~nJ~y~oM~qx~`/~&Z~d]~Xm~~dGCtz~YO~EwqdrC~(4M0~MEc`T~g~~M~~;tj~~h~r~H4SRsT8o8~kJL~MF_~~[~h_G~[~R~bF~P^9~`~]dt~^oo[}~?X9~oc~YnnoQ~e4~s?m~~~~YnF~
@S1_50
CCGCAACAAATCATCATCCCCGCCACCCTGTCCTGATCGTTTCCTGAACGATAAATTGTGATCTTCGCTGCGTTTCGGGAACGTTCCCGTTTTTAAATTTTTCCGCGCAATATATTCTGCAGTAACCAAAATGTCATCTGCCATGGGGCTTATGATGAGCAAAATAAACCAAACGGATATCGATCGGTTGATTGAACTGGTCGGCGGGCGCGGCAATATTGCGACGGTGAGCCACTGTATTACTCGCCTGCGCTTTGTCCTC
+
[/?6-L$@0F*1,JC:.%=9JIG@2'CB+5N@U;:)5Q.WB2.G&ICD7.'.;I3B8:5<D/?-+UE8LK6=';G@GS4@(JF=A=B=M;T(,c01S:?6296G7'8@=@/>P:>>9D^4,;JF:>QLO\-,LSM/=E3XIQnE6>ECE2;7.G(?4=Q.X?GI=-<WK2;.-;LS<@,/6>~;I(\&&:DbTT6R(59:=I(A2O>CZB74C7C<O/bR?C;f,3;/=I(=@++7>.=<5JET.OO?(:<,(9A.,&JAJ9
@S1_51
TATGGAATCAGGTGAACGAGAGCCATAGCCGCGCATCCGATATCTGGCGCGAAGTGCCTCGCTGTTTCGCCCACCCAGCCGGTTACCAGTACGGAAGCCATCAGGCGTTTATGCGGGTACCACGGGGAGCCAATACTCCGGTCCGTGGGAGCATCGCTGACGCCCTATATGATTGACCCCATTAATACATTATCAGCCCGTGAATATGACG
+
~`v~N\Wn~~e~aOPz~crO~~lhiir]/~~~~Z}A|~aN~w)~uPbtb~q`kD~+^RI_~>Kv`vh~r{4JX5F~2mkdX~~t~gtF~~VdtQ~~~Z~c~xq=|h~g.U~BHk~~~?'ht<~OVY~Fb~ZaR}g}JQJ~i=7v]jVF]<_~F~~aK~Xqk`~~?+b-Rq~~b~E~;L{bR8^\~Zl~Ssal~~U~~~~~6reeHp~Mkys
@S1_52
GTGCGGACTCTTTTCCTTCAGCCCAGGCGGCAAGGTATAAGCAACTGTCTATTGCTGTGCGTCGACCAACACCGTACAGGCACCACATTCACCCACGCAGCACCCTTGTTTGACACTTAGCAGTCCTTGTTCGCGGAGTAATTCCGAGAGCGGCGTGCCTGGTGCGGCGTGAAGCTGAAAAGCATCCCGTTAATGGTGCATTCGATGGTAATTGTCTCGCTGTGATTCATTGCAATTTCGCCCCGCCGCGGCGACGGCTTCGCTAATCACTTTTTTGGTCATCGTCTGGATGGATGCAGACGAAACTCTTTACTGGCCCGCCATGAAGAACGCGGGGCGACATCTTGCAGGACAGATTCGCTGATAGCTTCCAGCGTTTGCAGGTTTAATGGCGCATTTTGTGCAGTCTGTTCGGCATGTTGGCAGCGAATCGGCGTTGGCGCGGCAACACCAAATGCCAGCGTAATTCGCTGAAATTGCCGTTATCCAGTCGGCAATGTGCGG
+
`v0~~~FRi.SFG~G~\U.^/^DOM?k`06Wf^[bKFi~spB@~~TsHzX6~5J=RV`)ZSH='1~L8PK'6J@1IRYNM,T:9~/JEfK]4Pz6TURKj~L~6I^>Y7[8:C~C~.J+SR`Y2HaH~Dfh~~N62?,_F^T=^S=]FUMw;>R@TEVCFJhF4D:;P=vRy>`GcYd7B@_KLDH`F~*I7k^>9q4Hd]XJy7bJcRA/e~=~%S\0CLLIC<E:bJ@Rkr~`~Mrc(8Rfi_NiE<UTV/\V~(NK9L\~EZL-8FhnM3IChojl.L:I?l^qT?E^X'K[Jq^A>B7I1OIsH@_9IVAFM~>.vPNBAx~XdJV]I^5M~N2.LQvj9:;U7HH_Ul&lN[?Bhi~?CdI~C<]]]VBla:<UPAFk6/JT_VRR<AN;-U7,cjMN<`0Xu?A9=C[DF5Tf^oGU7Sc:;Vx~LHKF8>~_:~TF~CW)H~hgguKXM{PGQKD\gL,YX_Ie[[9X~NIG;>;[hDF%?oG`DXL64>NM~TAWC
@S1_53
TCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCACCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGAGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCTGAAGATAGCCGGAAGGTGGTGTTAACGATCTGAAAAATATTAATTTAACGGCACAGGATGTGGTGGTTGGCATTGCTGCCAGCGGTCGCACGCCGTATGTGATTGCCGGACTGGAATACGCACGCCAGCTCGGCTGCCGCACAGTGGGAATTTCCTGTAATCCGGGGAGTGCCGTTTCCACCACCGCCGAGTTTGCCATTACACCGATTGTAGGTGCCGAAGTGGTCACTGGTTCTTCGCGAATGAAACAGGCACAGCGCAGAAACTGGTGCTCAATATGCTTTCCACC
+
wTYg}]D~i~mH5w~~~7~~eWVpPR}`-~Yb~`~u~~s2z~~~nzlh~IX~P\hc]~s]~~~~YeL~Qnxzfq\~-yT~q[a~e~Q~~~Kfj~/rLMP`jw9~OLk~sn~L~~~D~~~^n~~~qvb~~`~X3~7'~Z~W~fRl[~wB~mSS`=?~~UVUzO[f~Jfxhe~G~~y1~VDvsF~~N~jy~~~x~~Cg~[~P~r[hY~iQ:_~xjhLfNe~LQqr~K~~F~~EsSe?oQ\~9~_fQ~xf~B].B~tv~=u~~i~S~[B>[dv^J*~JyguU\~Vdez;Z~eB^~~tf@gYM~~p~~L~Hy_a~~}O][7f~hZ~O?]e~~~F~~f]awFZ<W~~N`~Zjv~ED~AA~Qm|<?pq~0~~c:6T[~Ak~|~dW`ZL=NT~bqggx~9Mt~~3~~WG~IcusU~~dJ~j\BXmdn+~\~7~
@S1_54
AGCGAAAATGATCGCCATCAATCTCTACAGGAACGTTGGCCTGGAGCGATTTACTGCACCGCAAAACCCGTTTGAAATGCTGACGAACTCTGGAGACTCAGTTGGCCAGTGCCTACTATAAGTGCGCATTGGTGGTGATATGGCGTTCTTCAAGGGGATGATGCGCCTGTTAATTGAGGCGCGATGATGCTGCAAGCGCCGCAGGTCGCCCTCATTGTGGATGACGAATTTATTCAAACGCATACCGTCGGCTTTGACGAGCTACGCCGTGACGTTTCTCAATTCCGAGTGGAAAGATATCGAACGTATTTCTGAATTAAGTCAGACTCAAATCGCCGAACTGGCTGATGCATATGCCGCTGCCGAAACGAGACCAATTATCTTTACGGAATGGGGAATCCTCAGCACGAACATGGTACCCAGAACGTACAGGCAACTGGTCAATTTGCTGTTGATGAAAGGGTAACATTGGCAAGCCCTGGTGCGGGTAATCTGCCCACTGACGTGGTCACTCTAATGGTACAGGGCGACCGAACCGTCGGTATCACCGAGAAACGTCTGCAGAGTTTCTGGCTCCGCCTGGGTGAGCGCTATGCTTCACCCCACCTCATGCACCTGGACATGCTGCAATTGCCGCATGCAGCAATATGTACGGGGCAGGC
+
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
@S1_55
TGAAGCGTGGGCCAGTTATCCTGTCCTCAAGCGTTACCAATGCGGCGCATGGCGGATAACTTCATTATGCAAGTGGTATGGATCTGTTTTATGCCGGATTCAGTAATAATCTGCCGCCGCTGCGTTTTGTGCGTAATCTCGGGTTAATGGCGGGCAGAGCGTGCTGGCGTGTTGAAACGTCAGGCGCTGAAATATGCGTTAGGGTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTGGTCGGATAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAAGCAAAAAGTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGCGCACTTACGATGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGGAATGCCGGGAATCAGAATCCGGTGCTTACGCATTGGCGATACCCAAAAATTGGTTTTCGAATTTGCCGAACGATT
+
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
@S1_56
GCCAGTCTGGCGACCGCTGGCGCATTAACCGGCCACGATGTCAACCGTTTTACTGCCCGCGATGTATTTAATGGGCAACCCGGTGCAAAATGTCGGTCGCTGCCTGGGGACAGCCGAAGTGAATGCCAAATATTACCCGCATATCATTACGGTCTGCGAGATTAACGCATTGCTGTCGATCTGGTTATGCAGCTATTGTTTAACAAGAGTTAGCCATGATTGATTATACCGCACCGGTTTTACCCTGCTGCAGGGAGCGCATTTGTATGCGCGGAAGATCGGGGAATTTGCGTGTCCTCGTCGCTACGGCAAAATTATCGCCGTTGCCAGTAATATCCCTCCTGACATTGTACCGGACTGCACGGTTGTCGATCTCAGCGGGCAGATCCTCTGCCCAGGTTTTATTGATCAACACGTCCATTTGATTGGCGGTGGCGGCGAAGCAGGTCCCACGACGCGCACGCCGGAAGTGGCGTTAAGTCGTCTGACGGAAGCAGGCGTCACGTCAGTGGTTGGTCTGCTGGGCACCGACTCTATCTCTCGCCACCCGGAATCCCTGCTCGCCAAGACCCGTGCGCTCAATGAAGAAGGCATCAGCGCCTGGATGCTGACCGGCGCTTATCATGTCCCTCCCGCCTATTACGGGTTCCGTGGAAAAAGACGTGGCGATTATCGATCGCGTGATTGGCGTGAAATGCGCCATCTCTGATCACCGTTCTGCCCACCGGACGTTTATCACCTGGCTAATATGGCGCGGAATCCCGCGTTGGCGGTTTGCCGGCGGTAAACCTGGCGTCACCGTGTTCCACATGGGCGACAGCAAAAAGGCGTTACAGCCTGTCTATGACCTGCTGGAAAACTGCGATGTGCCGAATAGCAAGTTGCTGCCGACCCACGTTAACCGCAACGTTCCGTTGTTTGAGCAGGCGCTGGAGTTCGCGCGCAAAGGCGGCACCATCGATATCACCAGCAGCATTGCGAACCAGTCGCCCCTGCCGAAGGTATTG
+
KDfj9/_XZiO9@~~L~~>a8l'W[HjC4's@E[e<MAQ94-C,$~N~zIJaAKIYP@~E~hR~@Gr[UJR[Lh^;M}hIE@:CHQ~VNU~L9OLHkFc<`ET=o*GF~<L~9T~Pl~8FA0e6B@>jD~%-)T~UU+~B~5A1[ADAu9TnzH~=Fr)Gn_6U.0>XfoX_~vPHnQVNZ>FTD*NHx?]N~i4^UD5J;_okG6>?WiJD,`V0O5KJE:s&[~LD~RKnD'\Y7yU`M'0>NZB~N\5Pk~QQZ\RYB[AB\~XhT~S,~WA<*@pO~~,NZC`G~C_A~~A[XtO?me~RK~LL<EZ6C]UY~0']G`Z.^|LHgZEIN%~W~H4jJNYZ>~Fz*2FHh*9B~TGMBHn_HOH-U<o$H@IS>M>@QRE2DM/~-7:*N^NT@mVi`>i7L@JY[FV~U~(u61So<]sIKH~H~E~JPa@[\X17\Z0DFdz:SN)M=xnF~R^YoH168DPRZTYH~LI+@D<fd>C\imaQJ>>$S~iJ&F~IXGNGepH_<BB[=AH)6mC@/>@V=d-y8^DO3dkTY~FS}DA7RFmY>8xAFoU@YG:OeL~q~R=W>@=9Q:A5O6NJ~IH&~~@G.6SkRSK@lVn0Sb=6W;>8BJQ~d|~NVyRH(8?DJHQB~6.Rq@IPJDGI\VF>A'\p|~A~4<~ORNNATQQ<NyJV?b'W62lGfB@^?=H,HEQ|f`u6$KCNF[6B<iw%w`H\'E:~PP~USAA4%9=%S=OVUEtO:PPbBq=~=F~KTY,oy~~W9oWK0l.Z;~<+L[PKC\:NahV/NHyIHo+P^I~O@~<7XGmgaH~-27PR~mU9@OAU5~7QHb/FM@;iD(G/I.5<;F^h=EZJQ~(W~l<*F@Gf<PGMA]PG`VAW~~<8~lBQOCuKldL<)P\y`bH~NwF~@DDwB=,~-DAQD9Zn~laZH<T7~Zj:DugQ>7L=D><1?KE?C^4~SSE~_wcJDVRUOHoK>EV??d&K~FH~.=pV`=C>h0V8I<LVAE.MVYZl<J%h^IaOSGi-Q6A
@S1_57
CCTGACGTTTTCCTTTTAATCCGTTCGTTATAAGCGCTGATAGTTCTTGCGCTTTTCGTAGGACTAAATGATAATGCCCGACACCAGTAATCGTTATTGAGTAAAAACTTTGCATATCCGCCGGCCAGGAGGGGATATCTTTCGCGCCAATGTCCCCTTGCTGGGTTTGTGGAACCTCGATGCCTTTTTTCTGATACCAGTGCAAATAAATGGCGATTTTATTGCCGGTAATGCTCAGCTGTTTTTTCCGGCATGCTATTGAGCACAATATGCATATTCTTGCCCAGTCCTAAATGTTCTGGCTCGAGGATTTCCGATGCCCATAAAATGATTGTCATGTCCGGCGTAAATGCCGCCACCTTTTTA
+
:02-&+//.?3-689)1$K-;@&+*3:F,.:';-0*A*5,03$(+9-((6:,B>3)0.1(',3+H%1@413'%3*67@:)A31=0//,(+9*?-0>8,(-:7/)5%<-,E232$:./)O2/9'-0A3)+82.:,3068(,76=+%5F;)F75&;-28+7-G37:*+3?$83&:/-;',L,57+7=A*4)+,1)J5/4*6HF*&968A'.A.%G"'<A-90B&F(%436*352;75<:3B)<6*;%,"-E9:@<'.*8C>,>>;7A:>7-)>2=07+'83&1.,617@3$(=+%%B,;)$2-+&3%(:(=.278*.3@,(,0.2<.;(2-1&6'1*(5%4<9(31-C'444*&E'+7A.++*6,,12
@S1_58
GCCCCATTTATCTTCGGTTTCGCCAGTGAAGAGGCCGAGAAGGCTTGCTGAATGGTTTGGTAACCGGGCCACAACGGCCTTCGCCAACCTGAATACCATCTACACTGCGCACTGGGTGATTTCGCCGCAGTACCGGACATAACACTTCATCCGCCAGGTACGGGATTCGCGCGACAGAACCTGCTCACGCACTTCAATTCCCAGCTCTTTGCCAGTTTGATGATGGCATCACGGGTAATACCCGGCAGCGCGGAGGAGGTGAACGGTGGGGTGAACAGCACACCATCTTTCACTTCAAACAGGTTTTCGCCTGCGCCTTCAGAGATATAACCGTTCCATCAGCGCGATACCTTCCTGATAACCGTGGCGGCGCGCTTCGCTACCCACCGCAGGGAAGAGAGATAGTTACCACCGGCTTTTGCCGCGGTTGGGATGTGTTTGGTGCTGCGCGGTTCCAGGAGGAAACCATCGCATCGATCCCCTGCTCCAGCGCTTCTGGCCCAGATACGCTCCCCACGGGA
+
~i/w~M}UGm~~/~oUC~j~B[pPK~~0L~J~i~_8G<Y4^~~_~Yyp~~T~5s~~mw~hvIQ~~_~~Q2~s~n~f~L~a~~V~bG~~m~O~~P~zs~c~pRMo~~~aCs~~O~z`~mFYLDS~Y~`|uthM~dk`^@qSeK~y2y8~~~C~9FyG~~r]c~Z9W~Py~~|]~{~~Y~mUnaMrltiic~wx~~f~~|bfR@t~~_~~~-~mb~~~dL~x5v<~pkiF~}rO~~JW\w~[x~y~sno~~nQl~VTkqlxmP~k~~{4X>~b~f<m~_~b~OxbI~edU~~qM~B~~m~~td>Y|~vjWV~LS[rL27uW~fx~Y~g~UOn~bu~AX\^r`Wmx`~~b~OgjzEU~~~a~~~k~[S~w]FP~MkMqb~~G~fbvq|INMn?zisot~YROdQ~u~~NJ|~<xag9~~~~~k5m~a~`SMaP`v~~H~~=Y~F~Ds~xWksJ5a~s~o~~jL6|q~e~uO~~~~y~UNbZ~.hkN~F~V~~~~webu}G~~}~~]Fo`B~~~~PC~J~~OzZ~
@S1_59
TGCTGGAAGGGCTGGGATTTGGTGAGGTTTCGTGCGCACCGCTTTGTTTCGTCTTAATAAAGAAGGCTGGCTGGATGTTTCCCGCATCGGGCGACGCAGTTTCTATAGCCTCAGTGATAAAGGCTTGCGCCTGACGCGACGGGCAGAAAGTAAATTTATCGCGCAGAGCAACCTGCATGGGATGGTAAATGGCTCCTGTTGCTCTCGGAAGGTTTAGATAAATCAACG
+
TNA>]X~HRMUDM|?GXvUJ~C~`ggP<~=C@YQK5yJ=<UdM1KJ93+_N~_<^R~~KWp^pQ~*WsKQ1a.AQMYZRJJaIo~iJ~PSSIC;XB<~oVP~4SvW.CDU[LGeDDFK~n~@A$IuBSrlu8c~\[VM~W0He9;5:OAgGA-F~K~@\RfUZTDH~WiYBU,1MyrFJ8:N5wQ2.N*`*iG\8Ydj'FOCYA1j;~;Ce+Ou~-~~P]LBQeZY<<
@S1_60
TGATGCCCATTTTCCCCAGGAACGCAGAAAACCCCATCTCAGCCCGATCTGTGTCATGCCCTGCGCGGCCATCACATCAGTGATACTCAGCGCATTTTTGACGTTGAGGCCGATGCATCAGTCAGGCCGGGGGATTTTGGGGAGTAGTATTTCGGTAAATCTTCCAGTTCATTTTTTGACTGCCCTTCAAGCATTATGGGGTAAATCTTCACCCCCATACGTCCACCAGATACTGGCTACCACGAACGATATTGATTTCATCAAACTGCTCATCGTCCTTAACACTCCCGCATGCGTCAGCGCA
+
wyf~~~u~`DSXbYke,~~Q~F~L}M~~~mpZM~8Jnd~~m>-~_lMK=~_~~M~VH~=~]aIYP~Sm`?T~~7e?obSv[a^~]WOi~UZ1|S[{O]O_ORBFUn~~~QQ=as~~{MTnQ\p|^|[\3Y~Rn~G~GDb~Cb~j~~6Qy=~~bEnooz~r~vrWci~os<NggE~7q~UQ~~~7~Nsh~i~r~O~Bg~c~~uY:j;A@~\@f~~i~~~ElG~E0~~DLjm-?~C~dI~k~Fs~<Yh~RFs~SCyU~aJ~}fmm`wd~oODBCh@~~[a~f~[~~~~eJ~OuHkIlI]Fh\RqQh
@S1_61
GATCACCATCGGCGTCTTTGTGCTGGGCTATTTCTACTGCCTGACGCAGTTTCCCGGTTTTGCTTCCACAAGAGTGATCTGCAATATCCTGACCGATAACGCTTTCTGGGATTATTGCCGTTGGTATGACCTTTGTGATCCTCTCTGGCGGTATCGATCTCTCCGTCGGTTCGGTGATCGCTTTTACCGGCGTGTTTCTGGCAAAAGTGATTGGCGACTTCGGCCTCTCGCCGTTGCTGGCATTTCCGCTGGTGCTGGTAATGGGCTGTGCCTTTGCGCATTTATGGGGCTTCTGATCGACGCCCTGAAGATCCCGGCATTTATCATTACGCTTGCGGGGATGTTTTTTTGCGCGGCGTCAGCTATCTCGTTTCGGAAGAGTCGATTCCGATAAACCATCCATTTATGACACGCTCTCAAGCCTTGCGTGGAAAATCCCTGG
+
Qh~l~j~>~Y_~~_~^M~{;~t~A~RO2dKAcb~~F8WN~rp~g~[~~8W~~~_~``@b~/VTc5~Z?Vkyx~aE]~~9o0p\}~~>[~U~~mN?\~Mb.~~y[Sn~~;l@~@bm3N_H9x?~~8~W~~hpaZ~l[Y~~^k~~tHla[}m_C`=:cs[~Ysnj~Z25w0~+Y~(~~YYA~wf~1X~Q~~~~amhD~jHUX3Uux:X`H`g}3~n~,S~~~~|RFJ[~{T,~V;G~~c?-~n~~g.eh5VK~~~B~~PjPfW~k\@OQkV+[~g~?UN[WgV~D~1~{+I~Sc~~n}~nN.[Xuq9}~R~Gh?:r~~Qaw^V~q~a~oIek~osnGx*~z~~Hy~j`n~~~~>~d~-[UJpp~FKaSrbPS~A_x~~4D^~<S{zf_e~d_H~S6~yVl~V~~H~g~qVr~BcMm@x~XPH}\G~_>\d^Ni~~wt7ELY~EM
@S1_62
AGATTTCTCTATCCACTACAACAAATTCAGCCTGCGTGATCCCATCCTGCACGGAGCAATAGATGTATCCGTAATGCATTTTGAAAAAGTATTGTTACAGCCAGATACAGCGCAGAACGATAAAATGGCACAATCCAACAACAATTTTACATTTTCCGACCGCTTTGGCTGCTTTCAGGTCGTTTCAATGATATACTGCCGTCGTTAATTCAAAAATATTGAATAATTAAACAATCTATTGAATTGAAACGCTTTCCTTCTAATTCGCAACTGGAACACGCAGCTATGAGTAAACCCATTGTGATGGAACGCGGTGTTAATACCGCGATGCCGATAAGATGGCCCTTATCCGGTTAAAAACGTGGCAACAGAGCGCGAAGCCCTGCTGCGCAAGCCGGAATGGATGAAAATCAAGCTTCCAGCGGACTCTACACGTATCCAGGGCATCAAAGCCGCAATGCGCAAAAATGGCCTGCATTCTGTCTGCGAGGAAGCCTCCTGCCCTAACCTGGCGGAATGCTTCAACCACGGCACAGCAACGTTTATGATCCTCGGCGCTATTTGTACCCGCCGTTGTCCGTACTGTGATGTTGCCCCGGCGCCGGTAGCTCCTGATGCCAATGAACCAGTGAAACTGGCGCGACCATTGCCGATATGGCGCTGCGTTATGTGGTTATCACCTCCGTTGACCGTGATGACCTGCGCGATGGCGGGCCCAGCACTTTGCGGATTGCATTACTGCCATTCGGGAAAAAAGCCCGCAAATCAAAATTGAAACTCTGGTGCCGGATTTCCGTGGTCGTATGGATCGTGCTCTGGATATTCGACTGCAACGCCACCAGATGTGTTCAACCATAACCTGGAAAACGTACCGCGTATTTACCGTCAGGTACGGCCTGGTGCAGATTACAACTGTCGCTGAAGCTGCTGGAACGCTTTAAGAAGCGCATCCGGAAATCCCGACA
+
:P%M&wU>IG_Cbi(TCG_b~~9mDFkHSOAK`~t`qO~BSJB/@~WPGH&%*9S-=JJN}IyZ3f9~)g~D??GM>~[C1\&4RTkM]A~GGn`KItIJ\.\X~06xaPyh~WVO?M[YKW_cNN>p5E~f3J</=~Z~PTaM?6Z;SGQ]\BOxaKOm_NHgVRTgRBadS@~PFWZV\~F8>j+Z~PP]_VAGsjsKgX~6UvV~A%B~~V28;he:G.TeZjpRIa]>7HD]BWGPXW=S~~J8P?~T~SHH8AXP&GK8^MR]4x~^AmD>R]/2X.XGF,]M%G~^K8mqT8TZ+A8C7:?YTBL@*6D3m(QTH@DfHr[Z%~2`A>,3F~MX~yp~_tbDwEUCBxfGd>`P}hB<_(~f~KL}1-VP~HQjJ9iI/G`RS?dN./Id1GEbPa[Te)gL7GBAOhWB<6iMFV~4I/UL8x~XYW~<HMV>iULEKeEEV9cYNLaT?G-G~[\GEGAJinUY<a\EC&Guo9S0DEXPIIT44DL8H\A>CSTM/~OE^m?T\OH%Q^A}kj_~l=c@r+:rE_1HLR[<8WNj8lRITP+:Ga3}~TpQF*KXNN_~b96VbTLVK^~_A*rEOZAL~7]DnmZF1JBiBHL,ZVHiF4SDi;WFRTOQK>RC0@V7GtYV~iGY;LN?QbQ4Xq9>MWMtR_<F~P;-JiH6H_aR=~bL^D@H<HDH%NAC@:U{YN~d-FVJdHZ[/L8cMHpHMu_M5]MFSc~~BX`D\3LNL7<OC($a6T8S>T_D&{GT\EQ[~'\Y4:nB~`NBN>`Teqo^<F*<AHNY[)GH`b,RyVQVH+sl~G;M@*=82?D,Tc\~Pa4~PkQ;M3bhiHZc^QAZSKPGGQIZE4YRSaQ4Ue~bUMTKR~|&P;JgE};ZMBGOG_cX>ELfiJDKTsS:TO:iHRW[>PHYe^qoLX@Y[Z<Pf=YI3@RILK?i~SPtfVRUFK=OfJrNgc%V~I(cFSrd~5FZYmS==kd@~
@S1_63
GGAAATGGCAGATTTACTTAACCTGCAAAGCGCAGCAGAAACGCATTTAGCGCACTATGAAGACTTTATCCGCAGCATGAAACCCCGCTTTGTGAAGCGTGGTGAACGCCCGTTATTGCTGACGACCTTATCGATCCGCGCCATATGCTGGTTTTCGGTCCAAACGCTTGTTTCAGGAAATTCTTGATGAGTACGGCATCCCAAATGCCTGGCAGGGGAAACCAACTTCTGGGGCAGTACCGCCGTCAGATCGATCGTCTGGCGGCGTATAAAGATGTTGATGTGCTCTGTTGATCACGACAACAGCAAAGACATGGACGCGTAATGGCAACCCCGCTGTGGCAGCCATGCCGTTGTCCGCGCCGGACGCTTTCAGCGCGTACCCGCAGTCTGGTTTTATGGTGCGACGCTCTCGGCAATGCACTTTGTGCGCGTTCTGGATAACGCCATCGGAGGTAAAGCGTGAGTAAACGAATTGCGCTTTTCCGGCGTTATTGCTGCGCTGCTGGTGATTGTCGCTACGGCGCTGACCTGGATGAACTTTTCGCAGGCGCTGCCGCGTAGCCAGTGGGCGCAGGCCGCCTGGTCGCCGGATATTAACGTCATCGAGCAGATGATTTTTCACTACAGCTTGTTACCACGTCTGGCGATTTCTCTACTGGTGGGCGCGGGCCTGGGGCTGGTGGGCGTGTGTTTCAGCAAGTGCTGCGTAACCCGCTGGCGGAAC
+
g~dObdE22Nn~e;~0lc^~P~w{g\~~ssq=X~8iRJk5\~~q~V^b~~W~e~\~5~zv^,f{~jK~df~pX]HMwj_C/d~fG~JK}~o:~2~`XzP~E~XNNPIshlgV~Tky~{rwTI}~KLSf~Q~~;:~2T;`k]~~C~Yl~~DS+S~vM~~c~~Lb~QB~TID~j~\_xc~gM~i~~as~9RO~C^~~^~Wu~LKR~W`o~@~{yXwfh&RlRP8D]~~~nNEU];V<[{v~lOiKVFa~~b<GwC/~v~UK~^P0Ph?Z~gIdew_~m~UPPZFuOH_~9x~~~~~~epB^8Rsiy~(~~UL~^WIqclLS~~~~~zjIQsX8t~Y5~Y~a]~~~Q@@c_T|ZNu9~9Z~9~EAX~`ZxiB~~3mq4vye~~~Y~kHn[f]_ISSd3x~dGw8~zqZ~O~~~c~WAZOwdz~~~~~S~g~4^b>E?yPmv~fsLV~T^~{rkOMY~,[rgFuvY}kKDj~~S~Zc~~fH~~~]D~e~~~eK}=o~k?~vqbG~\f3EPTS<J~N7zc~pP]j{O=djH^~i~6B~U~1hJUYA0jF|~4R~Kk\Ir~xj~Z~h]~`v~bC~eN~g~~~`~~Axed~5~OY~X?bz~r;S~~~QF~gss`~=Y?~~WUqWSzPn~a~Q~6f~~`~~~ReSvPY~W~gq~9w~~v_O5HN~~z[~~BZhCo~~~~c~_~aO~68OzOMfF^7>~^mbR~~[ba~~~U~^~~qd~`xc^s{i~~on~~~Ajb
@S1_64
TACTGGTTTATGCCCTGATAATGCGGAGGCGTTTCTGATGGCTGCGCAAGGGTTCTTACTGATCCGCCACGTTTTTACTGGTGTTAATGGTGCTGGCGCGTCCTTTAGGCCAGCGGGCTGGCGCGGCTGATTAATGACATTCCTCTTCCAGGTACAGCGGGCGTTGAACGTATACTCTTCGTTTCCTGGCGTTCTGACCATGAGATGAACTGGAAGCAATATCTTTTGTGCCATTCTCGGCCTGAACATGCTGGGGCTGGCGGTGCTGTTTTTTTATGTTGGCTCGGTCAGCACTATCTGCCGCTTAATCCACAGCAGTTGCCGGGGCTGTCGTGGATCTGGCGCTGAATACCGCGTCAGCTTTGTCACGAATACCAACTGGCAATCTTACAGC
+
*:3A*(.1>3*(6G7.<3@1G63,><H:I1;&<@:ACCF0,]34G<41A+4=4A<E-16*4D+':@D42?617;7+/G7%B<6--F'4-88;*65>.'G292<'N*-TB7$;H/:)*50)?C>D'I90O658:'39-:8AC13?2N;6+H:F7'?:@0<>8&%))35'>?C8BU%*?44G(?@::7J199BE3CN/,+(GF>-6>[:54@1/7DDD)9+6)M1/9'8?-:5E041S4=,95/C>)69SA65F-@I@:57B$=5('8D.-%9<&+)I4<H+H*B)F?E6I*%J:.A<@<<N5P37*7,0I(6C-/JD@9(==G3/*+=G9)DW'Z/R75/407$78J)07,?M((X-%=E:A73;74;OB<+(*+2<E6>345(/0(.19)>(;C
@S1_65
TGGTTTCTTCATCCTCAGTAGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCTATTACGCATATTTTGATCCTGTTACTTTGACGAACCGGGCATGGAAACCCGGTGGTGTCTCAGGATTGATAATATCGTTCTGTCTCAACAGATCTAATAATTGCTGTACCAAATTTGTTACTAATTGTTCACCATTAGATGAATTTCTGCCGATTCAGGCGCTTCGTAAACGGAATCTATTCCCGTAAAGTTGCGCAGTTCACCGCACGCGCTTTCTTATATAAGCCTTTTGGATCGCGGGCTTCGCAAATCGCCAGCGGCGTATCGACAAACACTTCGATAAAGCGCCCTCTCT
+
I5M`13D3IIEGB.M1F=1:D2'L$5M;0=M[G3<=<C2G<R>A@OI79>E(34OG>4024?0?H.$FJ2=5C>O2R2>5EFLUd4D%%935QQIC(7RM(SCDV)QM4;C=D=;14A24a;(OL8*PC>53;TR9`JG3G:3Y:B.BH8:G5</-JG?f4J21GC*3<JdGE2E,9KF.D.:=,*.;JCU@$/647N=H2='R2F&@*G3H;B4?E:['@P-@@SKNIL0>K1;(<<.>F9J/n)22\DG?+:BCL](/JFC/U+2O?M;I32<3ICWHL3KUB<A<;0AGQIQ9NB4T=0EEQD<ELQaD.IBG4FF1QMT7C8D'=<[=B11>9/F2(FPE>'\6H
@S1_66
ATAGCTGGAGGAAATTATTATACTCTTAAGGATAAGTCATGAATATAAAGACGCTAACGTCAGCCTTTTGTCTTTTTCTATTATTACAGCATTGTTTCCTTGAACGCGAGGCAACAAAATTAACCATAGAGCAGCGCCTTGAATTGCTTGAAAATGAATTGTCGCAAAATAAACAAGAGCTGAAAGCAACACAGATGAACTGGGAGTATATAAATCCCGACTTTCGACCTACAAAAAAGCATCACGGAAAACAAATATAAATCAGCCTCGCTTGCTGAAATATCAGCGCATCTCCCGTCGCTGATAACATCAAAAATGAAAACGGTGAACA
+
SfDKBD<QUC~Ez~TS34RO~gM~a~vGpe;;ULTTMN81afII_Z~QbP`KE>Iet&;Ne,X7>~KZKBLw2jDP@~c^NQ9QMAFG~>jN@NUL:`jS'C=ek>-3<hPH1YWPWZpUpK5iVK~ashFV6AJ~L<`W~C^bYGDD(rVUDKK{SKZMA_32~>*:HcN3b>lKRnLC_dua?/IPMe~KPbO?~AHG`m:@d~Z0ljGEF~1R^M1>AaGOPTLORPR)5KBsJ~Y~N&Di[35JArF@XJ^s~s5AJHB@fQj?<O{Y?>>y%E.ByHNBO~;>QBMZW^xL~MH;~CR=?Ng?OT>K~J[<GSIViRC=CyW~H~p
@S1_67
TTCGGTAAAATAAGCACCGTAGATAAAACCGAGGAGTAATAATACCAGCGACCTCGATCGATATCAATCTGCCCGACGCCCATCGCCTCCGTCACCGTGTTTAGTGCAATCTGCAAACCGTAGAAAATCAGCAGCATCAACACCAAGTCCGGCACGCCTCGAATCAGCGTGGTGTACCCTTCGAAAATCAGCCCCGAAAGCCGATTTTGCGAGAGCTTACCGCCAGCGCCAATTAAACCGATGATTACAGCGAGCACTACAGAGCTGATAGCCAGCTCCAGCGTGACGAGCGCACCCTGTAAATAACACCTGAAAACCCATACAACATGCTGCCTGTCCTGTCGTGTGTGGTGAATTACCGCCTCTTGCTCCCTCCGGATACCCAAGGGAGCGGGCTTTCTTTCACGATGGCGATTAGCCACCATAAACATCAAAATCGAAGTACTTTTTCGCTAATTTCTCGTAAGTACCGTCAGCGCGCATTTCGGCAAAGGCT
+
I3ASd`;C-:Q3~~\_Ch=TaO6V]HRIB>~H%=~PYgd\~/cW(>4(`BEOO9k~OIENFAkF;cSiDG@~J_F9YJ:JJMWwUMjgTqD{89~'WPjYU3W^Q~n>H^UOy@JOK~E*jFY[NV\7oAb=/8xTfNO=>7[72gGOOIPF^<^}P:a6IAD;H{a<JB3F5N<t)@IPWWR2QC~c:`rB]uK3gy~~vb~]A:VCI^O^G1et3PI@~B?\;YO\CMW=~VV?N@>T~]E*ck{SG*f0D_`<I~qIK@TIS>E.:@W5~Z7LPa+TcRHdD7~JeSf@d6FGDHI;U`BC:5_ISb~2-1n/vRM\7BXwG\~I1HBIkQZ~GJHXu3]~:D\.l;M~97T?gRUqXoBN7~>=2Ti~HBW@RF$J>MHGSZSI?sBoMAGE{BN~l-Z~D*<mG<~CX1W?_yU~eTRBkVTNtdMMioJksTJ~aI@7<TFxNYTCA8Cf`mCXGM6xF?`~fqwC~9J;^Md>7H?H?Os\2t0:3;0J
@S1_68
GCAACAGTTGGACGACACAGAAATCCGGGCCCGTGTTGATCCTGAATGATGCCTTTGGTGCGTTAAGCTGCGCGCTGGCGGAACATAAGCCGTACAGCATTGGCGACTCATACATCAGTGAACTGGCGACGCGCGAGATTTACGCCTCAACGGGATTGATGAGTCGAGCGTGAAGTTTCTCGACAGCACCGCCGACTACCCGCAACAGCCGGGTGTGGTGCTGATCAAAGTGCCGAAAACACTGGCATTGCTGGAACAGCAACTGCGTGCGCTGCGCAAAGTGGTCACGTCGGATACACGTATTATTGCCGGTGCCAAAGCCCGTGACATTCACACTTCCACGCTGGAGCTGTTCGAGAAGTGCTCGGCCCGACCACCACTACGCTGGCATGGAAAAAAGCGCGCCTGATTAATTGCACTTTCAATGAACCGCCGTGGCCGATGCGCGCAGACCGTTAGC
+
R~~ubQ(;~v~~g:Dh~~j41~Kb|I~~yK|{~kV~jV~U}v>~|~Mct}ev^u98ms~~~^vRz|F~~~Oaf8Z~~j[^M~~oL~^hb>d~d<M~~X~eI~w_~~XrRb~b~~~J~~xN~@I`~D8ca~yZuVhdR~1g~~{~~N~UAWR;IJR<TUhd~~~jM4~brkzoUZj~W_~J{4P~MPxQU~{I~Oc~R~N~c~^g~y~0~~LS~K~~^h~wJdo~c~~z|~T~oa[V;[WwGS~~`~jn~VMF~kAHVtq~Y~~~Q~~::~~~Q\|u;L~2RG~~b~~~`dx~5SZ5~R@*Pn~P~wt~qnk~edl~Q_p`s~Av~Nz~ck~b~~vjZ,Q~okg,~~~~_QG~O~_OL~J_C~~~~NdFOd~~~UnfUbNbxZLvYZ~iH~~Rwc~PvKDt^~]C~~oNC~`~?[GK{~cqgXr~jYCGgOj~~~~~nV*x2LJ~kW~~-SYUY~I~O1~e
@S1_69
GGCGTGCCGGCGGTGCGGCAACGCTGTTCTACCCGATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGCCATATGGACTACGGGGTACAGATCAACAAACTGATGTATACCCGCCTGCTGAAAGGTGAAGATATCACCCTGTTCAGCCCGTCCGACGTACCGGGGCTGTACGACGCATTCTTCGCCGATCAGGAAGAGTTTGAACGCCTGTATACCAAATATGAGAAAGACTACAGCATCCCAAGCAGCGTGTGAAAGCCGTTGAGCTGTTCTCGCTGATGATGCAGGAACGTGCGTCTACCGGTCGTATCTATATTCAGAACGTTGACCACTGCAATACCCATAGCCCGTTTGATCCGGCCATCGCGCCAGTGCGTCAGTCTAACCTGTGCCTGGAGATAGCCCTGCCGACCAAACCGCTGAACGACGTCAACGACGAGAACGGTGAAATCGCGCTGTGTACGCTG
+
vO:;3VN;VD~Fb^:yFJO,G^Z.wO[ZKV`ElVN~@[gl\Ow=@/6CLUEf0]k~~AGGU6I;Ks4ZDV@~8n=2xDGHV[sZ7LG0K\J'PQ<~9~GKEDKK;FO1Wp:~B`H6|];FKD2~iAW~~~6ABAJ:TW?~O4wOR~UN]NQmOUP-S:]OkhN72r~HP{D_$~~R{B`GMC>~uL~MU][LA;B-bAJ$<KLtGI<~H|0k~~fQKP&_~J<>D;~2KHdEP@>UWHU_'HT~GH>OV>@SF8OXDMKKR?_4MY[h,%Ra5lKM~VZSRynsaGA/QZ>gV~V3U)VG*si8_~D[T~~mUiMGw\8;IE~'~TgDU:HGa>=>;NVM<TEO9cT-NK>UMsELMlMe]jnM,/ZzA(I:UKXM>~OJ5J]SDa_NU>CEa:PP=xK;}QEA~[\pG{$LF^(WN`8fZ8lK~G~x~42xFIpCfCq;>qVBEGVPiM-OUrXT~DO~5CSKJLK>_E5Yx]}~2B<V^>7-5MW/Nj~TkC_A^<<=>BSi~
@S1_70
TGCACCCGGATGCGCAGACAGAGGTGATCCACTTCGGTGACGTCCAGGCGGCGTTGATATTTGATAAAACACTGCCCGTTAACAGCTCGTCCGGTATGAGTGACAGTGGCACAGATCAGTATGGGCATTGAATGTGGAGAACCGGGTGGTGTAAAGCCGTGTTATCACGAACGACTATAACCACCGCGAGGCCCAGAACATACTGATGTCCGTACCGGCGGACATGACCCTGGAGAAGGTTACGACACCAGTTA
+
7FH&>:FAMM'9XB5?+E?H$&88@5EEB<;V0E=3-2J=*9M?e.*A8.OM/31F>;VBN9@@*)H15-DL=):f1^@'-<PIDA&E?Z8;7;=R=5B4QK,QN%P@fd.BZ':B/;MEPEB3-.C-RI98A=4=>C@$BEBA4?G:=AB9K4-XPH*J)[/D<QD<?4`1=-6FC@B-15%?>-=;:*G<';.~87_O+YA?*;5Ed;8DE93Gi2D:6<LLM>L1JJA;HE[9-GA,1<I:J?.JGKE'H@
@S1_71
GGGTGTTTCAAAAACCAATCTGCTGTATTACTTTCCGTCAAAAGAGGCGCTGTATATGCCGTGCTGCGGCAGATTCTCGATATCTGGCTGGCACCAGTTAAAAGCGTTTCGTGAAGATTTCGCTCCGCTGGCGGCGATAAAAGAGTACATCCGTCTGAAGCTGGAAGTCTCCCGCGATATCCGCAGGCTTCGCGCCTGTTCT
+
TCLP`~~CQD'D=X~GlQ>GY><c@2ET~>B@O]`@KKA~_B~XW~$N>~iS9^G4PHY<T~IfH:.dD)Ma~KJW587(bYTWIX]y,53F`>:71yVG~27}?@CE4I/m0X>;Dye-^U5Nd~EmT~?@~/r~D;A5RD~FYp?ZO'K@UAK7?`~PZvaIZWE[eDc1E_7~EEHi/f1Y/ON~~<OWeB(MV0:JG}
@S1_72
CGCTGGCAAATCACCTGGGGGCTGGTGCTGAGCATGAGCGCTTTACCTCCAACCAGATGTTCTTCGATCTGGCTCAGGCAAGTGCTTCCGGAGGGCTGAACAACCATAAGATTTACACCACCGGGCGCATCCGTCATATGACATCACCAATCTGGCGGCCTTCCTGCAATCCAGTATGACATTAATGATATTTTTACCGTTAGCGGTGGCGTACGCTATCAGTATACTGAGAACAGGGTAGATGATTCATCGACTAACACGCAGCAACAGAAGATTGCTGCCGGGAAGGCGATATCTGCCGACGCCATTCCTGGTGGTTCGGTAGATTACGATAACTTTCTGTTCCAATGCTGGTCTGCTGATGCACATCACCGAGCGTCAGCAGGCATGGTTCAATTTTTCCCAGGGGGTGGCATTGCCGGATCCGGGGAAATATTATGGTCGCGGCATCTATGGTGCAGCAGTGAACGGCCATCCTTTCCCTGACAAAGAGCGTGAACGTCAGCGACAGTAAGCTGGAAGGCGTGAAAGTCGATTCTTATGAACTGGGCTGGCGCTTTTACCGGTGACAACTGCGGACTCAAATCGCGGCATATTACTCACTTTCCAATAAGAGCGTGGAAAGGAATAAAGATCTGACCATCAGTGTGAAGGACGACAGG
+
5I:?A=@?4=?8<LCS[8YF4\L?G%9%U?@>?LPW)7H7^>SG,<Pj]IZ-EcSDg@D35fEFIJQ+8@HCPA0608C([?BRLI<%,74G4,54M=Fr06B[IgA06j3AMH9@GG@J3fH<>SV/D@@I~:Y~G<0PI98>8V2TAaWGYC:GKCM6:C5:Q-:>O?D@$/28h:@O7ILAC%,4U2M1I:?QLKDB-*8@3>J0JA78AdKbe0BQ9E:9TL+E?F>SwG8Bv9f~+58C1_A@)9FISW]$F<Z<\9B87MM6=K5?W@9=LLO/<=N2FJC3~?S9%;C7>F@.9jCBNOTQTf[3JII8J3N'[EH\7B1e+[)K7ZD;%=/5J%K<&=E*VI,/E*>PDUMd/0H<%3H'VM6D.95/GN2ROF:<HI.2B4AGI,9IF7(@fGg?U3CR9~p>F8KD81(M;BJ;E^l12=]AbXU2>KewK:=HD>3OD5U5JDCEQRKb4GNATGGEI[Z=4Gj+qASCI'(JZD7K=^pCXM;+J\o<R7'yR=?2RFIAGJ0BEKCYiBNTF*98;7]BAbRG:6N-ONY=O=5;**E%EH6A)A*=(k4T\qQD4EHbIVI?6S+97GH1FSFHHI<&fBUVAI?|E>_57^F@/~)<GJADT)2A'ATu:J5/Jb.E;&NW:JI>JKLGL41Z6HLF@DEL6NS7K9
@S1_73
GCTTCAACACCCACGTTCGCCAGACCTGCCGGGCAAGCTGATAAATATCCGCCAATACTTATCCCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAACCTCCACCCCACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGCGGATATTTTCCGGATTATCACAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCCAGCCAGCATGAGCGGCGGCGACTTCGTTCCCACTCGATTGCAAAACAGCACAGGG
+
bg%HT9Su[M7S0kQ@@~;L)=H?L~[q4@Gna3~G?@~x\3=NWL]oIT-JNJGXF-PK~U(`ZZgtzcPFSKg>nAeBRjI-@_[DO~L>Q=Y>oM5O~FkQaH`FFQEtH\~F;FGHBQSe]@$TKh4IoX~F_IZ3~~[-JF5SZ<~Y\AMJ><]V]P^T;Y}VcE[LEHN^]D(7M[cq~~C89%MS@=;ISf^G8Je:O~U~CU/M'RF~OGcH2A~E;gK^F:4<CU/dUXLU~O2~b8WC>9GB5(DAj^~spd2pI8Y\N6D<F4;5~P59Y<8`=K$_9\G^>9
@S1_74
TGGATCAGATCGCGGAACTGTTGCGTATTCTTGGTAGCGCCGATCGTTTGAGGAAGTGATCGTGAAGAGCTGGAGCTGGTCGTGAACAGTTCGGTGACAAACGTCGTACTGAAATCACCGCCAACACCAGACATTAACCTGGAAGATCTGATCACTCAGGAAGGATGTGGTAGTGACGCTCTCTCACCAGGGCTACGTTAAGTATCAGCCGCTTTCTAATACGAAGCGCAGCGTCGGGCGGGAAAGGTAAATCTGCCGCACGTATTAAAGAAGAAGACTTTATCGACCGACTCTGGTGGCGAACACTCACGACCATATTCTGTGCTTCTCCAGCCGTGGTCGCGTCTATTCGATGAAAGTTTATCAGTTGCCGGAAGCCACTCGTGGCGCGCGCGGTCGTCCGATCGTCAACCTGCTGCCGCTGGAGCAGGACGAACGTATCACTGCGATC
+
b\~/lW67(8~]O7>shV.f?~+@>.MWd,PS_NVDiK9kS1BbuMYK5K@-JBBF+M[hO>6~I]A@p62K;F>cQT?W'<Y9:YN<7<]F4hCNAAK8G?C@S>_5e~LP7iYBNo;EaUHkKX-IVMA~[Q|~_YcAE~cKb;J~`D~OwH0.*h;G%J/J~~4IFpXYQ:g'D~~bA~Bq1/|4o4;TO?~:<4QPZxw>/^?3ZxkXUjPYs;MMAW1Lk1E*poBRbtaQV\V~U=X>)qow-/5CZ;LP~cBfGAGm9jIMQ_M9zi0X\XR_[X_HPyUM[oBb7WV~M_K]MVl5LW`oB+UZI1/z~HHIAGp3\Nbs~>UJh<@~f\md^<M7A@`~Vk/S>|HW99P31k>s)KpQl^FSWPJparQ4^DIX~MC3VPpIH3CI@o|3E~H~NOQ~Icb74:b,FbiZD\1Yc0.^~[f~XuV9I:5dXTw_^INc;EL
@S1_75
TATTGTTCAACGCAGTTCCAAGCATCGCCATTCGTTCGCCCGCTGATGTTTGCGCGTTGGGTAAAATCGCGATGGCTGAGGCACTCGCCATTGCCAGCAGTTGCCGCCACGGTTGTAGCAGTCGCGCCCGCAACCAGATAATAGTGAACACCAGTAAAAGTGCCATAAATACCGCCATTACCCGTGGACCAGTCCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCAGTACCAGCTGATCTAAGCCCGGCAACAAACTGGCTGACATCCGCTGACACCGTTTCTCGGTTTTTGTGCACGCTCAGCGCCAGGGATCAGTTCATACGCCAGTAATCTTGTAAACCCTGTAATTGCGCCAGTTGTCCTGTCTCGTTCTGCTGCTCGAGTCAACTCGCGCGCTAAATGCCGTTTGTTCCACTCTTTAATTAAGGGCTTGTCTTTCTCGCTTAATGGCACTGCCGCCAACAGACGGTAACTTTGCATGCGCAGCGA
+
576<GH.471<5@C96'6'E;NCE3+3,05O:B0(:$1F473@%()7*66FK3:A:>L?G1=4KB47?9,\E8=F7=/:U=1EEB:357P*<956/=AD'G@H.3==EF%D42<+eX82332DC>-I/D?.;4RA;</530'>:>?7;Z@B2P:&:=J>6;AFD@;3-?<8I>U2,>@?=23J,FF>4A->-I7H9H-<:?L61I<67-RN7.B9a<$0.-G5R./5&3K;NEF*=37N86ID<;19)1>.479/<=<;I6UB.ACA\-?898/%Q57P>R,H5=(G.<6UM1>&R6?P;33$?:O;H2960;-=',50>A+;U?:H%,E95*9$:5;2>M=D8B3:E?>72BH-34%46BEBG/@19/;$&+D9D(I<>:JJ-BW9X`A6B8+9>DB$K.%N0D4$D/:4A3+C%*0L%G2B14,J%IEL(FC3;)00/>;FL?=G?BC@<R7F2<>358+4-F<AF@M%38G,%4V@'?5;>@1J,J*:0-B7R3*
@S1_76
GGCGGCACGGACGGCGGAGCGGTGCATTTAACCGGCACCGGCTGCCCACGGTGGTGATGGGGCCAGCGACGCGCCACGGACATTGTGCGGCATCGATTGGCCGATGCCGCGACATTTTGCAGATGCAGCAACTTTTATCTGCCCTTATTCAACGTCTTACCCGTGAGACGGTTGTTTCAACTGACGGATTTCAGATGATCTCCTGATTAACCCGGAACGGTTATGTTAACGATTCAATTTCTCGTCCTTTGCCTAACGGTCTGCATGCTCGTCCGGCGTGGGAACTTAAAGAACAGTGCAG
+
9781M@<K'-&6S<61;/@79,4;=,A8C7e,E83?*I;(R<6M&C-<RGR5L.K81;IaMI'B0564-F3&4@Q55&L4EE=?W:(0NH,H?+:H6D*9=7:L$6.54*@,J.AD@CN=;(6..H&:?,P-98(9F.F-27/)=KI.=EA+D)3IH15:40<D@<07BT9$6=$J8I)$=D+2H5(A=5,L<>=,.C<LAPG%<HFV?KX,=&8637%EC,A4C09IXPD>K><6665&21.I.;19O1/>4GO$(4I'/<=%*,6::>;CIA<V,A6(J<@+7<+:EL9M9'N:*3a=N
@S1_77
TTCTGCAATCTCAAAAGTTAACATCACCAAATATAGAGCATTCAAACACAATGTTCAATAGATTTTACTCTAACCAGTGTGCTATTTTTTAGCAGACTTATACATGGACGAATACTCAAACTGCGATAATAAACTGAAAATATCGAATAAGAATTGATTTTATGAGAATCATCATTATAGCCTATACCATGTAGCATTAACACTTTACACCAAATAGACATACATATACTATTGATTATCGACCTAGGGTAAGTTTATCAATTATGTACGATAGAATCTAAATAATCTATAGTAGCAAGAGGCTTAGGGGGAGATAATGGAGTGGAAGAAAAGCTTAGA
+
I/,KK=>,A/=>3GR)>~Adb?HE8<DIHC2:HFrI^L-MR@Ak'9=MHSK\FJR4r=ShVl8SDFTR:\ZAK=?KnOPb`SUWBI)R~7O6D%'@`V760BIQ5?UCDHARA:Jbb+N::XB4YCFSL4>SI(H4@AJ<.01[?3TK6axURB%*<G7>0G6Nn4:Oxh-@-6<T=CD_ADOG<1I%MW?5RGcP0FE/DHDH5VR[>=S46cO[,P\2~;<R8HaL6TR.AK,~EW[9E-@P>E'Q<`:<FlB4dOY3G)G?MJ?:DIX.-I7Q68GXDXEAU>{Q1W;M\Z1IEY9@DCDm3/OLL>FGGB+QT?F<97*D0DD'?1A;H=9PA?B
@S1_78
ATGCCATCATTCTTGCGTAGCCGGACTAAAACGTTTAGGTCTGAGTCCCGCATTCGCGCCGCGTTACCACCCGAGATTTCTCTTCCGGCGGTAGGACAAGGTGCAGTCGGTATTGAATGCCGCCTTGATGATACGCGCACTCGCGAGCTGCTTGCCGCGCTGAATCACCACGAAACTGCACTGCGCGTTACCGCAGAACGCGCCATGAATACCCGTCTCGAAGGTGGATGTAGGGCCAATTGGTAGCTACGCCGAGCTTATTGATGGTGAAATCTGGCTCGTGCGCTGGTCGGCGCGCCGGACGGTTCGCAGA
+
~fu~.~nVH5~~[d~_ks~CFl<XN~1gJ|]@F~~~~UNuX&`wP+.~_~~i?{pU^]kY5z_Jw[~Dt6i}6zY2{Dm8yIY~~~~~S=U:~yOG~9RH~j~{J~~~~Qwd]~~Lth~vnK|8~~Lp~Mh[}W)t~~O~~~N~o~~K_~~~~f~yF~~tBg~nm~Jja\U~~S~XIhSm_4R~U~xK|bnmzT@N~-g_H~5D~~M~QbP^QQ^U~~czO~N~(;~~=XG~~K~q~7gEffU}fw~ecJCa~>U~~~y~K~~~~~n~u~~>6~liag~~a~+X{U~p~wX=N1~GsH~P~R;~~q1`~~~Q[
@S1_79
AACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGTTGCGCTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTCCGGCCGCGATAGCTGCGCACTGCATTAAGTGCCGTTTGCAGGAAAAACTGGTTACTGACGCCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCTGCACGATCTTCCGGCGACAGTGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCGCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCGAACCGTTTGGCCCCATAATGGCTGAACTTCGCCGGGCGAACGGCGAGGCTTAATCCACGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTAATACTTAACATGTTTATTCCTTATCCGACGCTGTGTTCAAGACTGATGGCGAGGAGTTTTTGTGCTTCAACGGCAAATTCCAGCGGCAGTTCGAGAACACGTCTTTGAGAAACCGTTAACAATCATCGAGATGGCGTCTTCTTCGCTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGCTCCAGTTGTGCGCTGTTATTGCGACATTCGACATACGGGAAGGTATGCGCCCCACAATAGCGCCAATCAGCATTGAGTCGCACTAGTGAAATTGCGCCATTGGTTGCCGTCGGCATGATTTTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGCAGAGATCCCTTTCGAGATAATGGTCGATTTGTGTTTTTACCGATGTGGATCATCTTGGTGCCGGTATCCGCTTGCTGATGACCGCTGGTCAGCGCCACTGAGTAAACTCAC
+
f~~I~T~ymS~|~E~~KcXA~~~_ok]c~`VP5SH~jFb~H+h~~Nd<v~I^q~~~G~[CW_BBwQ~~\=jU>~B~Mm~qV~~vpUm~JypQ6zYe~~H~2xT~vGuqeb~jHzF~~zK~@k>EK_[~FgsHDw~j~`@P~~~~Qtb~7]~F~~R~'oaF3*U~x~aMPUK~~yk9T~~X<~b~pbWq~~gohjf~Zy>n}.Ejd`ZgCW~~~~b]J~~~MMfz}~n.G`[rNQAwuNCihycV_vbmZ~Qj?fJm~hZ>zcz~ylg8~qm~&~/_]c~}Z~~LJ~iC_~~72_~e~Hi_i3Gi~Iy~p\q{7Y~NOD>]~-`~_;K<~yQfe\~~i^~=iSjmoFj~RpE~]Ww~E~q~e~Z}J~|yNphf~~~I~V~F~~7N~|~~g>t~~~^~k~QiKh~~S~~H&pT~G=~~~X~~^Ee.~s~[b~~qVoYlVOzVn}~|~hzT~KR~;}~~;X~gDq~_G~}a~[}c~qCn~l~`g~ZlV~K[GIq,~_L~>~2~~~Jm;4@~ozW~g`D~~9@FNc~}~~XzhZud4~~~p~lGi~~~~rU~wG~~opVIbr~~~bF~~C\l~~c~g~~fi~eG~D~e|,sB^`~Vr~~Z~Evg~~Qf~~~Si~I`2y~gzOo3^Z@~~~;~~f~~WPM~~~~c~~~sud=:wa~~j~lin]RVrQ&~dMf^~W~a5`(y~~gSSD3~5ZR]fSx8Sx~fsJ~ddavgra~bSIcUTR~<[~b~8;u>~Xl=SHVfn~~~=tZA~l\~~~~B~UzkBUr~\Evr4~:\o~TvI\~~~~}a~XVPp~~z~APE~t~*il\:<t|O~J~s~[*UxWg~~~b~~a~~-qtj~~[~[~~<~~zgF{~m~~kj~~T]EGLFhovGj~~u~~|en[~d~Q~UO;~~~~@~~5~Nr`Z~GKhx~J~SUqf5~P?~8vi~b\|G_dZ~~b~~qA^VSSWj~lYtk_Jo(y]O~~[JSc~=~j~OrJTt`Y~~
@S1_80
ATCTGCAGTAAAGTAAGTTTCCCGATGCATCCGTAGCTCAGCTGGATAGAGTACCGGCTACGAACCGAGCGGTCGGAGGTTCGAATCCTCCCGGATGCACCATATTCTCCGTAATCTTCAGCGATGAAGGTATCGAAGAGGTGGCGGTACTAACCGCAAGCACCAGGGAGGATAACGTGCTTTAGCAACGGCCCGAAGGGCGAGCCGCAAGGCGAGTAATCCTCCCGGATGCACCATCTCTTACTTGATATGGCTTTAGTAGCGGTATCAATATCAGCAGTAAATAATTTTCCCGATGCATCCGTAGCTCAGCTGGATAGAGTACTCGGCTACGAACCGAGCGGTCGGAGGTTCGAATCCTCCCGGATGCACCATATTCTCCGAAATCTTCAGCAATGAAGGTATCGAAGAGGTAGCGGAATTAACCGCAGGCACCAGGGATGATAACGTTGCTTTAGCAACGGCCCGAAGGGCGAGCCGCAAGGCGAGTAATCCTCCCGGATGCACCATCTCTTACTTGATATGGCTTTAGTAGCGATATCAATATCAG
+
~jI~~AaBfgQ~Ns[`~~QzgvlnER~~~w~n~~:|~fn9~~~~GKW~~WaY}~wp~[Ux~~My~-Z_gycLaT=mNGV6b}FBKm{D~~~uo~TF~]j~+~~b~~~~D~~XS~`aa~W9m~z@k~O'V~~Vb~gKw~Ck~~~*i~N|~g~[V^bp=vp[EX`Y~xg]v[~K~}~fzGGStwq~'~Q>`~Mj~]~~~VM``9o]jUs~`~~~\lcGkyN~dJNXj,~j=?|f~R~MiM~|~~e7^~~zl~\~>n8q[~~L~mwgnQy~aZhBK~~Xr~~EnAwub{~k_~~~HYbfY~ViKmrCSUM~~~~d~\8~~~i~`~}m:D~]~7~|qP~sU~OJc~r~:v~vNR]rN7~R~~^y~)Z8~~wTs~a4m~~]`~~r~[K~I~~=~E~ME~QE|~I:fo~~Zy]~aE@LQ2~^~xd[~~W~~k~MH~RtRA_o~k:~v~~v~n~oM~|~~~qbgDs_~~~~~HGOyMF:~~epYQ~UOp~~lZ?~d{J~U~~~~~Jh~;Y~~~X~~NK~mHv~f~t|HmeaRSH>~X[~Gx[~MbvK`~~~~km~~I
@S1_81
GTTGTGTTGCTGATACTCGCCGAACCGGTACCGTATCGCCGTGTTACCGCATTCTGGAACCCGTGGGAAGATCCCTTTGGCAGCGGCTATCAGTTACGCAATCGCTGATGGCGTTTGGTCGCGGCGAACTTTGGGGACAAGGTTTAGGTAACTCGGTACAAAAACTGGAGTATCTGCCGGAAGCGCACACTGACTTTATTTTCGCCATTATCGGCGAAGAACTGGGGTATGTCGGTGTGGTGCTGGCATTTTATGTATTCTTCGTCGCTTTTCGCGCGATGTCGATTGGCGCAAAGCGTTAGAAATTGACCACCGTTTTTCCGGTTTTCTCGCCTGTTCTATTGGCATCTGGTTTAGCTTCCAGGCGCTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACCAAAGGTCTGACATTGCCGCTGATCAGTTACGGTGGTTCGAGCTTACTGATTATGTCGACACCATCATGATGCTGTTGCGTATTGATTATGAAACGCGTCTGGAGAAAGGCAGGCGTTTGTACGAGGTTCACGATGAGTGGTCAAGGAAAGCGATAATGGTGATGGCAGGCGGAACCGGTGGACATGTATTCCCAGGACTGGCGGTTGCG
+
T%=I8<L^GLRLUTN5F>SO*9%HiA1EMZI]9=]T'HNH=FK5OPM=3[/ECA5S\<>IE']RLS~NANLQJN<@E?0K;79RKQHe/=d'MVTAKTECa9:G%o?E>CG).66P~5-AD>B98JL9U8O1V?NWMBOA~MC-_+6:8:MPJE*87/W@LrEFMIPA0\\BHOE\S/5,N96O48$ML72?6K<_KBMR>}:=N49`:Q~(?6QFQ2<V>A9]CdTE?E>1E~CID/F3\a5<B=[:TF16>N/ZK;QA64G/C@O>EKEAIN10@(N9e8S<=:F>F>U1[Q8?7=QP@=F*@LD7/HB*W;>EGlbC=P$8_8%3i3`>UDPIFIVKH=NC%1?eA=S3BSN?@0E>9T0AL8/;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2>GLT:,:P7F.U947VIF;`>@/IX87;XRQGOV@*^,43IH=9P^0PC?L7T4WL?-%:Z37I%I*`L7@LUPkvL-OEBBOJI}>?,NK<9\l9]>6HGI=QO;PSMZ>F>C8>B|O\MR7~,EH<]4jW3I&_<2N?(Bx?n70R78L;?;IBT9Q/P0<c1<WQBo6CR581OLa~f%I=;;4B^<FLA9$_FWM?6a9$BU18]@
@S1_82
CACGCCGTTTCTGTTTACCAAGGAAATTGATTCTTCCAGCCCGTACCTTTACAAGGCCGTGACCACCGGGCAGACCCTGAAGTCTGCTGAGTTTAAGTGGTACAAAATCAATGATGCCGGTCAGGAGGTGGAGGATTTCAATACGAAGCTTGAGAACGTGAAGGTGGTGAAGGTTAACCCGGCATGCACGACATCAAGAATCCCGCTTACGAGAAGCATAACCACCTTGAGCAGGTGGAACTGCGCTACGAGAAAATCACCTGGACTTACAAGGACGGCAACATCATTCATTCCACGCATGGAGTGAGCGTACCACCGCGTAATTCTGCCGGACGGACAGGGCATCCTGTCCGTCATTTTTATTTTTTCTTCAGCATCTGTTGGCGGGTGCTGAAGAAAGAATTCTCAATCCTGAACACAGACCTGATGCGCCTGGGTTACGGCGAAGGCGGTAGCGTGCTGACGGTCTCCTGACAGTGAGTGAATAACATGGAAAATTCGGCAGCCCTGTTACGTCGTCTTAATCATTACTGTGCCCGTGCACTGGAAGGCGCAGCCTCCCTTTGCCAGACCCGGCCCATGCGGAAATCACCCGGAGCACTGGTTACTGAAACTGCTGGAGCAGGGGGAAGGAGA
+
D3?DOI^H(I7=FE<6A=[[_2Z?/9OUY%=@CN;:N79P6BCQ?3}UWY/Q>=5UG;)BI>9D1EQ80@><[VB;>AC8KG>@;_:87;MX)=?D8EN><0*7<WD*K>:><'3HdPWDAfNBI3$Z+/G>F%f8XT;E6b:EiAD\7?@JK5C=KWG/<6TZFQ2AoQ=5MI-K@Ge'=M**:E?<P=@/[G=ANB9M:H9=G=*?d=@;-SK=>@JCPAGJ?cB3PN8?LCOJ53-BCUPGJT;?9<Z)PU,D2E*_J:<>1A?<GBR0KcL=0>N>K~PSTU>wO?9@)G3D)ET$?~0-:5@?ED2GX_@L12*Y[;I;93RI,$IB~1[I<K?7FESABG4d-F5<ZTH3=A3@AR8Qc2PG54SOL~7DbNB'=JL8V=N61[p`,6-=LVkY(Q$N27:-y0AJP4]IC%V~94_<?~)AV$KY2Kv:9H>8M4^D=546E>5REAB:SD-JDO\JA8<LV(;F6F/EOH.J=:B8/<Y^TlGLMUND-+Gb@ZXIB<EGhIHI:.8>N1:G.8J5-OLC4IRGEKG>'2<<1b<?>F11+O-C$/K@VN;'?/w;2F)3->U6I5k>0.W5W;*7?MIGUbHG?H]DE;*IJZUJ@4+Z9:@BFB)xEKG?pF>>EH9/a;MhEbH<
@S1_83
GCAATAACATCATCGCTTCTTGTGCATCTACCCCAAAGATTGATGAAATCATTGCACGTAGTCCTACATGGGATAAACATCTGGTTTAAGCTTCCATAGGATTTTATCAAGAGGATATTTACATAAAATTCAGAACCATCTCTTAATACAGAAGTAGCCCAGCAAATGTTTTTACCGACGACGTTATTGAGTTCCGAGCCACTAAATTTGAAACTCAACATCAATCAACTGCCAAAACATCCTCTCTATTTAAGTTTTTGGGCTTCGCTTTCAGGTTGCTCTCGTTATGTTTTACTGCTATAGCTTTGTATCGAAGTCCGCCTTCAGGA
+
1MG9QP;)0W0,?D.6>U1;-EN.Dda4:^&NIG&RMK67E<:;6MCFFIX%DH.,`>8E;G<;7<A;&ID\<36DXL/Q=tQYjZ;8:ERa31GMA+>SL[M)?;FH%'@L=Fd<S9FA2>NIV=>J?OC/&FC@7,*7AT:Q?G0G5)*=PQ~HBMIXC3<C.S:;8=ZKDDC:0lW<>9%2?=0Z.PO`:/Q>:-(DO_7:A+F`>QGN+G8B;=>?BBJObBB7ZWNJQ;;GMWY/IBU,-@DNP92H.4N)I8GDA=EG%U6-+.5,F>1%S&Nh:8F>@<O?]=c>+Uo?KDCNt(R\?b^Fg(EFHB;*3@R,P/Q5d0GHI
@S1_84
ACCATGCTGGGTACTGGTTTAGCAGGTATTGTTTATATCGCTGCGACTCAGGTGCTTTCCGGTATGTATCCGTCTTCTGTAATGGCGGCTTCCGGTGCTCCGTTTGCAATCAGGCTTCAACTATCCTCGGTAACTGGGCTGCGCCGCTGGTTTCTGCATTCACCGCCTTTGCGTGCCTGACTTCTCTGGGCTCCTGGATGATGTTGGTAGGCCAGGCAGGGTACGTGCCGCTAACGACGGTAACTTCCCGAAAGTTATGGTGAGTCGACAGCAACGGTATTCCGAAAAAAGGTCTGCTGCTGGCTGCAGTGAAAATGACTGCCCTGATGATCCTCATCACTCTGATGAACTCTGCCGGTGGTAAAGCATCTGACCGTTCGGTGACTGACCGGTATCCAGTACTGTACTATGCTGCCGTACTTCTACTCTTCGTTGACCTGATTCGTTTTGAAGGCGTTAACATCCCAACTTTGTCAGCCTGATC
+
~eS~I~~^S~~~~~^ff~tha~~|],|]vM~\xN~oCy~Emi~XN~~y~I~~{~b5oALMVFX}YN2N~~YJP~eavQ~N]kJ5<q~ud+ph~~~~~~MegUs|~:~o:f~b~|Q~3~cfu~~kx{kTbghzl?Df~~~~OmH~PGnR~~gqlN~~x`N~x{hKkr`NZN~Y~~8~~r~~[O=~L~~~D~b~P~~jh@~rVu~~e~iMXP|bb~;rewLoLr@_T~~~~\CF~~~M~_I~s~~~Z~^~bYDr~M~I~a{\~~gilHf~Wtm{OielWsWg~L~qGrj~~KOk~e.(]g~y~YY9rmpyGwF5~~u~Z~pA<~tm~`Y\xA~hM~YnayNlWA[~9~~Iu^Re~u~~)?6b~r~~e~dvxvJ~~U~m~_f_l~~Q?r~?d~iJXL9l~hJr~@Wt\~~DR^hm~Y~~{d~~~44RO?m~o~jQn~~~bk~b~U~h\h_-~~~w~~w~~L~Cw]ZM~~~EdvmB~hqQ~~.dd}~_
@S1_85
AACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCCCTTCGGTGATCGAGAAAGTAAAGGGCATCATCACCGTGGTAATAAACGCAGGCACCGATTCGGTAAAATCATCCCAGTTAACGCGCGCCAGGCTCGAAGTCATCAGCACGCCAACAAAGATTAACGCTCCGGCGGTTGCGTAAGGAGGAACCATCCCACCACGGTGAGAAGAACATAACTAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGACACCGACTGCCACACCAGAAGTACTTTCAAATAGGAGTA
+
=Q'.]iQQC<<D0O5JLc%6d^XHP74N<iU&OW/JS9SKFC7KHOL<+LE>yO{0{CXIBLJG`1:/>AQfb>{EBKZ[OPHNEG7ZB.Ed3FZ.K35-h<([+>RZ,+QSU@_N>2IU852NO(TRE>YC,9O0IF&LH4DS`RFIdECDN{:V>0J^U[P\4D>QA?C@]>9U54CBM='SK;)+OKoHe/X0I9^.IPD^C1O*;HD><E6%78@y;NeGUSLB-za.OR%:c1<G/7<PPY2=0E<O;H>CA@=Y@:oDA<RNSB<^K&LSZ63>OT2@SV_HI9C+[TFK4N@<F1GH2;@(Wf?H2Z)h/<FMa@25:.YP5<BNA->FN4mGB>8GHH^L;VA7;dO]>I*F<
@S1_86
AGCATCACGAATTTCCGGGTATTCTTCCGGCCAGAAGGTGGTATGCAGGCGGTTGGTATTGAAAGCACCACCACGCGATGCCCCTGCTCACGCAGTTTATGCATGATGGCGATCACTTCCGGGCGCAGCGCAACAAACACCGCCTGCCAGCCGTGAGAGAACTGCTCGTAGCTTAGCGGTAGAGCCATCTCATGACACAGCGCCTCTGCGAACGCTTCGTCGCTAATTTCCCCACGCTCAGCTGATGAAACGCCTCCCCCATATGAAAACTCTTCTAAGCGATGCCAGCGGAATACGCGTTAAATCGCTCCAGGCTCCCAGCACACGGTTAAAGTCGATATCGACAATCACATTACCTAAATCAAAGATATAGGCATTTTTGCCTCCTTTCGCGCCACAAGAAATTAACTGTAGCGGGAAAGGATGGGTTTGGCTATGTGGCAATAAGGGTAATCTTGTGATGCTGATTGCGAAAAAGCAGAGTAATTTCACT
+
inJ~U<oho~S~}~~pGUbQ;Z~I{~A]~R~X~?~~~C@S~ZHeK~0=~c=~~~~Nfpn7~S[]A~L~~6.~]~~Xt~][bO~~~s~dJgT~hrAqR6\~=]icVgi{e~~x~{s~Tk4b~WISy'~~6JxCWGXps~Q9d~~Uz<~~q{~D~2\^2~4~~{~J~.~`r~P2h~>~~~uY^ibBWnSAhU~\~ajjb~|~h~~~pzdl]:ujZ4_tpvg~|KL_qe{~QDoh~I,Z~ew~jSQsUt~u'dd|t`~MvU~v_VDIc~g~[C~uF~O_YM~Av~m*J^~~b~_~~U~_J~KV~~~~q~F{:~~e~We2cNp~~~a~~F~~@J~~~~{J~~~o{\~Za.FuOfe>Nx~~~~fu<dZxA~~s~uJO~~X~~Nm~z~~wv|_Kq~~bV~:I~~~_R~]~tz|Z~P5W~3~_~?Z;~~f~~WD]~v~~WB|~lF~J[~dAt~SY~pH|c_b~|XX]~6VP~~~d~z^~fr9>iWJhwW~<e\~FcXT\D
@S1_87
CAATATCGAAGACGTGCCGGATGTCGTTTTTGCGGAAAAAATCGTTGGTGATGGTATTGCTATCAAACCAACGGGTAACAAAATGGTCGCGCCAGTAGACGGCACCATTGGTAAAATCTTTGAAACCAACCACGCATTCTCTATCGAATCTGATAGCGGCGTTGAACTGTTCGTCCACTTCGGTATCGACACCGTTGAACTGAAAGGCGAAGGCTTCAAGCGTATTGCTGAAGAAGGTCAGCGCGTGAAAGTGGCGATACTGTCATTGAATTTGATCTGCCGCTACTGGAAGAGAAAGCCAAGTCTACCCTGACTCCGGTTGTTATCTCCAACATGGACGAAATCAAAGAACTGACAAACTGCCGGTAGCGTAACCGTG
+
OrlqErE^kQNCL?TmWKMyj[SqUROZHM_TGT=Z=O7+`E)zPUb:,@cT~G<AW[X]qH+@~?Vp]^V<.W5S@TK~Q?S=CMKW:3G*MH~:UT(+EW|3~_H~Ef~m_?.)[>HR~^DLhCEJT/;WJf\IQdFmU~K.?=dWI;=IUNRJNTR1G][aP7pbx~V?~bBo~bO0}J;PtK~5)N;H|Sm:[^}DHBPE`d<\RIN>eX^J3HOgTH=@YbIFO+XqCtw-IeMZxYp\DEi5[-y%Jh@2TV8fGOIHI*8dhT<LA/:B4\3O_]O:A^~R1cG:CNPIOXs-~1Ny7G<|0~JO[{Y~HDO:4TD4cgMBL2+I9@D~E>s4=DUU~~QEBaM3/ariS15_9l8~f;~j3S{BU@SQ=iS
@S1_88
TGCCTGGCTGGTTCGCCAGCACTTGCTGATGTCGGTGACAGCACAACGCCGCGATATTCAGGACCCGAAGTCATCAAGCAGTTTGCCGAAGAAGTTCAAACGGAAAATCGTCTGCGCTATCTGGTATGCCTGACAGTGGCTACATTTGCGCCACCAACGAAACGCTGTGGAATAGCTGGAAGCAAAGTCGTTGCGCGAACTCTATTTTGCCACCGAAAAGCAGCTACGACGCGGAATGCAAAACACGCGGATATGCGCGAACGGGTTCGCCATCACCAACTCCAGGCACTGGCACTACGCGCATGGATAACATCGACGAAGAGGCGCTGCACCAAATTGGTCACGCTGTCGTGCTAATATTTGTCCGCCATAGCCCAAATCAAC
+
IUZy+~4~~cWi^c~~j{VIf~U~F`~qH~,WSZ~4X~)~~XZ?j-<-}[~~ZNxQ^l~jV~pl~9ZQoD9hMIo~J`gu~al~_L~~gx2lQ]~IaJH~U~Qe~~~~L_c|p~W~}Eg~lUe~vV|5Pr~hZ~~Omu~h~QK[~Q;N[kE~~\vN`>Qud~A~~~~V`l~Kl~i8~ZRT~[Fafks~]rf~\ZZA~;^>]~R{sj~k~~ne9zwj~Q]Ass~~~~~s~KdK~e~d~m~oSV~W~b~zb~~-X`~*_l_MgsGY9~l~UUZkYD~1X]e~W~j^^R^lmlh~Fu~L]`~ad8~~~U~Rv~~~~e:DfNv~jEZ`jM\w]<6pD~Y5~~T_~~~pP|{dyW~IMXZfT{C`jH~twTb`~en~OL:b~~wi~ua~
@S1_89
GCGATCCAGTTAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTTGCCATCTGCCGGACTTAACCGCCGACTGGCCGCCGAATGGCTGGAAACCTTCCAGGCGAAAGAGCTGGAAGCGACTGAAAAAATGCTCTCTCTTGAGCAGAAAATGAGCATGGCGCAAACCGCGCACAGCCAGTTTGAGCAGGCTTATCAGCTGGTGGTGGCAATCAACGGCCCGCTGCGCGTAACGAGGCGTGGATGTCGCTCGCGAACTATTGCGCGAAGGGGTCGATCAG
+
s~~yj~X~jy]b>~;~[D`NX~_~~~8XcCL/*~{W~~M~`YLfC'CODi`MO~~~d~F~~>z~~Y>[~3AQ[TfPTobI~~C7q~w0~~zw~YbeaT~RV~fuG~tLT1BAtN~MIl~~VaN~i_C~x~G~~^B{=~uZhhaA|X8su~J{NGm}jwq~Xhv~v~V~M~~{^~~~9~Nzr\ZogwR~7reZ~>JSod~kCiMSf~~jW3~~^TOt~Q]~r~2cyMe~`KjUy}WDKF`e~DCW]Y|1l5~Du~Y8~n4~~lF\~NR~Aa_.jh@x~~zAp^~
@S1_90
TGGCAACGCAATGACCAGTTTGCGCCCATGCTTCATTTGCAGCGCGACAACCACAGCTTAAATCCGCCCGGCGGTTTCGACTGGGCAGCAGGTTCAAGTGTATTCATCTTTGCTCCTTAAACGTCAGCACCACACAGCTGTCCACTTCCCAGCACAAACGCACTTCGTCGCCCCAGGTCGGTAACCCTTACGATGACGATGGGCGTTTTGTAGCTGGGCGCTAATCATCTGCCCACTTTTCAGACGAACGTGATACACCGAAAGATCGCCGAGATAGGCAATGTGTATCACCTCCCCCACCGCGAAGTTACAACCATTGGCGGGCGGCTCTTCGCAAAGCATGATTTTTTCCGGGCGCAGCGCTACGTGTACCGGCACGTTATCGACACTGAAGCATCCGCATCGACTTTCAGTGGATGCACCAGCCCCGGCGAATCAAGCACCAGGCCATCTTCCTGACGCTCTTTGAGT
+
~~XK>su~>~ZQi~O~Q|~~5gMw~~3^lC~Z~~U~Zym`Tx`lnrhm6Mf=zxgeFjtysT~P~~FXPd~g?@~`dS~gcJY?q~X~<}Gz~~y~d~Oy~|~:m~P~~~QZ?YLyCT\K~gsyFS[[~m~~~~rlkrVbjVkqrg&fjF`Q^~yU~~sqX\FWPhrk>~~pH~~jS~~~~H~N~`f~J;;ea~~`PC~V~`v~LZ^b/DKuS~~JA6vR~ff;a~R`>~f4@?}TL:{~~tqMX^D_Mk`:~~CJ~Dnz2)}C~]G~N~~~a[?gh~w{S3~PysIS~g~jg]_Dij~f@}]T~P~V~^~NLdas~Z~W~j~8~~IGe~sYW~p@~X\~dX>ujgOYq~t]YKa~EZA[~|yQ`P@[WcP~jVE~lYCB~gfQbwLl~U~{~W{EV~dp~y?R~M~RV~CMH[Mo~]@g`~~D,rQ=D{w~Bh~pey~jY|~e'~+~'~~`]~WIUjP_~u~~C~_ZV~~
@S1_91
AATTTCATTTTTGAATTTGGAGTCCGGGTCTGATGTATATCTATTTCCTGACCAGACCAAACTGGCGCTAAGAATTCTCACGAAAAAAGGATTAATCCTAAAGATTAGGTGAAATAACACAAAAGTTTCTGTAAGTGAGAACTTGAGGTTTTTTATTAACACATCAGGACGCAAGTTGATATCATGAAAAGATAACATTCAATTTTTACAATGGATTGCGGTGATATTCTCTGTTAAATTTATGAATAAAAATTATGCGGCAAATAAATTGCCGCAACATATTATACCAACAGAAACATACCAAAAACTCAACAACAAATATTCCCGAGCATAAATCAACCCGGGAGTTACTATTCTGAAGCGAGAAATTTGTCGAGATAAGGTACAACAAAGGAACAGAAGTCTGGAATATACCATT
+
ZAEH58JQLKB>O=@C5?@=26FH):UAKNCI=9*4FP/+37@BICJ*2:*UDJ352/M'?>8?PUI.K=3@6J2,m?D2TH.A,O:7@4M,HFB0CVK$S)+3:K7:9>,6JG;QBJF1)AJ87['=QM=K<A)K;PF6U8AG,?048QXR>HH8FIL/CMe,Y@<O<01:&6C-KKOD4LA5A9BM0`%98$<7*;1),P<.1B4&^CE3>K>B2C=Q.&I=?GIB0>D5:B:-50.GL9eM2%=TC>LI>BI)9,D*A98?~G0I<7?51(.:)/7ECD&0KJ3ETQI)I--6:6*K,.B61524;)<*G$4+8<JHP,8DG`]CH@iO3AE:OS/Ka.P4CCL~BC6?5CE%B2C:6CJ>H>;1V,%<4;1R+(;42FH=9$m>FC;%K3'A4=IE@7/8GMH9;2AB<OA7:A
@S1_92
CCGGTGCTGACGCGCTGGAGTTAGGTATCCCCTTCCCGACCCACTGGCGGATGGCCCGACGATTCAAAACGCCACTCTGCGCGCTTTTGCGGCAGGTGTGACTCCGGCACAATGTTTTGAAATGCTGGCACTGATTCGCCAGAAACACCCGACCATTCCCATTGGCCTGTTGATGTATGCCAATCTGGTGTTTAACAAAGGCATTGATGAGTTTTAGCCCAGTGCGAAAAAGTCGGCGTCGATTCGGTGCTGGTTGCCGATGTGCCAGTTGAAGAGTCCGCGC
+
ETRVB'O_BMTGPUJANUGOIEL&@>@=>OF\bN0OOXKGHD5O>7EB,38+L:-C'UW>GAIZENI;HK[G7@>`I^?,@}B2H]IINW(LJJG6@GW?;0&DEMRFIE~,EBED?E52@EV.8R;&@4PM;QG6D@PDuOeYGCOy,dBUW<a/28AFN8I??GG](>Q=CNG/G>@(;^X49RHN?@J3(JE@:CK;9B'OFH64qI6I]@3D91:IF;4hj,M8G@\U8:eSZC=7C\V@=>;fCFi@71M5EBPCZ)KB;HJEC%O%:qPm=-_6%8u
@S1_93
TAACAAAGTTTTTCAGCTCGTTCTATAAACGGGCCAGACTCATTTTTTCGCCGGGATTGTTAGGATCATCAATCTGAATCACCGAATGGGTTGGGCTTTAGTCTTCCCACTGGCAACTTCCTTTTGTGCGATATCGTTTAAAGGATACTGCACAGGGTACTTGGGTTGATGACATACAAGCATTACCCGTCGGCAAGTCGCATCACCTCTTCGCGATTAAACGCCCATTTGTCTTTACCCACTTCAAAACGGCTGACGGTAATCACCTGCGGTGCAGCCAGCGCCGCGCAAACTGGTGAGTAACAGAAACGCCAGAATACTTTTTTTCATCATTTTCGTAATCCATCAAAAAGGTTCGAGATCGCAAGCAGGCTGATATCACCAGCACTACCGCACCTATCGCCCATTCGAGTTAGTCATCCACTCAAACCAGGGTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGGGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAAC
+
F5KQT6'MYHpdRA%DU>+>X~U?AJ4>EG~XMJw.@W?s~5IR27SI+ETZ*=wBE]MW2M~ATt&Q@@:@-QO6H3?7JgeK^JJaksIW2IqH~U{@R1=TE\KJcGP<r,EUL_H(GNX9T@PCk:PI?]\A8kHw=sf3{8J4TNh~~M2B]ERBMeYI@4HG}_BkFd{BW-2?Qtq?3YNO~ac;R;COAXpu5m_LXHKCJ>?~h5ruaHJMk=FJGVyE~O?2GZP$bX~<n?kZ+^TOf\~XUDbZWI%Ut~I~FV~6B[%9VSQX%i;fQ8<m:~QO/QgY=>WQQUGg%GYW{>C|*LLBCV8:CYXFxM~hIFG~Y]MY18C\-CFdLd/LJuUJB~Lu:;]QO2<:OWfCag~PfFDAj3[~~&H~[Qnj\S4zHB1ovT:H7lw~u}t_%T\[E2Y$VPR,fX~<x_-QExW;aA4Y<~I<C4oDrPD?an~S@{_9HOIJJ'S;~YQ:GXEGMyY1K[CyR~NNU?G~]^IlM~_KFCTJXVa6QJ<[5<UH:3ma'>LLXjDhP`Al_R~Is_?KqIh~CK0K?Ww~iGI>=J)KqB~VQ~^K]~ST.ICFQFNM~IJPMQ]HYLeQLdo~aT8=P[cSfcu0kHPPNX.~vNDBXgf4UZ14A=COUc18SZ<IbK}A2[t[ry~Q^NVE;I
@S1_94
AAAAGAAACCGTCAGGGTGGTTGTTTTCCCTTTTGCCACCGTCACCGGATGTAGGCGTCACCTTAATCGCACTGACCGGCGTAATTTTGCTGCGTCTTCCGCTACACAAGGTTTACCCACGTTAGTGACTTTCACCGTGCGGGTGATCACTTCTTTCGCCGTCACGGCCTTACCGATACGCTGACCCAGCCACGAAACACATCCACCGTGCCATTCGGAAAACGGATTTTATAGGCCCGGACATCGCCGCTTTCAAACCAGCCTATAAGCCCTTTCTGGCCTTCCTCTCCCGGTTTCCAGGCCAGCGTAAAACTGGTATCACCTGCAGATTTCTGCCCCTGCCCGGTCGCGGTCCAGTCCGCGTCTTCATCATGCAGGTAGTTATCATCGTAGGATTCTGCCTCATCTGCCCGG
+
G~H?9mOgT]MaTNH=ITb?HKN}:LRER^'wHHl@~2bRO@*f^7]kKNceWBKbK\g~:hUP}LMq@A:MNs~{$]a:zQ~QPHE~ely~ZPME[Y=Xv07H~6(YQbfL*_~Qj*=Wo6SAFaS*JNZEQOJ=E9lmWYDXI'x@`5SV{:UAV;C,GY0urM4>E~c~EeU\g@XRE@u~5N?]H>M^oPG`\:Z+gL~8ADicP>FS:~PAK_Zf~9AQYU~5`Z7S75[46@oWL|=DoLRDu~ik444M[4S;N[]EO8IU3B~@woQb*fe|aWNSKSa7HE~m^K;~RSBGR~DLfk~iH``k4@JPP;Gv>GMXcXT/~SJ=O\H*BESWc,No~UIOMM8IhU+U@FYrVc37>LmMaKhQM'7LF@Yf\dyPIYjF\??E~):=M~Y~9>=E>EaQQK0~~~
@S1_95
CAGCCAGGCATTGCGCTTTCAGCGCCTCGCGCAGGGCAATCGCTTCACGAGCGTAGCCGACAATACGCGGAGAATCGAAGTTAACGTTGGTCAGGTTGGAGAAAAGGCACGTGGCGCGAAGCTGTCAACATCGTGTTGATGATGCCGTATTCACGCGCTTTACCGCCCAGGCAGAAAGCCCTTGCAGCGCCGCGATGAGTAAATCCTGAAGGTCAGAAGTTTCGCCGTTTTACCACACATCCCCTGCGCGTATGGCAGCCGTTTCCTGCCGGAGTACGGATAGTTTGTTCACATTGCACACAAAACATGATCACACCTTTTAAAGTTATATTTAATATACATGTTTAAGGTTAAGACGCTTAACGCGGGGAT
+
O>N}A@K2F_X's5:^H`*=4UL>S~>^~GHNCSJQeRFmC~Tt3_V<>XGC~POQM\~;c0Y1WdEKFY$FXT@LESUP~[Qv>+:IL8R~=}]gK.~NJ~g0Ba?D.hQ~?2UKhMP~Ee{OKG*nI\0QHpUWGgYIG>5S~[]gq~d=`KI=c9avjh:|J`CaC~pF9~{8HGYAE;K1Dj~f[LKPBT;ZEK:EH+I?])14H^0JU?Mya;]LU:[T^lBbCJfH;=Tp>HZDg_\K~tFKbbqHWS~GJ~jJ2Gc@R4iMMObC@=Kx3MFk@~~nOU~WQN.FlQC6G6ThV1iS~AN.KQUZMAA[l=-6Zf;@GLG\RX@;Kd_I`~:==NSH^i1D^5JIVCG~^JHC0F;N8VTTR_cM
@S1_96
CGCTGTTTTTCTACCTGATCACCACGGCTACCACACGCCCCACAATTTCATGACCCGGTACGCAGGGGTAAACCGTCCCCGCCCACTCGGAACGGACCTGGTGGAGATCGGAATGGCAGACGCCACAGTAAGCGATTTCGATTTTGACATCATTCGGTCCCGGTTCACGCCGTGTGATATCCATCGGTTCAAGTGGTTGTTTAGCGGAATATGCCCAATAGCTTTGTCTTCATTGTGTTTACTCCTGATTAGCTATGTGTATTTGGCGATGCCTGATATGTCATCCGCAAAACGCGTCCATTGAATATAGCCAATATTTAAACCACCCGATCCAGCCCCAACATGCCGCGAACCTGAATGAAACAGAGCAGCAACGTTCCCCATAAGGCCATCGTCAGGTAGGGGCTATACCGAGAATTTGA
+
MYO~~KgP|s~~V;C]~h{~xW^~~~_oR~@N?=H~+_~}~ze2~Z_[q9IQEW~~~1ON~V_xFWrF|Wrx~3{c\~~~~~~~~ov~q~~I~;~~\I|0cTd]<~~M~Z~\+~E~\kg~FI~~N`~nmQ[~hn~Yc{iG~^g~~]Y<~o~~g^~{~Y~@mC~0x~D=Ht~}~Pe}qmkRA:Q[b~'~@~~vxabV~kF1~@~xX~CyRv~C{Dd~~Ps~~`\`qn{f<~h~x~^~zTr~~S~YGO~~bmkK~xoXMQ~1~+~N~~~`IV</k~Dy5;cQ^~`Ar~J~~~pV~YgOP_^Gyd~K84~~~1>R~RBZ~T~|~c~MkN`jq~wQ~oK-r~~d~~e~~m;|p~GVF~fw9vHu_~u]Z~I~n'~Yh\~c~z~Q\+VgwkC}HR>k~gy~4qpp\g{~~U8h~~hU~~~[Uu~`v~
@S1_97
GACGACGCCAGGTTTTCCAGTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTCGGTGAAAGAACTGAGGCGGTGTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTAGGATCATCAATCTGAATCACCGAAATGGGTTGGCTTTAGTCTTCCCACTGGCAACTTCCTTTTGTGCGATATCGTTTAAGGATACTGCACGAGGGTACTGGGTTGATGACATACAAAGCATTACCCGGTCGGCAAGTCAGCATCACCTCTTCGCGATTAAACGCCCATTTGTCTTTACCCACTTCAAACGGCTGACGGTAATCACTGCGGTGCAGCCAGCGCCGCTGCAGAACTGGTGA
+
^y~vMCBlQ[e~~~~R~~bdEDA^~\~~[LN~~~C,~NY3l~s9fkVUMghXrqeX~_~2p1iK~s~no8\~~~~UQMXbd~h1]~C;Z~?z~\tR~Z~i^~H~u8P~(kSd@~Rd{EV~~\On~q~b~[~VR~Q~xOexi~~qOB~~~<a~a_\~~~?~S~~T]G~~EZat~U~~H~xF~9~~c~~_~~1~T~~u~b_~k~CX~;>~~~xs~[]~~QEz~~M~u~reI~Kcl8~HC~z~VXT4au~[uy~[o~AKe|_^bZ~~^Xwf~XGI^_~n~~~_Hci~Jrv_5,~Q[Z~hu\~hb~wpRrE~?~~OOd~]~k~~XU~brn~N|tfBeBze}nR~nL~l`v~N~a~~{vaSK>Qu||~~~G\Q|]~~mhk~~M{~rf~S@~U26hwhJE^~1i~g~efK~~~~~l_W~~mv~rc~=~~~~\h~~`Ohvexn~VG~qj~[eX~
@S1_98
AAAGATTGCGTCATTCGCGTCGCTTGTGATGTCACCAATCCGCGGTGGGCGATAACGGCGCATCGCGCATCTTTGGCCCACAAAAGGGAGCCAGTGAAGCGATGATTGTTGAGCTGGACAATAACCTCTCTCACTATGCCGATGTCATTAAAAAAGCCGCATGTTGATGTGAAAGATGTCCCCGGCGCAGGAGCTGCGGGCGGTATGGGTGCGGCGCTGATGGCGTTTCTTGGTGCGGAACTGAAAAGTGGTATGAAATCGTCACTACGGCGCTGAATCTGGAGGAACTATTCACGATTGTACGCTGGTGATCACCGGTGAAGGGCTATTGACAGCCAGAGTATTCACGGCAAGGTACCGATTGGCGTGCAAACGTGGCGAAGAGTACCATAAACCGGTGA
+
~\~~yq{~I8V.~S~XFRM~Sp~~B~?a[bDI~~~aRo~JsTKli~t_E~~]GrU~\[aflV_V~VeMuPEOfVk~~E~9}~ar]drio~~?9EG~L]~~p;~~D:m8~OAa~i~F~\_TED[J~SI~sA~KHT~3@W>3hJcRcb\Gm~`yv~~u~~o[r;jjYTlKmsN~lu4~~J@\{g~W~]}~?R9dWZ~^qSm~vj}J~i~~y~~BPs_M~;{~=~2G6~V`~rVKB~B~Q~g~~?~IeEDM~~~+h~GXlMf>~~R~gZv~X~\-~XJKNU[G~C~@~~_M*v5~]Ua~^~X{{y|_~uZ~zz~gm~[NohJoDNDfek=~A^U~-~~~DRbm{R*N~EK?sZb~jkJ~~~[~^^cJ~[{~[@j~CW~v`~~~RD~k`w5~v^y~k=~_L]\kQ
@S1_99
CCTCTGCCTGAGTAGTTCAAATCCTGCTCGACCATACTTCTGGCGTTTCAGCATCTTCTTCAGGCAGATTTACATGACCTTCGACAACACCATTACTCCAGCGACATGATTGCCTCACTATAGCTGCAGCATCAGCTTCCATCCCCGCCGCCCACGCGCCGAAATTCTGCTGAACCGCTTCGTGGACTCGAGTGAACCAACTGCTTAGCTGTGATTTATTTTGGGTTTTAGAATACGGTAGAACTCGAGTGCCAGTTGCTGCGCTATTTTCAGCTCAGGTTCTTTTTCACACATCAGACTAATAAATCGGGAAGCATAATTTTCTTCATCCCTGGTTATTCTCAGGGCATCAACCAGCGGCTTACCCGGGAGACTGAAGGAAGTCTGACGGCAGTAGTATACCGGTGGGTTCCAGCCTTACGCCATTTGGCAACCGCACCCTGACGATGGGTTTCATGCCTGTAAATCCCCGGGCCACCATTTCCCGCCATATCCGGCTGGCGTTATAATTACCACTTTCTCGTTGCTCTTTTAACCACTCCCTCCATGGTGTCAGCGAAAAACGAAACCGCTGTTGAATCCCTGGAAAGCTGGTTGCGGAAAAGATGAAGACCCAGTCGC
+
dW5?KK@J9;&:,'<C&&>NF:\,K=D\S24;/?=>N(7G~MC,Q-5U.67ND6a>I0=39FC(H-?0D:RDH@7DE@.8N<3)5F+(P@IIJYL,AR56K1`A6J5g9;8G:+8C7;33>??8=9<+J39B;N3FD'3@Y+L8D1>%A5G-I6]60TOk0H/,0989;+S9053M_G9,>.37TF-,0>B86HY=/6K*:5Y*?1U><KB^Z96OBS>I<.BGP@F@:*BI8A::6L<GCAFB=&'BV)::2?CBC:0)<897<G3GAD>5I3:6GYQ3&K-GPH8?D(ABP==84E+9:,.EL)cA?:8?G<JCGD1;F7@BJ)=@6+UD1@O(BN00I>4?=(144:1]F6-(8ABB2+J:CEY7,B~PCGZ/7/R@?+?I90L36b9=)E:FTO@&>*;1K:M/*HEB9HT5U6&G5:38B/*?'.+@2>5(;BE>R;B61+*C9,QB%C[BJ?EL2HT;JEa48D4H-:*J=CaMHO=6?\<8'/E4</1590%EM5$=1AJD4I??1?LF>JA)YJ6:Y=1802@&d@%1DKMS.R<8<J@=BD?,>L&]L2J%:P?Q^*+C;<@@P?;9O$L>2P-E5.1-8%B4;ED:H5?2G-HB11>)EN+RH2.'ML/EL
@S1_100
TGCGATGTTGACACGTCTTATCCTTCAATGTCGGATGCGACCTGCCGCGTCTTATCCGACCTACGGTTGGCACGCATCCGGCAATGTTGTAAGGCTACAACCCTAACGCAATTTCAGCGCCTGACGTTTAACACGCCAGCACGCTCTGCCGCCATTAACCCGAGATTACGCACAAAACGCAGCGGCGGCAGATTATTATGAATCCGGCATAAAACAGATCCAACCACTTTGCATAATGA
+
<5~\Nm@b;l]5Il:SUH\+NFNL?~Pb7f@&w~\IPXrZ?TOV;H<a_UO~~]Ho\UWQJUQEA~KaF*;RFH;N_0~NX=JDvO<E6PTP78i4f~S9$^[F6kQSw@/C9<SaIM4O~I_h?Cx*BN;~>R+,8SU`PH)IBE:IN~sNFF(RW}DrJ<TF_V4m=JEKOFfNH~pmVN/~h1?L~P.7JW;9@A]9H+Co44GLa~*HK2-@nBIlNLZudk`*f<q<>;a'~i<
TEST lastal -r1 -a1 -D1000 /tmp/last-test galGal3-M-32.fa
lastal: quality data not used for non-fastq query versus fastq reference
#
# a=1 b=1 A=1 B=1 e=23 d=14 x=22 y=9 z=22 D=1000 E=6.44057e+09
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=100 normal letters=45801
# lambda=0.661467 K=0.0260716
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=24 EG=2.7e+05 E=4.4
s S1_36   411 53 +   604 GAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAACCCAACGTTACTCTAA
q S1_36                  XWl?TeW3A~]_PEo~Q]rL[m5T@DV~P[F<Ex6u\M~~LJJ[^CV~]OJ7G
s chrM  11090 52 + 16775 GAATGAACTCAGGGCG-GCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAA

a score=23 EG=5.2e+05 E=8.6
s S1_32   18 45 +   545 CCTGGCGGAAAAGAGA-TC-CTATACCG-AAGGTAAAGATGAAATGGC
q S1_32                 GQ6tRL?88?6M%=>E-=0-==:4_+E3-Qo&4<k;Z;0GKK5@\]@H
s chrM  2456 48 + 16775 CCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGC

a score=23 EG=5.2e+05 E=8.6
s S1_77   55 63 +   339 CAATAGATTTTACTC-TAACCAGTGTGCTATT--TTTTAGC-AGACTTATACATGGACGAATACTCA
q S1_77                 4r=ShVl8SDFTR:\-ZAK=?KnOPb`SUWBI--)R~7O6D-%'@`V760BIQ5?UCDHARA:Jbb+
s chrM  1295 63 + 16775 CAAAAGACTT-AGTCCTAACC--TTT-CTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCA

# Query sequences=2 normal letters=17803

TEST lastal -r6 -q18 -a21 -b9 -Q4 -a1 -D100 /tmp/last-test mouse_tss_prb.txt
lastal: quality data not used for non-fastq query versus fastq reference
#
# a=1 b=9 A=1 B=9 e=75 d=70 x=74 y=44 z=74 D=100 E=1.07541e+11
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=4
# /tmp/last-test
# Reference sequences=100 normal letters=45801
# lambda=0.192713 K=0.203529
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=84 EG=1.7e+06 E=0.023
s S1_26 60 14 + 786 GTTTTCCCGAAGAA
q S1_26             ~gib~I~xD~y~[L
s 12    13 14 -  36 GTTTTCCCGAAGAA
q 12                hhhhhhhhhhhhhh

a score=82 EG=2.5e+06 E=0.035
s S1_98 201 18 + 401 GG-TATGGGTGCGGCGCTG
q S1_98              j}-J~i~~y~~BPs_M~;{
s 22      0 18 +  36 GGATAT-GGTGCGGCGCTG
q 22                 hhhhhh-hhhhhhhhhhhh

a score=84 EG=1.7e+06 E=0.023
s S1_26 60 14 + 786 GTTTTCCCGAAGAA
q S1_26             ~gib~I~xD~y~[L
s 33    14 14 -  36 GTTTTCCCGAAGAA
q 33                hhhhhhhhhhhhhh

a score=78 EG=5.4e+06 E=0.082
s S1_63 503 13 + 727 TGCTGGTGATTGT
q S1_63              3EPTS<J~N7zc~
s 61      4 13 +  36 TGCTGGTGATTGT
q 61                 hhhhhhhhhhhhh

a score=85 EG=1.4e+06 E=0.018
s S1_100 133 22 + 239 CGCCAGCACGCTCTGCCGCCAT
q S1_100              R+,8SU`PH)IBE:IN~sNFF(
s 83       0 19 -  36 CGCC-G--CGCTCTGCCGCCAT
q 83                  Qh^\-h--hhh]ZVhhhhhhhh

a score=76 EG=8e+06 E=0.13
s S1_58 247 23 + 521 GCGCGGAGGAGGTGAACGGTGGG
q S1_58              ~~nQl~VTkqlxmP~k~~{4X>~
s 94     17 19 +  36 GCGCGGAGGAGG---ACGG-GGG
q 94                 hhhhhhhhhXhh---hhhh-FB]

# Query sequences=100 normal letters=3600

TEST lastal -Q1 -pBL62 -F12 -D1000 /tmp/last-test sd-ccs-100.fq
lastal: quality data not used for DNA-versus-protein alignment
#
# a=11 b=2 A=11 B=2 F=12 e=36 d=29 x=35 y=31 z=35 D=1000 E=8.12312e+11
# R=00 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.327048 K=0.105437
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=48 EG=1.5e+04 E=0.0092
s Q2LCP8 124 23 + 491 MEAHNLITLFLSLEISSICFYIL
s S1_1   360 69 - 743 MGFHNMR*LFFFISLREICFWII

a score=39 EG=2.8e+05 E=0.19
s Q2LCP8 394  34 + 491 FISKILILLPYMVLGRVYLTMLAFFLSVGVMIYY
s S1_1   395 102 - 743 YISEGNMFLDYFALGVLIFVFLVIFYGIIILMIF

a score=36 EG=7.6e+05 E=0.36
s Q2LCP8 14  42 + 491 SIYILPLIILIVLSISIKK--DVQRVHIIIQSLKLTLIVIMIVI
s S1_5   78 132 - 558 TITLLNLILRILLSYLIREVIMVQRITIAPQGPSFPVLYGLLAI

a score=37 EG=5.4e+05 E=0.26
s Q2LCP8 384 11 + 491 YLAGLPPMTNF
s S1_9   213 33 + 563 YLAALPPEARF

a score=36 EG=7.6e+05 E=0.56
s Q2LCP8 136 23 + 491 LEISSICFYILALNKNSRKGIEG
s S1_13  414 69 + 824 ITISTVMFHMCRLNHDSVPVLQG

a score=40 EG=2e+05 E=0.11
s Q2LCP8 284 23 + 491 LVVGTIGSLRQQKLIRFIAYSAI
s S1_17  515 69 - 643 VLVGRSGSGKSSLLTRFLVFSHI

a score=39 EG=2.8e+05 E=0.13
s Q2LCP8 288 20 + 491 TIGSLRQQKLIRFIAYSAIV
s S1_19  408 60 + 552 TGGKRSVQKVYRFLSYCLIV

a score=38 EG=3.9e+05 E=0.18
s Q2LCP8  31 25 + 491 KKDVQRVHIIIQSLKLTLIVIMIVI
s S1_19  417 75 + 552 KRSVQKVYRFLSYCLIVIIVITVSI

a score=42 EG=1e+05 E=0.041
s Q2LCP8 293  50 + 491 RQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVL
s S1_20   20 150 + 484 RRERKYRCQACSATTNYAIALLQSVSPDNRSSLRQAAFFLPGHCMRLTAI

a score=38 EG=3.9e+05 E=0.066
s Q2LCP8 206 19 + 491 QMGIALIVLGLILKLGIAP
s S1_24   77 57 - 251 EIGVAVIDCGGTLRCGIYP

a score=39 EG=2.8e+05 E=0.2
s Q2LCP8  94 28 + 491 EEGVTEGKKTKITDEGLILIYSSIIGML
s S1_26  118 84 + 786 EEAVRNSEKMSLSDSELDAAFYAVIVML

a score=39 EG=2.8e+05 E=0.2
s Q2LCP8 323  39 + 491 ELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDI
s S1_26  297 117 + 786 EFFLNLINHRIGKSAGWVFLLCLLLGFRGKYSVGSNDEI

a score=36 EG=7.6e+05 E=0.54
s Q2LCP8  98  39 + 491 TEGKKTKITDEGLILIYSSIIGM-LISMEAHNLITLFLSL
s S1_26  483 116 + 786 TQGKKV*IIEAWFLFITCGIVAV/LFCGFIHDLYEMILCL

a score=40 EG=2e+05 E=0.14
s Q2LCP8 333 16 + 491 INYIIGLTVLMSLIMG
s S1_26  673 48 - 786 VNYILSSTVVITIFFG

a score=42 EG=1e+05 E=0.051
s Q2LCP8 135 21 + 491 SLEISSICFYILALNKNSRKG
s S1_40   89 63 + 579 SAQIYTTCEAIKAINKNAASG

a score=42 EG=1e+05 E=0.051
s Q2LCP8 252  39 + 491 TLMVLINLYQNLIIYTNAIMFTNGLIILILVTL-VVGTIG
s S1_40   57 116 - 579 TLAGRIYSYVSIIGHFSFLVFATYLLILFPLTL/IVGSRG

a score=36 EG=7.6e+05 E=0.38
s Q2LCP8 88  53 + 491 MIIKMFEEGVTEGKKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISS
s S1_40   3 159 - 579 ILLSLVIGAVTCFRRLPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTLSS

a score=38 EG=3.9e+05 E=0.23
s Q2LCP8 422 28 + 491 GVMIYYMNLVKIIIIDK-VQTHEQGVAEL
s S1_54  177 87 + 662 GAMMLQAPQVALIVDDEFIQTHTVGFDEL

a score=36 EG=7.6e+05 E=0.44
s Q2LCP8 183 11 + 491 STGSLMYTDLL
s S1_54   23 33 + 662 STGTLAWSDLL

a score=36 EG=7.6e+05 E=0.44
s Q2LCP8 254 10 + 491 MVLINLYQNL
s S1_54    7 30 + 662 MIAINLYRNV

a score=37 EG=5.4e+05 E=0.2
s Q2LCP8 251  50 + 491 VTLMVLINLYQNLIIYTNAIMFTNGLIILILVTLVVGTIGSLRQQKLIRF
s S1_61   95 150 + 442 ITLSGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAF

a score=43 EG=7.6e+04 E=0.03
s Q2LCP8 205  72 + 491 IQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKLVTLMVLINLYQNLIIYTNAIMFTNGL
s S1_67  215 207 - 496 LELAISSVVLAVIIGLIGA---GGKLSQNRLSGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNTVTEAMGV

a score=37 EG=5.4e+05 E=0.21
s Q2LCP8 197 24 + 491 MENTDDYRIQMGIALIVLGLILKL
s S1_68  178 72 + 460 LDSTADYPQQPGVVLIKVPKTLAL

a score=44 EG=5.4e+04 E=0.025
s Q2LCP8 389 27 + 491 PPMTNFISKILILLPYMVLGRV-YLTML
s S1_80  199 80 - 550 PPTARFVAEYSIQLSYGCIGKI/YLLLI

a score=41 EG=1.5e+05 E=0.039
s Q2LCP8 437 21 + 491 DKVQTHEQGVAELEITSKPTK
s S1_85  153 63 + 361 DSVKSSQLTRARLEVISTPTK

a score=42 EG=1e+05 E=0.028
s Q2LCP8 204  47 + 491 RIQMGIALIVLGLILKLGI-APFHGWLIDVYEGAGMLMTFYLTITQKL
s S1_85   34 142 - 361 RCRTGLTAVVVGVMFLLVM\SSHRGGMVPPYATAGALIFVGVLMTSSL

a score=56 EG=1e+03 E=0.0003
s Q2LCP8 395  44 + 491 ISKILILLPYMVLGRVYLTMLAFFLSVGVM-IYYMNLVKIIIIDK
s S1_91   49 131 - 418 ISRFRIVTPGLIYAREYLLLSFWYVSVGII/MLRQFICRIIFIHK

a score=37 EG=5.4e+05 E=0.31
s Q2LCP8  44 14 + 491 LKLTLIVIMIVIGI
s S1_93  119 42 - 650 LKAILVMIMVVIAL

a score=38 EG=3.9e+05 E=0.12
s Q2LCP8  55 21 + 491 IGIEESIYVKLNGHLIKTELI
s S1_98  258 63 - 401 IGIVREVIVQLNNHRFTGSLL

a score=41 EG=1.5e+05 E=0.077
s Q2LCP8 344 15 + 491 SLIMGFLRLNDRGTI
s S1_99  437 45 + 621 TLTMGFMPVNPRATI

# Query sequences=100 normal letters=45801

TEST lastal -Q1 -pBL62codon.mat -F12 -t3.08611 -e36 -d29 /tmp/last-test sd-ccs-100.fq
lastal: quality data not used for DNA-versus-protein alignment
#
# a=11 b=2 A=11 B=2 F=12 e=36 d=29 x=35 y=31 z=35 D=1e+06
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=492
#
#   GCT GCC GCA GCG CGT CGC CGA CGG AGA AGG AAT AAC GAT GAC TGT TGC CAA CAG GAA GAG GGT GGC GGA GGG CAT CAC ATT ATC ATA TTA TTG CTT CTC CTA CTG AAA AAG ATG TTT TTC CCT CCC CCA CCG TCT TCC TCA TCG AGT AGC ACT ACC ACA ACG TGG TAT TAC GTT GTC GTA GTG TAA TAG TGA
# A   4   4   4   4  -1  -1  -1  -1  -1  -1  -2  -2  -2  -2   0   0  -1  -1  -1  -1   0   0   0   0  -2  -2  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -2  -2  -1  -1  -1  -1   1   1   1   1   1   1   0   0   0   0  -3  -2  -2   0   0   0   0  -4  -4  -4
# R  -1  -1  -1  -1   5   5   5   5   5   5   0   0  -2  -2  -3  -3   1   1   0   0  -2  -2  -2  -2   0   0  -3  -3  -3  -2  -2  -2  -2  -2  -2   2   2  -1  -3  -3  -2  -2  -2  -2  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -3  -2  -2  -3  -3  -3  -3  -4  -4  -4
# N  -2  -2  -2  -2   0   0   0   0   0   0   6   6   1   1  -3  -3   0   0   0   0   0   0   0   0   1   1  -3  -3  -3  -3  -3  -3  -3  -3  -3   0   0  -2  -3  -3  -2  -2  -2  -2   1   1   1   1   1   1   0   0   0   0  -4  -2  -2  -3  -3  -3  -3  -4  -4  -4
# D  -2  -2  -2  -2  -2  -2  -2  -2  -2  -2   1   1   6   6  -3  -3   0   0   2   2  -1  -1  -1  -1  -1  -1  -3  -3  -3  -4  -4  -4  -4  -4  -4  -1  -1  -3  -3  -3  -1  -1  -1  -1   0   0   0   0   0   0  -1  -1  -1  -1  -4  -3  -3  -3  -3  -3  -3  -4  -4  -4
# C   0   0   0   0  -3  -3  -3  -3  -3  -3  -3  -3  -3  -3   9   9  -3  -3  -4  -4  -3  -3  -3  -3  -3  -3  -1  -1  -1  -1  -1  -1  -1  -1  -1  -3  -3  -1  -2  -2  -3  -3  -3  -3  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -2  -2  -2  -1  -1  -1  -1  -4  -4  -4
# Q  -1  -1  -1  -1   1   1   1   1   1   1   0   0   0   0  -3  -3   5   5   2   2  -2  -2  -2  -2   0   0  -3  -3  -3  -2  -2  -2  -2  -2  -2   1   1   0  -3  -3  -1  -1  -1  -1   0   0   0   0   0   0  -1  -1  -1  -1  -2  -1  -1  -2  -2  -2  -2  -4  -4  -4
# E  -1  -1  -1  -1   0   0   0   0   0   0   0   0   2   2  -4  -4   2   2   5   5  -2  -2  -2  -2   0   0  -3  -3  -3  -3  -3  -3  -3  -3  -3   1   1  -2  -3  -3  -1  -1  -1  -1   0   0   0   0   0   0  -1  -1  -1  -1  -3  -2  -2  -2  -2  -2  -2  -4  -4  -4
# G   0   0   0   0  -2  -2  -2  -2  -2  -2   0   0  -1  -1  -3  -3  -2  -2  -2  -2   6   6   6   6  -2  -2  -4  -4  -4  -4  -4  -4  -4  -4  -4  -2  -2  -3  -3  -3  -2  -2  -2  -2   0   0   0   0   0   0  -2  -2  -2  -2  -2  -3  -3  -3  -3  -3  -3  -4  -4  -4
# H  -2  -2  -2  -2   0   0   0   0   0   0   1   1  -1  -1  -3  -3   0   0   0   0  -2  -2  -2  -2   8   8  -3  -3  -3  -3  -3  -3  -3  -3  -3  -1  -1  -2  -1  -1  -2  -2  -2  -2  -1  -1  -1  -1  -1  -1  -2  -2  -2  -2  -2   2   2  -3  -3  -3  -3  -4  -4  -4
# I  -1  -1  -1  -1  -3  -3  -3  -3  -3  -3  -3  -3  -3  -3  -1  -1  -3  -3  -3  -3  -4  -4  -4  -4  -3  -3   4   4   4   2   2   2   2   2   2  -3  -3   1   0   0  -3  -3  -3  -3  -2  -2  -2  -2  -2  -2  -1  -1  -1  -1  -3  -1  -1   3   3   3   3  -4  -4  -4
# L  -1  -1  -1  -1  -2  -2  -2  -2  -2  -2  -3  -3  -4  -4  -1  -1  -2  -2  -3  -3  -4  -4  -4  -4  -3  -3   2   2   2   4   4   4   4   4   4  -2  -2   2   0   0  -3  -3  -3  -3  -2  -2  -2  -2  -2  -2  -1  -1  -1  -1  -2  -1  -1   1   1   1   1  -4  -4  -4
# K  -1  -1  -1  -1   2   2   2   2   2   2   0   0  -1  -1  -3  -3   1   1   1   1  -2  -2  -2  -2  -1  -1  -3  -3  -3  -2  -2  -2  -2  -2  -2   5   5  -1  -3  -3  -1  -1  -1  -1   0   0   0   0   0   0  -1  -1  -1  -1  -3  -2  -2  -2  -2  -2  -2  -4  -4  -4
# M  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -2  -2  -3  -3  -1  -1   0   0  -2  -2  -3  -3  -3  -3  -2  -2   1   1   1   2   2   2   2   2   2  -1  -1   5   0   0  -2  -2  -2  -2  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1   1   1   1   1  -4  -4  -4
# F  -2  -2  -2  -2  -3  -3  -3  -3  -3  -3  -3  -3  -3  -3  -2  -2  -3  -3  -3  -3  -3  -3  -3  -3  -1  -1   0   0   0   0   0   0   0   0   0  -3  -3   0   6   6  -4  -4  -4  -4  -2  -2  -2  -2  -2  -2  -2  -2  -2  -2   1   3   3  -1  -1  -1  -1  -4  -4  -4
# P  -1  -1  -1  -1  -2  -2  -2  -2  -2  -2  -2  -2  -1  -1  -3  -3  -1  -1  -1  -1  -2  -2  -2  -2  -2  -2  -3  -3  -3  -3  -3  -3  -3  -3  -3  -1  -1  -2  -4  -4   7   7   7   7  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -4  -3  -3  -2  -2  -2  -2  -4  -4  -4
# S   1   1   1   1  -1  -1  -1  -1  -1  -1   1   1   0   0  -1  -1   0   0   0   0   0   0   0   0  -1  -1  -2  -2  -2  -2  -2  -2  -2  -2  -2   0   0  -1  -2  -2  -1  -1  -1  -1   4   4   4   4   4   4   1   1   1   1  -3  -2  -2  -2  -2  -2  -2  -4  -4  -4
# T   0   0   0   0  -1  -1  -1  -1  -1  -1   0   0  -1  -1  -1  -1  -1  -1  -1  -1  -2  -2  -2  -2  -2  -2  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -2  -2  -1  -1  -1  -1   1   1   1   1   1   1   5   5   5   5  -2  -2  -2   0   0   0   0  -4  -4  -4
# W  -3  -3  -3  -3  -3  -3  -3  -3  -3  -3  -4  -4  -4  -4  -2  -2  -2  -2  -3  -3  -2  -2  -2  -2  -2  -2  -3  -3  -3  -2  -2  -2  -2  -2  -2  -3  -3  -1   1   1  -4  -4  -4  -4  -3  -3  -3  -3  -3  -3  -2  -2  -2  -2  11   2   2  -3  -3  -3  -3  -4  -4  -4
# Y  -2  -2  -2  -2  -2  -2  -2  -2  -2  -2  -2  -2  -3  -3  -2  -2  -1  -1  -2  -2  -3  -3  -3  -3   2   2  -1  -1  -1  -1  -1  -1  -1  -1  -1  -2  -2  -1   3   3  -3  -3  -3  -3  -2  -2  -2  -2  -2  -2  -2  -2  -2  -2   2   7   7  -1  -1  -1  -1  -4  -4  -4
# V   0   0   0   0  -3  -3  -3  -3  -3  -3  -3  -3  -3  -3  -1  -1  -2  -2  -2  -2  -3  -3  -3  -3  -3  -3   3   3   3   1   1   1   1   1   1  -2  -2   1  -1  -1  -2  -2  -2  -2  -2  -2  -2  -2  -2  -2   0   0   0   0  -3  -1  -1   4   4   4   4  -4  -4  -4
# B  -2  -2  -2  -2  -1  -1  -1  -1  -1  -1   4   4   4   4  -3  -3   0   0   1   1  -1  -1  -1  -1   0   0  -3  -3  -3  -4  -4  -4  -4  -4  -4   0   0  -3  -3  -3  -2  -2  -2  -2   0   0   0   0   0   0  -1  -1  -1  -1  -4  -3  -3  -3  -3  -3  -3  -4  -4  -4
# J  -1  -1  -1  -1  -2  -2  -2  -2  -2  -2  -3  -3  -3  -3  -1  -1  -2  -2  -3  -3  -4  -4  -4  -4  -3  -3   3   3   3   3   3   3   3   3   3  -3  -3   2   0   0  -3  -3  -3  -3  -2  -2  -2  -2  -2  -2  -1  -1  -1  -1  -2  -1  -1   2   2   2   2  -4  -4  -4
# Z  -1  -1  -1  -1   0   0   0   0   0   0   0   0   1   1  -3  -3   4   4   4   4  -2  -2  -2  -2   0   0  -3  -3  -3  -3  -3  -3  -3  -3  -3   1   1  -1  -3  -3  -1  -1  -1  -1   0   0   0   0   0   0  -1  -1  -1  -1  -2  -2  -2  -2  -2  -2  -2  -4  -4  -4
# X  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -4  -4  -4
# *  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4  -4   1   1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=48
s Q2LCP8 124 23 + 492 MetGluAlaHisAsnLeuIleThrLeuPheLeuSerLeuGluIleSerSerIleCysPheTyrIleLeu
s S1_1   360 69 - 743 ATGGGATTTCATAATATGCGTTAATTGTTCTTTtttatatctCTGAGGGAAATATGTTTCTGGATTATT
q S1_1                ~~C{@~ck~^~]Y~OW~k'S~pgfL}~G~cVj~FS~f<~u;RJ2=~kgoz~~a~lTPj@b~_U>{M;=*

a score=39
s Q2LCP8 394  34 + 492 PheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIleTyrTyr
s S1_1   395 102 - 743 tatatctCTGAGGGAAATATGTTTCTGGATTATTTTGCACTGGGAGTGCTTATTTTTGTATTTCTGGTGATATTCTATGGGATTATTATTTTAATGATATTC
q S1_1                 ~f<~u;RJ2=~kgoz~~a~lTPj@b~_U>{M;=*~fTLg~s]~~9TPO^~SL.~~J~~AS~L[t~~PlqF~~Yt~>EaMN.m~~O~W~E~Fdcpa{bYy}~U

a score=36
s Q2LCP8 14  42 + 492 SerIleTyrIleLeuProLeuIleIleLeuIleValLeuSerIleSerIleLysLys------AspValGlnArgValHisIleIleIleGlnSerLeuLysLeuthrleuilevalilemetilevalile
s S1_5   78 132 - 558 ACCATCACTCTTTTGAACCTAATCTTGCGTATACTCCTCTCATATCTGATAAGAGAAGTGATTATGGTTCAGCGTATTACTATTGCGCCGCAAGGCCCGAGTTTTCCCGTTTTGTATGGGCTACTGGCGATT
q S1_5                [~nom~w=~j~~l~~PU~~~~5W]~~P~~Ut~r{~~UGrFP~gm~~{ja~ia[p^Of~F~~K?~v1ZIH~~|~~Bo[~RQaI7]ZdX~TM~1nV~g~pj~~Hq{v`nEkAaV~t;qa\FRxqfXvQ~b2rD[

a score=37
s Q2LCP8 384 11 + 492 TyrLeuAlaGlyLeuProProMetThrAsnPhe
s S1_9   213 33 + 563 TACCTGGCTGCACTTCCGCCAGAGGCACGCTTT
q S1_9                ~P~Wp{cI~r~~B6~~~Ski~~;mzH`~~H~~\

a score=36
s Q2LCP8 136 23 + 492 LeuGluIleSerSerIleCysPheTyrIleLeuAlaLeuAsnLysAsnSerArgLysGlyIleGluGly
s S1_13  414 69 + 824 ATAACCATATCAACGGTGATGTTTCACATGTGTCGACTTAACCATGACAGCGTTCCTGTACTTCAGGGG
q S1_13               I.JR9M]V/896>@:4N@5I1C4;NK-<%AGI4@E/;2A@?=:@*I8<NB4)5&$CL-,L3M/%V:/9@

a score=40
s Q2LCP8 284 23 + 492 LeuValValGlyThrIleGlySerLeuArgGlnGlnLysLeuIleArgPheIleAlaTyrSerAlaIle
s S1_17  515 69 - 643 GTGTTGGTTGGTCGCAGCGGTTCAGGTAAAAGCTCACTGCTGACGCGCTTTCTGGTTTTCTCTCATATC
q S1_17               CA.93:7:1&=>C.7H;2=:6(H03EG6?2'6M2>KD6:D98191A6&T;,-7*;:0&538K5&%EQ%;

a score=39
s Q2LCP8 288 20 + 492 ThrIleGlySerLeuArgGlnGlnLysLeuIleArgPheIleAlaTyrSerAlaIleVal
s S1_19  408 60 + 552 ACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTA
q S1_19               ~Z~_~r~~\{^=~H|PJc?f[vhI~L~aOQxJnoZL~G~7q~~e=oz~~~RCG~S{z~?~

a score=38
s Q2LCP8  31 25 + 492 LysLysAspValGlnArgValHisIleIleIleGlnSerLeuLysLeuthrleuilevalilemetilevalile
s S1_19  417 75 + 552 AAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATT
q S1_19               {^=~H|PJc?f[vhI~L~aOQxJnoZL~G~7q~~e=oz~~~RCG~S{z~?~.~~o8Dj~0V~s~y~~~g~~~;~~

a score=42
s Q2LCP8 293  50 + 492 ArgGlnGlnLysLeuIleArgPheIleAlaTyrSerAlaIleValAsnSerAlaLeuLeuIleLeuMetLeuAlaGlySerMetSerGluGluLeuMetValAsnSerValTyrTyrLeuIleAsnTyrIleIleGlyLeuThrValLeu
s S1_20   20 150 + 484 CGACGCGAGAGGAAATACCGCTGCCAGGCTTGTAGCGCAACAACAAATTATGCAATCGCTCTTCTTCAATCGGTTTCGCCAGATAATCGCTCATCCCTGCGCCAAGCAGCTTTCTTTTTGCCCGGCCATTGCATGCGCCTTACCGCGATA
q S1_20                [SPs~x~PI~nr~~~~~kW1PCnK_TcYV~N`;L~u~mt~V~D~~~~fD~TZ~~T;9~^Ci[iZk4~DpYwuS~]EZB\c|slpK~`~fn@~~\<`^~V~Y~Cobfd~Zp~~~f[BSk?h<~P~;VFO:L~I@~gi3~.\T~FMOS;PmH

a score=38
s Q2LCP8 206 19 + 492 GlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaPro
s S1_24   77 57 - 251 GAAATTGGTGTCGCGGTAATCGACTGTGGCGGCACATTACGCTGCGGCATCTATCCG
q S1_24               cx;ou~~~_~YH,S?e~V6P~~~o3^UI>~~~5i~Fa~vSGXWpk~wl~R~L~sW~l

a score=39
s Q2LCP8  94 28 + 492 GluGluGlyValThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIleGlyMetLeu
s S1_26  118 84 + 786 GAGGAGGCTGTTCGCAATAGTGAAAAAATGTCGTTGAGTGACAGCGAACTTGATGCGGCATTTTATGCTGTAATCGTCATGCTT
q S1_26               ~m@~.~d}~=\~pen~F]~~~~dwIL~DtXMq~6Yv~mYv^cX~~v~~~yoe^~@W~uMm~]~~`O]Z~{~D~~~~Nl~~~=MC

a score=39
s Q2LCP8 323  39 + 492 GluLeuMetValAsnSerValTyrTyrLeuIleAsnTyrIleIleGlyLeuThrValLeuMetSerLeuIleMetGlyPheLeuArgLeuAsnAspArgGlyThrIleGluAspIle
s S1_26  297 117 + 786 GAGTTCTTTTTAAACTTGATAAATCATCGAATCGGGAAGTCAGCTGGATGGGTCTTTCTCCTGTGCCTGTTACTGGGTTTCAGAGGTAAATATTCCGTGGGTAGTAATGATGAAATC
q S1_26                4j}`>\hzbJy~_W8~F~XYA~[Fk8G~~oF~<qI~~aoFo~~~;~o~~w9~v_~~b~}_]rHN~WCbgdm2OO~T~?O~~3^ZaU-~<g~N;EL~LUMxhj{f~M~tT~O~~p~Ft

a score=36
s Q2LCP8  98  39 + 492 ThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIleGlyMet-LeuIleSerMetGluAlaHisAsnLeuIleThrLeuPheLeuSerLeu
s S1_26  483 116 + 786 ACTCAGGGAAAAAAAGTATAAATCATCGAGGCTTGGTTTCTATTTATTACTTGTGGTATTGTTGCTGTC/CTATTTTGTGGTTTTATCCATGATTTATATGAGATGATTTTATGCTTA
q S1_26                u}`X~M`SDC~~:~|u`{~~P~v~c~~gb~~3X~C~BUQ~]IwN~X~~~~~~RYwc9L~f~bUBZ]?Na/a>K~~~~q~lot<SoWZ~~^G`t~r~~~&w~Mh;~gv{7i~^B~tcA~

a score=40
s Q2LCP8 333 16 + 492 IleAsnTyrIleIleGlyLeuThrValLeuMetSerLeuIleMetGly
s S1_26  673 48 - 786 GTTAATTATATTCTTTCTAGTACTGTCGTAATCACTATATTCTTCGGG
q S1_26               ~cK~~o|M~{b~[~Pzv~~h7hP~~Z[yG~M~dtO~~R~L[~y~Dx~I

a score=42
s Q2LCP8 135 21 + 492 SerLeuGluIleSerSerIleCysPheTyrIleLeuAlaLeuAsnLysAsnSerArgLysGly
s S1_40   89 63 + 579 TCGGCCCAGATATACACCACATGCGAGGCGATAAAggcgataaaTAAGAATGCGGCCAGCGGG
q S1_40               i<eH~~`~~kSKWVG5)K0W=XD[~nKF%RbRLSXJ@I5|@YGTCJI(SLXa5~LdPTkA:Ve

a score=42
s Q2LCP8 252  39 + 492 thrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuValThrLeu-ValValGlyThrIleGly
s S1_40   57 116 - 579 ACGCTTGCTGGTCGCATTTATTCCTACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACTTTA/ATCGTCGGCTCCAGAGGC
q S1_40                <CGror?v4]3bdI\OB\4:UAI?@`MNQHdSKNZAeO6U>~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D?/?HBN-9:TX`^?QECQ';

a score=36
s Q2LCP8 88  53 + 492 MetIleIleLysMetPheGluGluGlyValThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIleGlyMetLeuIleSerMetGluAlaHisAsnLeuIleThrLeuPheLeuSerLeuGluIleSerSer
s S1_40   3 159 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTGCCGACAACGCTTGCTGGTCGCATTTATTCCTACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACTTTATCGTCG
q S1_40               P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScDMkG\Hp<CGror?v4]3bdI\OB\4:UAI?@`MNQHdSKNZAeO6U>~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D?HBN-9:

a score=36
s Q2LCP8 309 22 + 492 SerAlaLeuLeuIleLeuMetLeuAlaGlySerMetSerGluGluLeuMetValAsnSerValTyr
s S1_50   85 66 - 262 TCCGTTTGGTTTATTTTGCTCATCATAAGCCCCATGGCAGATGACATTTTGGTTACTGCAGAATAT
q S1_50               <SL;-.;2KW<-=IG?X.Q=4?(G.7;2ECE>6EnQIX3E=/MSL,-\OLQ>:FJ;,4^D9>>:P>

a score=38
s Q2LCP8 422 28 + 492 GlyValMetIleTyrTyrMetAsnLeuValLysIleIleIleIleAspLys---ValGlnThrHisGluGlnGlyValAlaGluLeu
s S1_54  177 87 + 662 GGCGCGATGATGCTGCAAGCGCCGCAGGTCGCCCTCATTGTGGATGACGAATTTATTCAAACGCATACCGTCGGCTTTGACGAGCTA
q S1_54               )7=3354<2*3-3>=0/7.*F96,@71%BF*'6/64&504<.,.+)*%?3,=7,1D$$JCG*&55&4%&&M?0,5'1*1.(94)&((

a score=36
s Q2LCP8 183 11 + 492 SerThrGlySerLeuMetTyrThrAspLeuLeu
s S1_54   23 33 + 662 TCTACAGGAACGTTGGCCTGGAGCGATTTACTG
q S1_54               8/'67860,)-)'./:/'*C<'/11@'007/)'

a score=36
s Q2LCP8 254 10 + 492 metvalleuileasnleutyrglnasnleu
s S1_54    7 30 + 662 ATGATCGCCATCAATCTCTACAGGAACGTT
q S1_54               7&-').206&(+B)+58/'67860,)-)'.

a score=37
s Q2LCP8 251  50 + 492 valthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGlnLysLeuIleArgPhe
s S1_61   95 150 + 442 ATAACGCTTTCTGGGATTATTGCCGTTGGTATGACCTTTGTGATCCTCTCTGGCGGTATCGATCTCTCCGTCGGTTCGGTGATCGCTTTTACCGGCGTGTTTCTGGCAAAAGTGATTGGCGACTTCGGCCTCTCGCCGTTGCTGGCATTT
q S1_61                \~Mb.~~y[Sn~~;l@~@bm3N_H9x?~~8~W~~hpaZ~l[Y~~^k~~tHla[}m_C`=:cs[~Ysnj~Z25w0~+Y~(~~YYA~wf~1X~Q~~~~amhD~jHUX3Uux:X`H`g}3~n~,S~~~~|RFJ[~{T,~V;G~~c?-~n~~g.

a score=43
s Q2LCP8 205  72 + 492 IleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaProPheHisGlyTrpLeuIleAspValTyrGluGlyAlaGlyMetLeuMetThrPheTyrLeuThrIleThrGlnLysleuvalthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleu
s S1_67  215 207 - 496 CTGGAGCTGGCTATCAGCTCTGTAGTGCTCGCTGTAATCATCGGTTTAATTGGCGCT---------GGCGGTAAGCTCTCGCAAAATCGGCTTTCGGGGCTGATTTTCGAAGGGTACACCACGCTGATTCGAGGCGTGCCGGACTTGGTGTTGATGCTGCTGATTTTCTACGGTTTGCAGATTGCACTAAACACGGTGACGGAGGCGATGGGCGTC
q S1_67                cT+aPL7Z~5W@:.E>SIT@KIq~I<`_D0f*GS{kc*E]~T>@N?VV~=WMC\OY;---------\?B~@IP3te1G^O^ICV:A]~bv~~yg3Ku]Br`:c~CQ2RWWPI@)t<N5F3BJ<a{H;DAI6a:P}^<^FPIOOGg27[7>=ONfTx8/=bAo7\VN[YFj*E~KOJ@yOU^H>n~Q^W3UYjPW'~98{DqTgjMUwWMJJ:JY9F

a score=37
s Q2LCP8 197 24 + 492 MetGluAsnThrAspAspTyrArgIleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeu
s S1_68  178 72 + 460 CTCGACAGCACCGCCGACTACCCGCAACAGCCGGGTGTGGTGCTGATCAAAGTGCCGAAAACACTGGCATTG
q S1_68               ~J{4P~MPxQU~{I~Oc~R~N~c~^g~y~0~~LS~K~~^h~wJdo~c~~z|~T~oa[V;[WwGS~~`~jn~V

a score=44
s Q2LCP8 389 27 + 492 ProProMetThrAsnPheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgVal-TyrLeuThrMetLeu
s S1_80  199 80 - 550 CCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAATT/TATTTACTGCTGATA
q S1_80               ]RNv~v:~r~cJO~Us~Pq|~7~]~D:m}~`~i~~~8\~d~~~~MUSCrmKiV~YfbYH~~~_k~{/{buwAnE~~rX~~KB

a score=41
s Q2LCP8 437 21 + 492 AspLysValGlnThrHisGluGlnGlyValAlaGluLeuGluIleThrSerLysProThrLys
s S1_85  153 63 + 361 GATTCGGTAAAATCATCCCAGTTAACGCGCGCCAGGCTCGAAGTCATCAGCACGCCAACAAAG
q S1_85               {:V>0J^U[P\4D>QA?C@]>9U54CBM='SK;)+OKoHe/X0I9^.IPD^C1O*;HD><E6%

a score=42
s Q2LCP8 204  47 + 492 ArgIleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIle-AlaProPheHisGlyTrpLeuIleAspValTyrGluGlyAlaGlyMetLeuMetThrPheTyrLeuThrIleThrGlnLysleu
s S1_85   34 142 - 361 CGGTGTCGCACGGGGCTGACTGCGGTTGTGGTTGGCGTTATGTTCCTGTTAGTTATGTTCTTCTCACCGTGGTGGGATGGTTCCTCCTTACGCAACCGCCGGAGCGTTAATCTTTGTTGGCGTGCTGATGACTTCGAGCCTG
q S1_85                Y.:52@aMF</h)Z2H?fW(@;2HG1F<@N4KFT[+C9IH_VS@2TO>36ZSL&K^<BSNR<ADo:@Y=@AC>H;O<E0=2YPP<7/G<1c:%RO.az-BLSUGeN;y@87%6E<>DH;*O1C^DPI.^9I0X/eHoKO+);

a score=56
s Q2LCP8 395  44 + 492 IleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMet-IleTyrTyrMetAsnLeuValLysIleIleIleIleAspLys
s S1_91   49 131 - 418 ATTTCTCGCTTCAGAATAGTAACTCCCGGGTTGATTTATGCTCGGGAATATTTGTTGTTGAGTTTTTGGTATGTTTCTGTTGGTATAATA/ATGTTGCGGCAATTTATTTGCCGCATAATTTTTATTCATAAA
q S1_91                V1;>H>JC6:C2B%EC5?6CB~LCC4P.aK/SO:EA3Oi@HC]`GD8,PHJ<8+4$G*<);42516B.,K*6:6--I)IQTE3JK0&DCE/E7/):.(15?7<I0G~?89A*D,9)IB>IL>CT=%2Me9LG.

a score=37
s Q2LCP8  44 14 + 492 LeuLysLeuthrleuilevalilemetilevalileGlyIle
s S1_93  119 42 - 650 CTCAAAGCCATCCTGGTGATGATTATGGTGGTCATTGCGCTG
q S1_93               ?_sI~R_lA`PhDjXLL>'am3:HU<5[<JQ6aVXJTCFK_~

a score=38
s Q2LCP8  55 21 + 492 ileGlyIleGluGluSerIleTyrValLysLeuAsnGlyHisLeuIleLysThrGluLeuIle
s S1_98  258 63 - 401 ATCGGCATAGTGAGAGAGGTTATTGTCCAGCTCAACAATCATCGCTTCACTGGCTCCCTTTTG
q S1_98               cJh3>W@3~THK~As~IS~J[DET_\~F~i~aAO~8m:D~~;p~~]L~GE9?~~oird]ra~}

a score=41
s Q2LCP8 344 15 + 492 SerLeuIleMetGlyPheLeuArgLeuAsnAspArgGlyThrIle
s S1_99  437 45 + 621 ACCCTGACGATGGGTTTCATGCCTGTAAATCCCCGGGCCACCATT
q S1_99               BE>R;B61+*C9,QB%C[BJ?EL2HT;JEa48D4H-:*J=CaMHO

# Query sequences=100 normal letters=45801

TEST lastal -Q1 -pbadcodon.mat -a17 -F0 -j4 -X1 -D1000 /tmp/last-test sd-ccs-100.fq
lastal: quality data not used for DNA-versus-protein alignment
#
# a=17 b=2 A=17 B=2 F=0 e=56 d=45 x=55 y=43 z=55 D=1000 E=9.46738e+11
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.34294 j=4 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=492
# lambda=0.215571 K=0.165586
#
#   GCC GCG GCA GCT TGC TGT GAC GAT GAG GAA TTC TTT GGC GGT GGA GGG CAC CAT ATC ATT ATA AAG AAA TTG TTA CTT CTA CTC CTG ATG AAC AAT CCC CCG CCA CCT CAG CAA AGG AGA CGG CGC CGT CGA TCC AGC TCG TCA TCT AGT ACC ACT ACA ACG GTC GTG GTT GTA TGG TAC TAT TAG TGA TAA
# A   9   7   8   9  -9  -9  -1  -1  -5  -3  -4  -5  -1  -1  -2  -4  -9 -10   0   0  -1  -9  -7  -7  -5  -6  -6  -5  -9  -3  -5  -5  -1  -3  -2  -1 -14 -11  -8  -7 -13  -9  -9 -10   0  -5  -1   0   0  -5   5   4   4   3   5   1   5   4 -12  -8  -9 -11  -9  -9
# C -10 -17 -17 -10  12  12  -5  -5 -14 -13   1   1   0   1  -7  -8   1   1  -8  -8 -15 -13 -12  -7  -5  -4 -11  -4 -13 -16  -4  -4  -5 -12 -12  -5  -8  -6  -7  -6  -2   7   7   0   0   1  -6  -6   0   2  -9  -9 -16 -16  -9 -17  -9 -16   4   7   7  -1   6   0
# D   0  -7  -6   0  -3  -2   9   9   0   1  -8  -8   5   6  -2  -3   1   1  -3  -3 -10  -4  -3 -16 -14  -9 -16  -9 -18 -12   5   5 -10 -17 -16 -10  -9  -7  -7  -6 -12  -3  -3 -10  -9   1 -15 -15  -9   1  -4  -4 -11 -11   1  -7   2  -6 -10   2   2  -6  -9  -4
# E  -8   2   1  -7 -11 -10   1   2   9   9 -16 -15  -3  -2   5   5  -7  -6 -12 -11  -3   4   4  -7  -7 -16  -8 -17  -9  -3  -3  -2 -18  -8  -9 -17   0   0   1   1  -4 -12 -10  -3 -17  -8  -7  -8 -16  -6 -12 -11  -4  -3  -7   1  -6   2  -2  -6  -5   2  -1   3
# F  -5 -12 -12  -5   2   2 -10 -10 -19 -18  10  10 -10  -9 -17 -18  -3  -3   1   1  -6 -18 -16   2   4   5  -2   5  -4  -7  -8  -9   0  -7  -7   0 -13 -11 -17 -16 -12  -3  -3 -10   5  -9  -1  -1   5  -9  -4  -4 -11 -11   0  -8   0  -7  -6   2   2  -6  -4  -4
# G  -2  -1  -1  -3   1   0   3   2   2   2 -10 -11   9   8   8   8  -5  -6  -5  -6  -5  -2  -2 -10  -9 -11 -10 -11 -12  -6  -1  -2 -12 -11 -11 -12  -7  -6   4   4  -1   0   0   0 -11   4  -9 -10 -12   3  -6  -7  -6  -5  -1  -1  -1   0   1  -4  -5  -4   2  -3
# H -10 -17 -17 -10   2   2  -1  -1 -10  -9  -3  -3  -5  -5 -12 -13  11  11  -8  -8 -15  -9  -8 -11  -9   1  -5   2  -8 -16   1   0   1  -7  -6   0   1   3 -12 -11  -2   7   7   0  -4  -4 -10 -10  -4  -4  -9  -9 -16 -16  -9 -17  -9 -16  -6   7   6  -1  -4   0
# I  -1  -6  -4  -1  -8  -8  -6  -6 -13  -9   0   0  -6  -5  -9 -12  -9  -9   9   9   7  -7  -4  -5  -2   0  -3   0  -7   3   0   0  -6 -11  -8  -6 -16 -12  -7  -3 -15  -9  -8 -11  -5  -1  -9  -7  -5   0   4   4   2  -1   4  -2   4   2 -14  -8  -8 -14 -10 -10
# K -14  -4  -5 -12 -11 -10  -4  -3   3   3 -16 -15  -9  -7   0   0  -7  -6  -7  -6   1   9   9  -7  -7 -16  -8 -17  -9   1   1   2 -18  -8  -9 -17   0   0   5   5  -4 -12 -10  -3 -17  -3  -7  -8 -16  -2  -8  -7   0   2 -12  -4 -11  -4  -2  -6  -5   2  -1   3
# L  -9  -4  -7  -9  -6  -5 -13 -13 -11 -13   3   3 -13 -13 -12 -10  -2  -2  -3  -3  -1 -10 -12   8   7   7   7   7   8   0 -12 -12   2   5   2   1  -1  -2  -9 -11   0  -2  -1  -1  -2 -12   4   1  -2 -12  -8  -8  -6  -3  -3  -1  -3  -2  -1  -5  -5  -1  -2  -2
# M  -9   3  -2  -8 -16 -15 -13 -12  -4  -8  -7  -6 -13 -12  -8  -3 -16 -15   2   3   8   1  -3   3   0  -7  -2  -8   1  12  -8  -7 -13  -2  -7 -12  -8 -11   2  -2  -7 -16 -15 -10 -12  -8   0  -6 -11  -7  -4  -2   3   8  -3   6  -2   3  -5 -15 -14  -5  -9  -9
# N  -5 -12 -12  -5  -3  -2   4   4  -5  -4  -8  -8   0   0  -8  -9   1   1   1   1  -6   0   1 -16 -14  -9 -16  -9 -18  -7   9   9 -10 -17 -16 -10  -9  -7  -3  -2 -12  -3  -3 -10  -9   5 -15 -15  -9   5   0   0  -7  -7  -4 -13  -4 -11 -10   2   2  -6  -9  -4
# P  -2  -3  -1  -1  -4  -4 -11 -11 -15 -13   0   0 -12 -11 -12 -14   0   0  -5  -5  -5 -14 -11  -2   0   5   4   4   1  -8 -10 -10   9   7   9   9  -4   0 -13 -11  -3   0   1   0   4 -11   4   5   5 -10  -1   0   0  -2  -6  -9  -6  -6  -6  -4  -4  -6  -3  -3
# Q -18  -8 -10 -17  -6  -5  -9  -8  -1  -2 -11 -10 -13 -12  -6  -4   3   4 -16 -15  -8   1  -1  -2  -3  -6   1  -7   2  -7  -8  -7  -8   2   0  -7  11  10  -3  -5   7  -1   0   6 -12 -12  -1  -4 -11 -11 -17 -16  -9  -7 -17  -8 -16  -9   3  -2  -1   8   3   7
# R -13  -6  -7 -13   3   2  -8  -8  -4  -3  -8  -8  -2  -2   3   3   2   1  -9  -8  -1   1   2  -5  -5  -4  -2  -3  -3  -2  -4  -4  -4  -2  -3  -5   2   2   7   7   8   7   7   8  -9   1  -5  -6  -9   1 -10  -9  -2  -2 -12  -7 -12  -6   5  -2  -3   0   6   0
# S  -3  -5  -4  -2   1   1  -3  -4 -12 -10   2   2   1   1  -6  -7  -4  -4  -1  -2  -5  -7  -6  -1   2  -2  -3  -2  -7  -8   2   1   2  -1   1   2 -10  -7  -2  -1  -8   0  -1  -5   7   7   5   7   7   6   0   0  -2  -3  -5 -10  -5  -7  -3   0  -1  -4  -1  -1
# T   3   2   3   3  -9  -9  -7  -7 -10  -8  -5  -5  -7  -7  -7  -9 -10 -10   4   4   4  -5  -2  -7  -4  -6  -6  -6  -9   1  -1  -1  -1  -3  -1  -1 -14 -10  -4  -2 -13 -10 -10 -10   0  -2  -1   0   0  -2   8   8   9   7  -1  -4  -1  -1 -11  -9  -9 -11  -8  -8
# V   2   5   3   2 -10 -10  -2  -2  -1  -3  -2  -2  -2  -2  -3  -1 -11 -11   3   3   3  -6  -7   1  -1  -2  -2  -3  -1   5  -7  -7  -8  -5  -7  -8 -10 -11  -5  -7 -10 -11 -10 -11  -7  -7  -3  -6  -7  -7  -2  -2  -2   1   7   9   8   8  -8 -10 -10  -8  -9  -9
# W -18  -7 -12 -17   3   5 -13 -12  -4  -8  -7  -6  -8  -7  -2   2  -7  -6 -16 -15 -10  -3  -7   3   0 -11  -6 -12  -3  -6 -12 -11 -13  -2  -7 -12   2  -1   3  -1   8  -1   0   5  -8  -7   4  -1  -7  -6 -17 -16 -11  -6 -17  -7 -16 -11  14  -2  -1   9  11   5
# Y -10 -17 -17 -10   6   6  -1  -1 -10  -9   1   1  -5  -5 -12 -13   6   6  -8  -8 -15  -9  -8  -7  -5  -4 -11  -4 -13 -16   1   0  -5 -12 -12  -5  -4  -2 -12 -11  -7   2   2  -6   0  -4  -6  -6   0  -4  -9  -9 -16 -16  -9 -17  -9 -16  -2  11  11   3   0   5
# * -18 -10  -8 -17   2   3 -11 -10  -4  -2  -7  -6 -10  -8   0  -4  -4  -3 -16 -15  -6  -3  -1   0   3 -11  -2 -12  -6 -10  -9  -8 -13  -5  -3 -12   2   4  -3   1   2  -3  -2   7  -8  -9   0   2  -7  -8 -17 -16  -7  -9 -17 -11 -16  -7   8   1   2   9  13  11
# X   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=59 EG=4.7e+05 E=0.24 fullScore=69.8
s Q2LCP8 405 14 + 492 MetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePhe
s S1_5   472 42 + 558 GTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTC
q S1_5                =w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt
p                     """######%%%&&&,,,///666999>>>~~~~~~///+++

a score=72 EG=2.8e+04 E=0.01 fullScore=85.5
s Q2LCP8 426 15 + 492 TyrTyrMetAsnLeuValLysIleIleIleIleAspLysValGln
s S1_8    93 45 + 438 CGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAG
q S1_8                U;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E3<L4H?
p                     ###%%%'''(((///333666~~~~~~CCCDDD???777333...

a score=59 EG=4.7e+05 E=0.24 fullScore=69.7
s Q2LCP8 383 12 + 492 MetTyrLeuAlaGlyLeuProProMetThrAsnPhe
s S1_9   210 36 + 563 ACATACCTGGCTGCACTTCCGCCAGAGGCACGCTTT
q S1_9                <~M~P~Wp{cI~r~~B6~~~Ski~~;mzH`~~H~~\
p                     '''~~~~~~~~~???===999333+++***((('''

a score=64 EG=1.6e+05 E=0.092 fullScore=77
s Q2LCP8 204 25 + 492 ArgIleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaProPheHisGlyTrp
s S1_17  388 72 - 643 CGCGGTGAGACGGAAATAGCATCGACCGATCCGGGACCA---TTGAGGCCGAGGATCTGTTTATCACGTCGCCGG
q S1_17               =7ACG23;8K*[O82;T89K==8,>9>=O&?6':;88NK---MWF4<PN?-7O\:;[)?=>U*=B9E??a^T,A_
p                     $$$%%%'''...222~~~~~~DDD@@@;;;:::777***))),,,000000///---''''''&&&&&&%%%$$$

a score=56 EG=9e+05 E=0.45 fullScore=68.3
s Q2LCP8  13 18 + 492 TyrSerIleTyrIleLeuPro------LeuIleIleLeuIleValLeuSerIleSerIle
s S1_19  323 60 - 552 TACTTAATCCCCATTCTGCCCCCGCGGTTACGCTTTCTTATCTATTTTTCAATCAGCACT
q S1_19               OnoBv^~~Dn~S~+{Zj~~Ksboh{.~~Xw~[~NP~UpQ~~~~~~~w[[j~E~m~|~\WN
p                     +++...111222~~~~~~~~~###(((###%%%''')))******+++++++++)))&&&

a score=61 EG=3e+05 E=0.14 fullScore=68
s Q2LCP8 276 16 + 492 leuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySer
s S1_21  109 48 - 510 CTGGTATTGGTGATTCTGACCATGCTGGCGGCAGTCACGACCGGTTCA
q S1_21               8~d)A5S']cqHE\N[;@+Sc~<U~9FsHJX6'~_@Y29FLM<WhAYp
p                     $$$$$$%%%'''~~~~~~999999>>>;;;888666555222...'''

a score=59 EG=4.7e+05 E=0.21 fullScore=68.5
s Q2LCP8 404 13 + 492 TyrMetValLeuGlyArgValTyrLeuThrMetLeuAla
s S1_21  100 39 - 510 CACCTGATGCTGGTATTGGTGATTCTGACCATGCTGGCG
q S1_21               Ab~2M/?7;8~d)A5S']cqHE\N[;@+Sc~<U~9FsHJ
p                     &&&(((+++,,,------000111~~~~~~~~~~~~~~~

a score=61 EG=3e+05 E=0.22 fullScore=80.6
s Q2LCP8  98 21 + 492 ThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIle
s S1_26  483 63 + 786 ACTCAGGGAAAAAAAGTATAAATCATCGAGGCTTGGTTTCTATTTATTACTTGTGGTATTGTT
q S1_26               u}`X~M`SDC~~:~|u`{~~P~v~c~~gb~~3X~C~BUQ~]IwN~X~~~~~~RYwc9L~f~bU
p                     +++...~~~~~~~~~???>>>888333,,,+++,,,+++******)))''''''''''''&&&

a score=62 EG=2.5e+05 E=0.18 fullScore=77.5
s Q2LCP8 266 17 + 492 tyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuVal
s S1_26  644 51 - 786 TTCACTATTGCGAACAGCCTCCTCAACAGGTTAATTATATTCTTTCTAGTA
q S1_26               wd~~~~]F~nep~\=~}d~.~@m~X~yMF~cK~~o|M~{b~[~Pzv~~h7h
p                     $$$'''((())))))))),,,---444999~~~~~~~~~333///---)))

a score=67 EG=8.3e+04 E=0.043 fullScore=77.7
s Q2LCP8 250  35 + 492 leuvalthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuValThrLeu
s S1_40   51 105 - 579 CCGACAACGCTTGCTGGTCGCATTTATTCCTACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACTTTA
q S1_40                MkG\Hp<CGror?v4]3bdI\OB\4:UAI?@`MNQHdSKNZAeO6U>~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D?
p                      %%%(((~~~~~~666666:::@@@===;;;<<<666777222222222777666777444444:::>>>666444444444000111111000///---,,,(((

a score=63 EG=2e+05 E=0.1 fullScore=78.2
s Q2LCP8 271 27 + 492 metphethrasnglyleuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGlnLysLeu
s S1_40  327 69 - 579 ATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAA---CTGGTGTTTGCGACG---------TGGAGCTGGCAAAAGCTG
q S1_40               ^RJrHiP~l5eVT:Q\OQjqNK?M&JG8P_~k=mG[---B\L?OY4tXC:u.\Y---------DJ5H;rW=[RGacq~@,>
p                     ~~~~~~BBB@@@<<<;;;666333,,,%%%$$$######((('''&&&%%%$$$%%%$$$$$$$$$%%%'''(((((('''

a score=60 EG=3.8e+05 E=0.2 fullScore=74.5
s Q2LCP8 280 16 + 492 IleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGln
s S1_40    3 48 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTG
q S1_40               P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScD
p                     ~~~~~~======AAAAAA>>><<<444///---,,,,,,+++)))&&&

a score=66 EG=1e+05 E=0.053 fullScore=80.3
s Q2LCP8 384 31 + 492 TyrLeuAlaGlyLeuProProMetThrAsnPheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMet
s S1_55  247 93 - 578 TGCTTTTTCTGCGTTCATTCAATGTCGAATGCGATGTTGACACGTCTTAtccttcaatgtcggatgcgacgctgccgcgtctATCCGACCACG
q S1_55               325GA,4&47/FN+J9.6?*1S0L-?2<80+>@7>@AJX??)L5*>&)+ME:A9;:.&>&?=-%HAR'5)Z1-7;&8(6B,1M59B(,8%'LW
p                     $$$$$$%%%%%%&&&(((,,,/////////---.........///~~~~~~~~~...,,,,,,...,,,...000555;;;:::555111+++

a score=56 EG=9e+05 E=0.37 fullScore=67.3
s Q2LCP8 409 17 + 492 ArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIle
s S1_68   38 51 - 460 AAAGTGCAATTAATCAGGCGCGCTTTTTTCCATGCCAGCGTAGTGGTGGTC
q S1_68               Xgqc~{KG[?~`~CNo~~C]~^tDKvP~cwR~~Hi~ZYvLZxbNbUfnU~~
p                     %%%***,,,111444666888~~~~~~~~~((($$$############"""

a score=57 EG=7.2e+05 E=0.33 fullScore=65.6
s Q2LCP8 126 11 + 492 AlaHisAsnLeuIleThrLeuPheLeuSerLeu
s S1_69    4 33 - 505 GTACACAGCGCGATTTCACCGTTCtcgtcgttg
q S1_69               >=<<^A_CkT~jN/WM5-7>^V<B2~}]xY5E_
p                     &&&...000111777999>>>FFFFFF~~~~~~

a score=61 EG=3e+05 E=0.17 fullScore=70.8
s Q2LCP8 229 13 + 492 LeuIleAspValTyrGluGlyAlaGlyMetLeuMetThr
s S1_81  367 39 + 615 CTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACC
q S1_81               ;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2>
p                     (((+++///000000222333~~~~~~~~~~~~)))'''

a score=57 EG=7.2e+05 E=0.31 fullScore=66.2
s Q2LCP8 249 11 + 492 Lysleuvalthrleumetvalleuileasnleu
s S1_84  311 33 + 484 AAAATGACTGCCCTGATGATCCTCATCACTCTG
q S1_84               5~~u~Z~pA<~tm~`Y\xA~hM~YnayNlWA[~
p                     '''((()))---~~~~~~:::555111(((&&&

a score=70 EG=4.3e+04 E=0.013 fullScore=81.1
s Q2LCP8 447 11 + 492 AlaGluLeuGluIleThrSerLysProThrLys
s S1_85  183 33 + 361 GCCAGGCTCGAAGTCATCAGCACGCCAACAAAG
q S1_85               SK;)+OKoHe/X0I9^.IPD^C1O*;HD><E6%
p                     +++...666===???@@@EEEDDD~~~~~~~~~

a score=57 EG=7.2e+05 E=0.43 fullScore=67.1
s Q2LCP8  44 12 + 492 LeuLysLeuthrleuilevalilemetilevalile
s S1_93  119 36 - 650 CTCAAAGCCATCCTGGTGATGATTATGGTGGTCATT
q S1_93               ?_sI~R_lA`PhDjXLL>'am3:HU<5[<JQ6aVXJ
p                     ~~~~~~666666777333333333222---,,,)))

a score=59 EG=4.7e+05 E=0.16 fullScore=63.4
s Q2LCP8 317 10 + 492 AlaGlySerMetSerGluGluLeuMetVal
s S1_98  195 30 + 401 GCGGGCGGTATGGGTGCGGCGCTGATGGCG
q S1_98               ^qSm~vj}J~i~~y~~BPs_M~;{~=~2G6
p                     ~~~~~~DDDGGG===;;;999888222'''

a score=58 EG=5.8e+05 E=0.2 fullScore=61.9
s Q2LCP8 130 13 + 492 IleThrLeuPheLeuSerLeuGluIleSerSerIleCys
s S1_98    4 39 + 401 ATTGCGTCATTCGCGTCGCTTGTGATGTCACCAATCCGC
q S1_98               yq{~I8V.~S~XFRM~Sp~~B~?a[bDI~~~aRo~JsTK
p                     '''))),,,222333~~~~~~===:::777111///(((

# Query sequences=100 normal letters=45801

TEST lastal -Q1 -pbadcodon.mat -a17 -b1 -F9,9,9,9 -X1 -D1e3 -j4 /tmp/last-test sd-ccs-100.fq
lastal: quality data not used for DNA-versus-protein alignment
#
# a=17 b=1 A=17 B=1 F=9,9,9,9 e=66.3236 d=45 x=66 y=43 z=66 D=1000 E=1.01626e+12
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.34294 j=4 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=492
# lambda=0.230259 K=4.35887
#
#   GCC GCG GCA GCT TGC TGT GAC GAT GAG GAA TTC TTT GGC GGT GGA GGG CAC CAT ATC ATT ATA AAG AAA TTG TTA CTT CTA CTC CTG ATG AAC AAT CCC CCG CCA CCT CAG CAA AGG AGA CGG CGC CGT CGA TCC AGC TCG TCA TCT AGT ACC ACT ACA ACG GTC GTG GTT GTA TGG TAC TAT TAG TGA TAA
# A   9   7   8   9  -9  -9  -1  -1  -5  -3  -4  -5  -1  -1  -2  -4  -9 -10   0   0  -1  -9  -7  -7  -5  -6  -6  -5  -9  -3  -5  -5  -1  -3  -2  -1 -14 -11  -8  -7 -13  -9  -9 -10   0  -5  -1   0   0  -5   5   4   4   3   5   1   5   4 -12  -8  -9 -11  -9  -9
# C -10 -17 -17 -10  12  12  -5  -5 -14 -13   1   1   0   1  -7  -8   1   1  -8  -8 -15 -13 -12  -7  -5  -4 -11  -4 -13 -16  -4  -4  -5 -12 -12  -5  -8  -6  -7  -6  -2   7   7   0   0   1  -6  -6   0   2  -9  -9 -16 -16  -9 -17  -9 -16   4   7   7  -1   6   0
# D   0  -7  -6   0  -3  -2   9   9   0   1  -8  -8   5   6  -2  -3   1   1  -3  -3 -10  -4  -3 -16 -14  -9 -16  -9 -18 -12   5   5 -10 -17 -16 -10  -9  -7  -7  -6 -12  -3  -3 -10  -9   1 -15 -15  -9   1  -4  -4 -11 -11   1  -7   2  -6 -10   2   2  -6  -9  -4
# E  -8   2   1  -7 -11 -10   1   2   9   9 -16 -15  -3  -2   5   5  -7  -6 -12 -11  -3   4   4  -7  -7 -16  -8 -17  -9  -3  -3  -2 -18  -8  -9 -17   0   0   1   1  -4 -12 -10  -3 -17  -8  -7  -8 -16  -6 -12 -11  -4  -3  -7   1  -6   2  -2  -6  -5   2  -1   3
# F  -5 -12 -12  -5   2   2 -10 -10 -19 -18  10  10 -10  -9 -17 -18  -3  -3   1   1  -6 -18 -16   2   4   5  -2   5  -4  -7  -8  -9   0  -7  -7   0 -13 -11 -17 -16 -12  -3  -3 -10   5  -9  -1  -1   5  -9  -4  -4 -11 -11   0  -8   0  -7  -6   2   2  -6  -4  -4
# G  -2  -1  -1  -3   1   0   3   2   2   2 -10 -11   9   8   8   8  -5  -6  -5  -6  -5  -2  -2 -10  -9 -11 -10 -11 -12  -6  -1  -2 -12 -11 -11 -12  -7  -6   4   4  -1   0   0   0 -11   4  -9 -10 -12   3  -6  -7  -6  -5  -1  -1  -1   0   1  -4  -5  -4   2  -3
# H -10 -17 -17 -10   2   2  -1  -1 -10  -9  -3  -3  -5  -5 -12 -13  11  11  -8  -8 -15  -9  -8 -11  -9   1  -5   2  -8 -16   1   0   1  -7  -6   0   1   3 -12 -11  -2   7   7   0  -4  -4 -10 -10  -4  -4  -9  -9 -16 -16  -9 -17  -9 -16  -6   7   6  -1  -4   0
# I  -1  -6  -4  -1  -8  -8  -6  -6 -13  -9   0   0  -6  -5  -9 -12  -9  -9   9   9   7  -7  -4  -5  -2   0  -3   0  -7   3   0   0  -6 -11  -8  -6 -16 -12  -7  -3 -15  -9  -8 -11  -5  -1  -9  -7  -5   0   4   4   2  -1   4  -2   4   2 -14  -8  -8 -14 -10 -10
# K -14  -4  -5 -12 -11 -10  -4  -3   3   3 -16 -15  -9  -7   0   0  -7  -6  -7  -6   1   9   9  -7  -7 -16  -8 -17  -9   1   1   2 -18  -8  -9 -17   0   0   5   5  -4 -12 -10  -3 -17  -3  -7  -8 -16  -2  -8  -7   0   2 -12  -4 -11  -4  -2  -6  -5   2  -1   3
# L  -9  -4  -7  -9  -6  -5 -13 -13 -11 -13   3   3 -13 -13 -12 -10  -2  -2  -3  -3  -1 -10 -12   8   7   7   7   7   8   0 -12 -12   2   5   2   1  -1  -2  -9 -11   0  -2  -1  -1  -2 -12   4   1  -2 -12  -8  -8  -6  -3  -3  -1  -3  -2  -1  -5  -5  -1  -2  -2
# M  -9   3  -2  -8 -16 -15 -13 -12  -4  -8  -7  -6 -13 -12  -8  -3 -16 -15   2   3   8   1  -3   3   0  -7  -2  -8   1  12  -8  -7 -13  -2  -7 -12  -8 -11   2  -2  -7 -16 -15 -10 -12  -8   0  -6 -11  -7  -4  -2   3   8  -3   6  -2   3  -5 -15 -14  -5  -9  -9
# N  -5 -12 -12  -5  -3  -2   4   4  -5  -4  -8  -8   0   0  -8  -9   1   1   1   1  -6   0   1 -16 -14  -9 -16  -9 -18  -7   9   9 -10 -17 -16 -10  -9  -7  -3  -2 -12  -3  -3 -10  -9   5 -15 -15  -9   5   0   0  -7  -7  -4 -13  -4 -11 -10   2   2  -6  -9  -4
# P  -2  -3  -1  -1  -4  -4 -11 -11 -15 -13   0   0 -12 -11 -12 -14   0   0  -5  -5  -5 -14 -11  -2   0   5   4   4   1  -8 -10 -10   9   7   9   9  -4   0 -13 -11  -3   0   1   0   4 -11   4   5   5 -10  -1   0   0  -2  -6  -9  -6  -6  -6  -4  -4  -6  -3  -3
# Q -18  -8 -10 -17  -6  -5  -9  -8  -1  -2 -11 -10 -13 -12  -6  -4   3   4 -16 -15  -8   1  -1  -2  -3  -6   1  -7   2  -7  -8  -7  -8   2   0  -7  11  10  -3  -5   7  -1   0   6 -12 -12  -1  -4 -11 -11 -17 -16  -9  -7 -17  -8 -16  -9   3  -2  -1   8   3   7
# R -13  -6  -7 -13   3   2  -8  -8  -4  -3  -8  -8  -2  -2   3   3   2   1  -9  -8  -1   1   2  -5  -5  -4  -2  -3  -3  -2  -4  -4  -4  -2  -3  -5   2   2   7   7   8   7   7   8  -9   1  -5  -6  -9   1 -10  -9  -2  -2 -12  -7 -12  -6   5  -2  -3   0   6   0
# S  -3  -5  -4  -2   1   1  -3  -4 -12 -10   2   2   1   1  -6  -7  -4  -4  -1  -2  -5  -7  -6  -1   2  -2  -3  -2  -7  -8   2   1   2  -1   1   2 -10  -7  -2  -1  -8   0  -1  -5   7   7   5   7   7   6   0   0  -2  -3  -5 -10  -5  -7  -3   0  -1  -4  -1  -1
# T   3   2   3   3  -9  -9  -7  -7 -10  -8  -5  -5  -7  -7  -7  -9 -10 -10   4   4   4  -5  -2  -7  -4  -6  -6  -6  -9   1  -1  -1  -1  -3  -1  -1 -14 -10  -4  -2 -13 -10 -10 -10   0  -2  -1   0   0  -2   8   8   9   7  -1  -4  -1  -1 -11  -9  -9 -11  -8  -8
# V   2   5   3   2 -10 -10  -2  -2  -1  -3  -2  -2  -2  -2  -3  -1 -11 -11   3   3   3  -6  -7   1  -1  -2  -2  -3  -1   5  -7  -7  -8  -5  -7  -8 -10 -11  -5  -7 -10 -11 -10 -11  -7  -7  -3  -6  -7  -7  -2  -2  -2   1   7   9   8   8  -8 -10 -10  -8  -9  -9
# W -18  -7 -12 -17   3   5 -13 -12  -4  -8  -7  -6  -8  -7  -2   2  -7  -6 -16 -15 -10  -3  -7   3   0 -11  -6 -12  -3  -6 -12 -11 -13  -2  -7 -12   2  -1   3  -1   8  -1   0   5  -8  -7   4  -1  -7  -6 -17 -16 -11  -6 -17  -7 -16 -11  14  -2  -1   9  11   5
# Y -10 -17 -17 -10   6   6  -1  -1 -10  -9   1   1  -5  -5 -12 -13   6   6  -8  -8 -15  -9  -8  -7  -5  -4 -11  -4 -13 -16   1   0  -5 -12 -12  -5  -4  -2 -12 -11  -7   2   2  -6   0  -4  -6  -6   0  -4  -9  -9 -16 -16  -9 -17  -9 -16  -2  11  11   3   0   5
# * -18 -10  -8 -17   2   3 -11 -10  -4  -2  -7  -6 -10  -8   0  -4  -4  -3 -16 -15  -6  -3  -1   0   3 -11  -2 -12  -6 -10  -9  -8 -13  -5  -3 -12   2   4  -3   1   2  -3  -2   7  -8  -9   0   2  -7  -8 -17 -16  -7  -9 -17 -11 -16  -7   8   1   2   9  13  11
# X   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=75.1 EG=1.3e+05 E=0.098
s Q2LCP8 237  43 + 492 GlyMetLeuMetThrPheTyrLeuThrIleThrGlnLysleuvalthrleumetvalleuileasnleutyrgln--asnleuileile-tyrthrasnalailemetphethrasnglyleuileIleLeu
s S1_1   437 132 - 743 GGAGTGCTTATTTTTGTATTTCTGGTGATATTCTATGGGATTATTATTTTAATGATATTCCCTACCTGATGCTAAAAAACGTAATCATCCCATGCCGACGCCATTCATGTTGCTGGTTGGGTGATCTTTTTA
q S1_1                 ~~9TPO^~SL.~~J~~AS~L[t~~PlqF~~Yt~>EaMN.m~~O~W~E~Fdcpa{bYy}~Uaf~YEIu~~J[~q~D_~~~o7~_Y0~j_jp~C\~~gxfl4~~sbFd~T~~M~~y3~e~~aQOaCJe~u~{d_
p                      $$$$$$$$$$$$$$$$$$%%%%%%%%%%%%%%%%%%&&&&&&'''***~~~~~~666222//////......***--"""#########-((()))))))))(((%%%%%%%%%%%%%%%%%%%%%$$$###

a score=69.2 EG=5.1e+05 E=0.29
s Q2LCP8 405 14 + 492 MetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePhe
s S1_5   472 42 + 558 GTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTC
q S1_5                =w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt
p                     #########%%%&&&,,,000666999@@@~~~~~~///+++

a score=85.7 EG=1.2e+04 E=0.0051
s Q2LCP8 426 15 + 492 TyrTyrMetAsnLeuValLysIleIleIleIleAspLysValGln
s S1_8    93 45 + 438 CGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAG
q S1_8                U;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E3<L4H?
p                     $$$%%%''')))///333666~~~~~~EEEEEE???666222---

a score=69.1 EG=5.3e+05 E=0.3
s Q2LCP8 383 12 + 492 MetTyrLeuAlaGlyLeuProProMetThrAsnPhe
s S1_9   210 36 + 563 ACATACCTGGCTGCACTTCCGCCAGAGGCACGCTTT
q S1_9                <~M~P~Wp{cI~r~~B6~~~Ski~~;mzH`~~H~~\
p                     '''~~~~~~~~~???>>>999444+++***((('''

a score=71.8 EG=2.9e+05 E=0.085
s Q2LCP8 21 13 + 492 IleIleLeuIleValLeuSerIleSerIleLysLysAsp
s S1_15  99 39 + 296 actgcttttattgTGTTGTTTATGTCAACTATAACAAAT
q S1_15              ~H~~d~xl~Nw5~~LhE~~~~Q~~M]wXNQI~HA~q~[~
p                    ###%%%,,,~~~~~~~~~:::666222,,,(((&&&%%%

a score=70.9 EG=3.5e+05 E=0.1
s Q2LCP8  89 29 + 492 IleIleLysMetPheGluGluGlyValThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIle---LeuIleTyrSerSerIle
s S1_15  174 90 - 296 ATAAACAACACAATAAAAGCAGTTGcaataaaaaatgtgttaataaaaaTAAAAGACGAACAAATGATATTTTTGATTTTCTTATTGATT
q S1_15               ~Q~~~~EhL~~5wN~lx~d~~H~=~~F~~M>5lJ~d~R~ITp\E~'Y~NkNDnK~C~J~~~HcBbs~~~I~I1p3B~~~A~3_{L-RbV~
p                     """"""#########&&&'''(((((()))************111~~~~~~<<<999222***(((&&&---&&&(((((('''&&&&&&

a score=75.0 EG=1.4e+05 E=0.087
s Q2LCP8 204 25 + 492 ArgIleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaProPheHisGlyTrp
s S1_17  388 72 - 643 CGCGGTGAGACGGAAATAGCATCGACCGATCCGGGACCA---TTGAGGCCGAGGATCTGTTTATCACGTCGCCGG
q S1_17               =7ACG23;8K*[O82;T89K==8,>9>=O&?6':;88NK---MWF4<PN?-7O\:;[)?=>U*=B9E??a^T,A_
p                     $$$$$$&&&...111~~~~~~EEEAAA<<<;;;888***---,,,000000///---''''''&&&&&&%%%$$$

a score=69.7 EG=4.6e+05 E=0.23
s Q2LCP8 287 11 + 492 GlyThrIleGlySerLeuArgGlnGlnLysLeu
s S1_21  101 33 + 510 GGCACCATCAGCTCTTAGCAACGATAACAATCA
q S1_21               1\:~LMgWKJGLNb4~'[M~T7O;+K6CJI0<e
p                     ~~~~~~~~~777333+++(((((('''$$$"""

a score=72.1 EG=2.6e+05 E=0.13
s Q2LCP8 276 16 + 492 leuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySer
s S1_21  109 48 - 510 CTGGTATTGGTGATTCTGACCATGCTGGCGGCAGTCACGACCGGTTCA
q S1_21               8~d)A5S']cqHE\N[;@+Sc~<U~9FsHJX6'~_@Y29FLM<WhAYp
p                     %%%&&&&&&(((~~~~~~;;;;;;@@@<<<999777666333...'''

a score=71.5 EG=3.1e+05 E=0.16
s Q2LCP8 404 13 + 492 TyrMetValLeuGlyArgValTyrLeuThrMetLeuAla
s S1_21  100 39 - 510 CACCTGATGCTGGTATTGGTGATTCTGACCATGCTGGCG
q S1_21               Ab~2M/?7;8~d)A5S']cqHE\N[;@+Sc~<U~9FsHJ
p                     &&&(((***,,,,,,---000111~~~~~~~~~~~~~~~

a score=77.7 EG=7.3e+04 E=0.057
s Q2LCP8  98 21 + 492 ThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIle
s S1_26  483 63 + 786 ACTCAGGGAAAAAAAGTATAAATCATCGAGGCTTGGTTTCTATTTATTACTTGTGGTATTGTT
q S1_26               u}`X~M`SDC~~:~|u`{~~P~v~c~~gb~~3X~C~BUQ~]IwN~X~~~~~~RYwc9L~f~bU
p                     +++...~~~~~~~~~222111000+++%%%%%%%%%%%%$$$$$$$$$$$$$$$$$$$$$###

a score=66.8 EG=8.9e+05 E=0.7
s Q2LCP8 174  7 + 492 LeuLeuGlyIleValSerIle
s S1_26  745 21 + 786 TTATTATGGATTGTATCCATA
q S1_26               d`~~q[d~fRP~DZFTf2~Dy
p                     (((...333~~~~~~~~~~~~

a score=66.6 EG=9.3e+05 E=0.73
s Q2LCP8 38 25 + 492 HisIleIleIleGlnSerLeuLys-LeuthrleuilevalilemetilevalileGlyIleGluGluSerIleTyr
s S1_26  44 73 + 786 CATATCATCTGTCAGAGTTTT---CCCGAAGAATATAGTGATTACGACAGTACTAGAAAGAATATAATTAACCTGT
q S1_26              ~r~N@~}qnh~rO[|~~gib~---I~xD~y~[L~R~~Otd~M~Gy[Z~~Ph7h~~vzP~[~b{~M|o~~Kc~FMy~
p                    ((((((((((((((('''%%%----$$$$$$%%%~~~~~~~~~<<<444111***(((&&&&&&&&&%%%%%%$$$

a score=79.1 EG=5.2e+04 E=0.041
s Q2LCP8 266 17 + 492 tyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuVal
s S1_26  644 51 - 786 TTCACTATTGCGAACAGCCTCCTCAACAGGTTAATTATATTCTTTCTAGTA
q S1_26               wd~~~~]F~nep~\=~}d~.~@m~X~yMF~cK~~o|M~{b~[~Pzv~~h7h
p                     $$$'''((()))******,,,---555:::~~~~~~~~~555222000***

a score=67.9 EG=7e+05 E=0.45
s Q2LCP8 398  9 + 492 IleLeuIleLeuLeuProTyrMetVal
s S1_27  164 27 - 647 ACACCAGTACGGCTCCCGTACATGGTG
q S1_27               P;XhB~}krY~f~~UAjhqK-Z;s>~h
p                     ###&&&))),,,~~~~~~~~~~~~~~~

a score=84.7 EG=1.5e+04 E=0.0085
s Q2LCP8 250  35 + 492 leuvalthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuValThrLeu
s S1_40   51 105 - 579 CCGACAACGCTTGCTGGTCGCATTTATTCCTACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACTTTA
q S1_40                MkG\Hp<CGror?v4]3bdI\OB\4:UAI?@`MNQHdSKNZAeO6U>~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D?
p                      %%%(((~~~~~~888888;;;BBB@@@>>>@@@999;;;555555444;;;:::;;;777777===CCC888777666666111222222111000...---(((

a score=74.4 EG=1.6e+05 E=0.09
s Q2LCP8 271 27 + 492 metphethrasnglyleuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGlnLysLeu
s S1_40  327 69 - 579 ATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAA---CTGGTGTTTGCGACG---------TGGAGCTGGCAAAAGCTG
q S1_40               ^RJrHiP~l5eVT:Q\OQjqNK?M&JG8P_~k=mG[---B\L?OY4tXC:u.\Y---------DJ5H;rW=[RGacq~@,>
p                     ~~~~~~EEEBBB>>>===777444---%%%$$$###---''''''&&&%%%$$$---------###$$$%%%&&&&&&%%%

a score=71.7 EG=2.9e+05 E=0.17
s Q2LCP8 280 16 + 492 IleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGln
s S1_40    3 48 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTG
q S1_40               P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScD
p                     ~~~~~~@@@???CCCCCC???===444///,,,++++++)))'''%%%

a score=79.3 EG=5e+04 E=0.029
s Q2LCP8 384 31 + 492 TyrLeuAlaGlyLeuProProMetThrAsnPheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMet
s S1_55  247 93 - 578 TGCTTTTTCTGCGTTCATTCAATGTCGAATGCGATGTTGACACGTCTTAtccttcaatgtcggatgcgacgctgccgcgtctATCCGACCACG
q S1_55               325GA,4&47/FN+J9.6?*1S0L-?2<80+>@7>@AJX??)L5*>&)+ME:A9;:.&>&?=-%HAR'5)Z1-7;&8(6B,1M59B(,8%'LW
p                     $$$$$$$$$%%%&&&(((,,,/////////.../////////000~~~~~~~~~000......///...000222777>>>===888333+++

a score=66.4 EG=9.8e+05 E=0.45
s Q2LCP8 409 17 + 492 ArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIle
s S1_68   38 51 - 460 AAAGTGCAATTAATCAGGCGCGCTTTTTTCCATGCCAGCGTAGTGGTGGTC
q S1_68               Xgqc~{KG[?~`~CNo~~C]~^tDKvP~cwR~~Hi~ZYvLZxbNbUfnU~~
p                     %%%***,,,111444666888~~~~~~~~~)))$$$######$$$###"""

a score=70.3 EG=4e+05 E=0.24
s Q2LCP8 229 13 + 492 LeuIleAspValTyrGluGlyAlaGlyMetLeuMetThr
s S1_81  367 39 + 615 CTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACC
q S1_81               ;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2>
p                     (((+++...111111333555~~~~~~~~~~~~***(((

a score=78.7 EG=5.8e+04 E=0.021
s Q2LCP8 447 11 + 492 AlaGluLeuGluIleThrSerLysProThrLys
s S1_85  183 33 + 361 GCCAGGCTCGAAGTCATCAGCACGCCAACAAAG
q S1_85               SK;)+OKoHe/X0I9^.IPD^C1O*;HD><E6%
p                     ***---444;;;>>>AAAFFFFFF~~~~~~~~~

a score=67.0 EG=8.6e+05 E=0.31
s Q2LCP8 236 10 + 492 AlaGlyMetLeuMetThrPheTyrLeuThr
s S1_85  149 30 - 361 GTTGGCGTGCTGATGACTTCGAGCCTGGCG
q S1_85               >DH;*O1C^DPI.^9I0X/eHoKO+);KS'
p                     ###(((---~~~~~~~~~+++)))((($$$

a score=67.7 EG=7.3e+05 E=0.21
s Q2LCP8 183 10 + 492 SerThrGlySerLeuMetTyrThrAspLeu
s S1_92  157 30 + 283 CCCATTGGCCTGTTGATGTATGCCAATCTG
q S1_92               8AFN8I??GG](>Q=CNG/G>@(;^X49RH
p                     $$$(((,,,,,,~~~~~~~~~777222***

a score=66.7 EG=9.3e+05 E=0.6
s Q2LCP8  44 12 + 492 LeuLysLeuthrleuilevalilemetilevalile
s S1_93  119 36 - 650 CTCAAAGCCATCCTGGTGATGATTATGGTGGTCATT
q S1_93               ?_sI~R_lA`PhDjXLL>'am3:HU<5[<JQ6aVXJ
p                     ~~~~~~888999:::555555555333...---***

# Query sequences=100 normal letters=45801

TEST lastal -Q1 -pBL62 -b1 -F3,3,3,3 -X1 -j4 -e56 /tmp/last-test sd-ccs-100.fq
lastal: quality data not used for DNA-versus-protein alignment
#
# a=11 b=1 A=11 B=1 F=3,3,3,3 e=56 d=29 x=55 y=31 z=55 D=1e+06
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=4 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=492
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=72.7
s Q2LCP8 124 23 + 492 MEAHNLITLFLSLEISSICFYIL
s S1_1   360 69 - 743 MGFHNMr*lfffislreicfwii
p                     %&(020//110012348~~~0*&

a score=62.4
s Q2LCP8 394  34 + 492 FISKILILLPYMVLGRVYLTMLAFFLSVGVMIYY
s S1_1   395 102 - 743 YISEGNMFLDYFALGVLIFVFLVIFYGIIILMIF
p                      (~~6223479<8652*(''''''&&&%%$$#""!

a score=58.3
s Q2LCP8 233 23 + 492 YEGAGMLMTFYLTITQKlvtlmv
s S1_1   425 69 - 743 YFALGVLIFVFLVIFYGIIILMI
p                     $%'),-.--./234334789~~*

a score=56.2
s Q2LCP8 14 28 + 492 SIYILPLIILIVLSISIKKDVQRVHIII
s S1_5   78 84 - 558 TITLLNLILRILLSYLIREVIMVQRITI
p                    %()+/1~~:77640,++)&$""!!!!!!

a score=61.5
s Q2LCP8 136 23 + 492 LEISSICFYILALNKNSRKGIEG
s S1_13  414 69 + 824 ITISTVMFHMCRLNHDSVPVLQG
p                     $&~~?=66654453.,*('&&&%

a score=57.7
s Q2LCP8 105 28 + 492 ITDEGLILIYSSIIGMLISMEAHNLITL
s S1_13   61 84 - 824 IKEEGAVAVATAIEAVMNVAPAQNLLAI
p                     )+1~~:8652110..--++,-0120,(&

a score=59.7
s Q2LCP8 288 20 + 492 TIGSLRQQKLIRFIAYSAIV
s S1_19  408 60 + 552 TGGKRSVQKVYRFLSYCLIV
p                     $$&&&'(~~><BC<97.,+)

a score=59.9
s Q2LCP8 293  50 + 492 RQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVL
s S1_20   20 150 + 484 RRERKYRCQACSATTNYAIALLQSVSPDNRSSLRQAAFFLPGHCMRLTAI
p                      %%&&&(,,-13~~<;;652/..,+***)****++,-.001000//..-*(

a score=56.8
s Q2LCP8 276 16 + 492 liILILVTLVVGTIGS
s S1_21  109 48 - 510 LVLVILTMLAAVTTGS
p                     (+,.~~310.,,,**&

a score=68.8
s Q2LCP8  94 28 + 492 EEGVTEGKKTKITDEGLILIYSSIIGML
s S1_26  118 84 + 786 EEAVRNSEKMSLSDSELDAAFYAVIVML
p                     ~~>=8776655654/-,))((''''&&%

a score=67.4
s Q2LCP8 176 14 + 492 GIVSIYKSTGSLMY
s S1_26  537 42 + 786 GIVAVYFVVLSMIY
p                     ~~~?<90/...-,*

a score=65.2
s Q2LCP8 394 14 + 492 FISKILILLPYMVL
s S1_26  709 42 + 786 WISVILVTLPLNLL
p                     (~~::97442)('&

a score=63.1
s Q2LCP8  98  39 + 492 TEGKKTKITDEGLILIYSSIIGMLISME--AHNLITLFLSL
s S1_26  483 116 + 786 TQGKKV*IIEAWFLFITCGIVAVYFVV-/FIHDLYEMILCL
p                      /4~~~*''&%$##########"""!!!---"""""""""""

a score=62.0
s Q2LCP8 133 13 + 492 FLSLEISSICFYI
s S1_26  628 39 + 786 FVSVFVLSVCYVI
p                     ~<8321111/$##

a score=61.6
s Q2LCP8 323  39 + 492 ELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDI
s S1_26  297 117 + 786 EFFLNLINHRIGKSAGWVFLLCLLLGFRGKYSVGSNDEI
p                      &&'())********+,,-.2458:=~~'%$$$$$#""""

a score=60.7
s Q2LCP8  90 25 + 492 IKMFEEGVTEGKKTKITDEGLILIY
s S1_26  455 75 + 786 VAIAKETIFHSGKKSINHRGLVSIY
p                     """""""""""""##&((,~~/*)(

a score=59.6
s Q2LCP8 359 30 + 492 EDIYQLKNMWVINMFGAIVYILVLMYLAGL
s S1_26  583 90 + 786 DDFMLKKTFSLFLWFFVSVFVLSVCYVIGV
p                     )~'&%%%$$$$$$%(()*-./.----+*)%

a score=58.6
s Q2LCP8 394 19 + 492 FISKILILLPYMVLGRVYL
s S1_26  525 57 + 786 FITCGIVAVYFVVLSMIYM
p                     ~~/******+-/011/.-'

a score=57.8
s Q2LCP8 333 16 + 492 INYIIGLTVLMSLIMG
s S1_26  673 48 - 786 VNYILSSTVVITIFFG
p                     )~~~>989741/.,+*

a score=58.7
s Q2LCP8 246 33 + 492 ITQKlvtlmvlinlyqnliiytnaimftngliI
s S1_36  117 99 - 604 LTASALNL*SNVGFFCSLLAPSDAILFQEGVSV
p                     "####$$$$$$%&'()+,--.04~~?;432+('

a score=56.4
s Q2LCP8 135 21 + 492 SLEISSICFYILALNKNSRKG
s S1_40   89 63 + 579 SAQIYTTCEAIKAINKNAASG
p                     &')**,.22367<?~~~-*('

a score=63.2
s Q2LCP8 252  51 + 492 tlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSL-RQQKLIRFIA
s S1_40   57 133 - 579 TLAGRIYSYVSIIGHFSFLVFATYLLILFPLTLS-------\RLQRLMRFLS
p                      ###$$&&'()))))))******)(((''&&&%$"--------$$(,15~~($

a score=56.8
s Q2LCP8 88  53 + 492 MIIKMFEEGVTEGKKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISS
s S1_40   3 159 - 579 ILLSLVIGAVTCFRRLPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTLSS
p                     !"""""##$%%%&'''(()*+./00156~~~~)'%%$$#######$$%&&&&%

a score=56.7
s Q2LCP8 280 15 + 492 ILVTLVVGTIGSLRQ
s S1_40    3 45 - 579 ILLSLVIGAVTCFRR
p                     ~~@>>;62*'$##"!

a score=56.5
s Q2LCP8  59 31 + 492 ESIYVKLNGHLIKTELIKLFEYLLLGVSYMI
s S1_40  174 93 - 579 DEVFVRHSGTAGMTLLLIDSEVLLVSISILI
p                     %',/00001/.-./---,,.47~~8541+*(

a score=62.6
s Q2LCP8 211 31 + 492 LIVLGLILKLGIAPFHGW---LIDVYEGAGMLMT
s S1_61  233 98 + 442 LLAFPLVLVMGCAFAHLW/GLLIDALKIPAFIIT
p                     ###$$$%%%$$##""""!---~~~+'&%$$$$$$

a score=57.0
s Q2LCP8 251  50 + 492 vtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRF
s S1_61   95 150 + 442 ITLSGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAF
p                      (~~533310002367665452221310/,+*)*****+++(&&%%%%$##

a score=73.1
s Q2LCP8 205  72 + 492 IQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngl
s S1_67  215 207 - 496 LELAISSVVLAVIIGLIGA---GGKLSQNRLSGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNTVTEAMGV
p                      &)+-0016~~1-+&$#"!!---###$$%&'(*/12233867521//...----,---..--,++*(%####"

a score=56.2
s Q2LCP8 299 15 + 492 RFIAYSAIVNSALLI
s S1_67  446 45 - 496 RWYYYSSVLSTVLIL
p                     %&&(~~3.,)(&%$#

a score=61.7
s Q2LCP8 197 24 + 492 MENTDDYRIQMGIALIVLGLILKL
s S1_68  178 72 + 460 LDSTADYPQQPGVVLIKVPKTLAL
p                     *.157~~6576730.+'&$$###"

a score=56.5
s Q2LCP8 389 22 + 492 PPMTNFISKILILLPYMVLGRV
s S1_80  199 66 - 550 PPTARFVAEYSIQLSYGCIGKI
p                     ~~:9:=74322556660/.-)$

a score=58.6
s Q2LCP8  40 26 + 492 IIQSLKLtlivimiviGIEESIYVKL
s S1_82  384 78 - 636 LVAQFHLLKVVMLLVSGILDVVHAGL
p                     $%%%&'(()+,-./12~~20-+(%$#

a score=63.4
s Q2LCP8 204  47 + 492 RIQMGIALIVLGLILKLGI-APFHGWLIDVYEGAGMLMTFYLTITQKl
s S1_85   34 142 - 361 RCRTGLTAVVVGVMFLLVM\SSHRGGMVPPYATAGALIFVGVLMTSSL
p                      ~<;;=9545532*('&%#"-"###%%'())...//-,*(('('((&%%

a score=78.1
s Q2LCP8 395 30 + 492 ISKILILLPYMVLGRVYLTMLAFFLSVGVM
s S1_91   49 90 - 418 ISRFRIVTPGLIYAREYLLLSFWYVSVGII
p                     '()*+/13658989;9;4.-,,-05~~~+%

a score=65.4
s Q2LCP8 344 15 + 492 SLIMGFLRLNDRGTI
s S1_99  437 45 + 621 TLTMGFMPVNPRATI
p                     &+/~~~?:<=8731,

# Query sequences=100 normal letters=45801

>Q2LCP8
MVCLFENLMNMIKYSIYILPLIILIVLSISIKKDVQRVHIIIQSLKLtlivimiviGIEESIYVKLNGHLIKTELIKLFEYLLLGVSYMIIKMFEEGVTEGKKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNLVKIIIIDKVQTHEQGVAELEITSKPTKGGRRIVLGVMWLIFSQLYLDEILNVIKVIVALI*
TEST lastal -Q1 -pbadcodon.mat -a17 -b1 -F9,9,9,9 -X1 -D1e3 /tmp/last-test sd-ccs-100.fq
lastal: quality data not used for DNA-versus-protein alignment
#
# a=17 b=1 A=17 B=1 F=9,9,9,9 e=66.3236 d=45 x=66 y=43 z=66 D=1000 E=1.01626e+12
# R=01 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.34294 j=3 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=492
# lambda=0.230259 K=4.35887
#
#   GCC GCG GCA GCT TGC TGT GAC GAT GAG GAA TTC TTT GGC GGT GGA GGG CAC CAT ATC ATT ATA AAG AAA TTG TTA CTT CTA CTC CTG ATG AAC AAT CCC CCG CCA CCT CAG CAA AGG AGA CGG CGC CGT CGA TCC AGC TCG TCA TCT AGT ACC ACT ACA ACG GTC GTG GTT GTA TGG TAC TAT TAG TGA TAA
# A   9   7   8   9  -9  -9  -1  -1  -5  -3  -4  -5  -1  -1  -2  -4  -9 -10   0   0  -1  -9  -7  -7  -5  -6  -6  -5  -9  -3  -5  -5  -1  -3  -2  -1 -14 -11  -8  -7 -13  -9  -9 -10   0  -5  -1   0   0  -5   5   4   4   3   5   1   5   4 -12  -8  -9 -11  -9  -9
# C -10 -17 -17 -10  12  12  -5  -5 -14 -13   1   1   0   1  -7  -8   1   1  -8  -8 -15 -13 -12  -7  -5  -4 -11  -4 -13 -16  -4  -4  -5 -12 -12  -5  -8  -6  -7  -6  -2   7   7   0   0   1  -6  -6   0   2  -9  -9 -16 -16  -9 -17  -9 -16   4   7   7  -1   6   0
# D   0  -7  -6   0  -3  -2   9   9   0   1  -8  -8   5   6  -2  -3   1   1  -3  -3 -10  -4  -3 -16 -14  -9 -16  -9 -18 -12   5   5 -10 -17 -16 -10  -9  -7  -7  -6 -12  -3  -3 -10  -9   1 -15 -15  -9   1  -4  -4 -11 -11   1  -7   2  -6 -10   2   2  -6  -9  -4
# E  -8   2   1  -7 -11 -10   1   2   9   9 -16 -15  -3  -2   5   5  -7  -6 -12 -11  -3   4   4  -7  -7 -16  -8 -17  -9  -3  -3  -2 -18  -8  -9 -17   0   0   1   1  -4 -12 -10  -3 -17  -8  -7  -8 -16  -6 -12 -11  -4  -3  -7   1  -6   2  -2  -6  -5   2  -1   3
# F  -5 -12 -12  -5   2   2 -10 -10 -19 -18  10  10 -10  -9 -17 -18  -3  -3   1   1  -6 -18 -16   2   4   5  -2   5  -4  -7  -8  -9   0  -7  -7   0 -13 -11 -17 -16 -12  -3  -3 -10   5  -9  -1  -1   5  -9  -4  -4 -11 -11   0  -8   0  -7  -6   2   2  -6  -4  -4
# G  -2  -1  -1  -3   1   0   3   2   2   2 -10 -11   9   8   8   8  -5  -6  -5  -6  -5  -2  -2 -10  -9 -11 -10 -11 -12  -6  -1  -2 -12 -11 -11 -12  -7  -6   4   4  -1   0   0   0 -11   4  -9 -10 -12   3  -6  -7  -6  -5  -1  -1  -1   0   1  -4  -5  -4   2  -3
# H -10 -17 -17 -10   2   2  -1  -1 -10  -9  -3  -3  -5  -5 -12 -13  11  11  -8  -8 -15  -9  -8 -11  -9   1  -5   2  -8 -16   1   0   1  -7  -6   0   1   3 -12 -11  -2   7   7   0  -4  -4 -10 -10  -4  -4  -9  -9 -16 -16  -9 -17  -9 -16  -6   7   6  -1  -4   0
# I  -1  -6  -4  -1  -8  -8  -6  -6 -13  -9   0   0  -6  -5  -9 -12  -9  -9   9   9   7  -7  -4  -5  -2   0  -3   0  -7   3   0   0  -6 -11  -8  -6 -16 -12  -7  -3 -15  -9  -8 -11  -5  -1  -9  -7  -5   0   4   4   2  -1   4  -2   4   2 -14  -8  -8 -14 -10 -10
# K -14  -4  -5 -12 -11 -10  -4  -3   3   3 -16 -15  -9  -7   0   0  -7  -6  -7  -6   1   9   9  -7  -7 -16  -8 -17  -9   1   1   2 -18  -8  -9 -17   0   0   5   5  -4 -12 -10  -3 -17  -3  -7  -8 -16  -2  -8  -7   0   2 -12  -4 -11  -4  -2  -6  -5   2  -1   3
# L  -9  -4  -7  -9  -6  -5 -13 -13 -11 -13   3   3 -13 -13 -12 -10  -2  -2  -3  -3  -1 -10 -12   8   7   7   7   7   8   0 -12 -12   2   5   2   1  -1  -2  -9 -11   0  -2  -1  -1  -2 -12   4   1  -2 -12  -8  -8  -6  -3  -3  -1  -3  -2  -1  -5  -5  -1  -2  -2
# M  -9   3  -2  -8 -16 -15 -13 -12  -4  -8  -7  -6 -13 -12  -8  -3 -16 -15   2   3   8   1  -3   3   0  -7  -2  -8   1  12  -8  -7 -13  -2  -7 -12  -8 -11   2  -2  -7 -16 -15 -10 -12  -8   0  -6 -11  -7  -4  -2   3   8  -3   6  -2   3  -5 -15 -14  -5  -9  -9
# N  -5 -12 -12  -5  -3  -2   4   4  -5  -4  -8  -8   0   0  -8  -9   1   1   1   1  -6   0   1 -16 -14  -9 -16  -9 -18  -7   9   9 -10 -17 -16 -10  -9  -7  -3  -2 -12  -3  -3 -10  -9   5 -15 -15  -9   5   0   0  -7  -7  -4 -13  -4 -11 -10   2   2  -6  -9  -4
# P  -2  -3  -1  -1  -4  -4 -11 -11 -15 -13   0   0 -12 -11 -12 -14   0   0  -5  -5  -5 -14 -11  -2   0   5   4   4   1  -8 -10 -10   9   7   9   9  -4   0 -13 -11  -3   0   1   0   4 -11   4   5   5 -10  -1   0   0  -2  -6  -9  -6  -6  -6  -4  -4  -6  -3  -3
# Q -18  -8 -10 -17  -6  -5  -9  -8  -1  -2 -11 -10 -13 -12  -6  -4   3   4 -16 -15  -8   1  -1  -2  -3  -6   1  -7   2  -7  -8  -7  -8   2   0  -7  11  10  -3  -5   7  -1   0   6 -12 -12  -1  -4 -11 -11 -17 -16  -9  -7 -17  -8 -16  -9   3  -2  -1   8   3   7
# R -13  -6  -7 -13   3   2  -8  -8  -4  -3  -8  -8  -2  -2   3   3   2   1  -9  -8  -1   1   2  -5  -5  -4  -2  -3  -3  -2  -4  -4  -4  -2  -3  -5   2   2   7   7   8   7   7   8  -9   1  -5  -6  -9   1 -10  -9  -2  -2 -12  -7 -12  -6   5  -2  -3   0   6   0
# S  -3  -5  -4  -2   1   1  -3  -4 -12 -10   2   2   1   1  -6  -7  -4  -4  -1  -2  -5  -7  -6  -1   2  -2  -3  -2  -7  -8   2   1   2  -1   1   2 -10  -7  -2  -1  -8   0  -1  -5   7   7   5   7   7   6   0   0  -2  -3  -5 -10  -5  -7  -3   0  -1  -4  -1  -1
# T   3   2   3   3  -9  -9  -7  -7 -10  -8  -5  -5  -7  -7  -7  -9 -10 -10   4   4   4  -5  -2  -7  -4  -6  -6  -6  -9   1  -1  -1  -1  -3  -1  -1 -14 -10  -4  -2 -13 -10 -10 -10   0  -2  -1   0   0  -2   8   8   9   7  -1  -4  -1  -1 -11  -9  -9 -11  -8  -8
# V   2   5   3   2 -10 -10  -2  -2  -1  -3  -2  -2  -2  -2  -3  -1 -11 -11   3   3   3  -6  -7   1  -1  -2  -2  -3  -1   5  -7  -7  -8  -5  -7  -8 -10 -11  -5  -7 -10 -11 -10 -11  -7  -7  -3  -6  -7  -7  -2  -2  -2   1   7   9   8   8  -8 -10 -10  -8  -9  -9
# W -18  -7 -12 -17   3   5 -13 -12  -4  -8  -7  -6  -8  -7  -2   2  -7  -6 -16 -15 -10  -3  -7   3   0 -11  -6 -12  -3  -6 -12 -11 -13  -2  -7 -12   2  -1   3  -1   8  -1   0   5  -8  -7   4  -1  -7  -6 -17 -16 -11  -6 -17  -7 -16 -11  14  -2  -1   9  11   5
# Y -10 -17 -17 -10   6   6  -1  -1 -10  -9   1   1  -5  -5 -12 -13   6   6  -8  -8 -15  -9  -8  -7  -5  -4 -11  -4 -13 -16   1   0  -5 -12 -12  -5  -4  -2 -12 -11  -7   2   2  -6   0  -4  -6  -6   0  -4  -9  -9 -16 -16  -9 -17  -9 -16  -2  11  11   3   0   5
# * -18 -10  -8 -17   2   3 -11 -10  -4  -2  -7  -6 -10  -8   0  -4  -4  -3 -16 -15  -6  -3  -1   0   3 -11  -2 -12  -6 -10  -9  -8 -13  -5  -3 -12   2   4  -3   1   2  -3  -2   7  -8  -9   0   2  -7  -8 -17 -16  -7  -9 -17 -11 -16  -7   8   1   2   9  13  11
# X   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=69.2 EG=5.1e+05 E=0.29
s Q2LCP8 405 14 + 492 MetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePhe
s S1_5   472 42 + 558 GTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTC
q S1_5                =w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt

a score=85.7 EG=1.2e+04 E=0.0051
s Q2LCP8 426 15 + 492 TyrTyrMetAsnLeuValLysIleIleIleIleAspLysValGln
s S1_8    93 45 + 438 CGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAG
q S1_8                U;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E3<L4H?

a score=69.1 EG=5.3e+05 E=0.3
s Q2LCP8 383 12 + 492 MetTyrLeuAlaGlyLeuProProMetThrAsnPhe
s S1_9   210 36 + 563 ACATACCTGGCTGCACTTCCGCCAGAGGCACGCTTT
q S1_9                <~M~P~Wp{cI~r~~B6~~~Ski~~;mzH`~~H~~\

a score=75.0 EG=1.4e+05 E=0.088
s Q2LCP8 204 25 + 492 ArgIleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaProPheHisGlyTrp
s S1_17  388 72 - 643 CGCGGTGAGACGGAAATAGCATCGACCGATCCGGGACCA---TTGAGGCCGAGGATCTGTTTATCACGTCGCCGG
q S1_17               =7ACG23;8K*[O82;T89K==8,>9>=O&?6':;88NK---MWF4<PN?-7O\:;[)?=>U*=B9E??a^T,A_

a score=71.5 EG=3.1e+05 E=0.16
s Q2LCP8 404 13 + 492 TyrMetValLeuGlyArgValTyrLeuThrMetLeuAla
s S1_21  100 39 - 510 CACCTGATGCTGGTATTGGTGATTCTGACCATGCTGGCG
q S1_21               Ab~2M/?7;8~d)A5S']cqHE\N[;@+Sc~<U~9FsHJ

a score=76.4 EG=9.7e+04 E=0.076
s Q2LCP8  98 21 + 492 ThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIle
s S1_26  483 63 + 786 ACTCAGGGAAAAAAAGTATAAATCATCGAGGCTTGGTTTCTATTTATTACTTGTGGTATTGTT
q S1_26               u}`X~M`SDC~~:~|u`{~~P~v~c~~gb~~3X~C~BUQ~]IwN~X~~~~~~RYwc9L~f~bU

a score=67.9 EG=7e+05 E=0.45
s Q2LCP8 398  9 + 492 IleLeuIleLeuLeuProTyrMetVal
s S1_27  164 27 - 647 ACACCAGTACGGCTCCCGTACATGGTG
q S1_27               P;XhB~}krY~f~~UAjhqK-Z;s>~h

a score=71.6 EG=2.9e+05 E=0.17
s Q2LCP8 280 16 + 492 IleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGln
s S1_40    3 48 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTG
q S1_40               P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScD

a score=66.4 EG=9.8e+05 E=0.45
s Q2LCP8 409 17 + 492 ArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIle
s S1_68   38 51 - 460 AAAGTGCAATTAATCAGGCGCGCTTTTTTCCATGCCAGCGTAGTGGTGGTC
q S1_68               Xgqc~{KG[?~`~CNo~~C]~^tDKvP~cwR~~Hi~ZYvLZxbNbUfnU~~

a score=69.1 EG=5.3e+05 E=0.32
s Q2LCP8 229 13 + 492 LeuIleAspValTyrGluGlyAlaGlyMetLeuMetThr
s S1_81  367 39 + 615 CTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACC
q S1_81               ;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2>

a score=78.7 EG=5.8e+04 E=0.021
s Q2LCP8 447 11 + 492 AlaGluLeuGluIleThrSerLysProThrLys
s S1_85  183 33 + 361 GCCAGGCTCGAAGTCATCAGCACGCCAACAAAG
q S1_85               SK;)+OKoHe/X0I9^.IPD^C1O*;HD><E6%

a score=66.8 EG=8.9e+05 E=0.34
s Q2LCP8 287 20 + 492 GlyThrIleGlySerLeuArgGlnGlnLysLeuIleArgPheIleAlaTyrSerAlaIle
s S1_87   70 60 - 379 GGTAGACTTGGCTTTCTCTTCCAGTAGCGGCAGATCAAATTCAATGACAGTATCGCCACT
q S1_87               0|<G7yN1~-sXOIPNC:Gc1R~^A:O]_O3\4B:/AL<Thd8*IHIOGf8VT2@hJ%y-

a score=67.7 EG=7.3e+05 E=0.21
s Q2LCP8 183 10 + 492 SerThrGlySerLeuMetTyrThrAspLeu
s S1_92  157 30 + 283 CCCATTGGCCTGTTGATGTATGCCAATCTG
q S1_92               8AFN8I??GG](>Q=CNG/G>@(;^X49RH

# Query sequences=100 normal letters=45801

TEST lastal -fBlastTab -pBL62 -b1 -F15 -D1e3 /tmp/last-test galGal3-M-32.fa
#
# a=11 b=1 A=11 B=1 F=15 e=36 d=29 x=35 y=31 z=35 D=1000 E=9.29879e+11
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.314572 K=0.0770249
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Fields: query id, subject id, % identity, alignment length, mismatches, gap opens, q. start, q. end, s. start, s. end, evalue, bit score
chrM	Q2LCP8	24.22	322	211	8	5259	6128	111	431	2.6e-19	84.9
chrM	Q2LCP8	27.27	88	60	2	11753	12007	102	188	0.0097	30.5
chrM	Q2LCP8	32.00	50	30	2	13893	14033	171	219	0.034	28.7
chrM	Q2LCP8	20.69	290	206	8	13446	14258	118	402	0.089	27.3
chrM	Q2LCP8	22.53	182	122	5	12314	12811	293	471	0.32	25.5
chrM	Q2LCP8	29.63	27	19	0	11768	11848	395	421	0.32	25.5
chrM	Q2LCP8	20.61	262	171	10	13572	12843	113	353	0.44	25
chrM	Q2LCP8	35.71	42	21	1	5607	5714	376	417	0.44	25
chrM	Q2LCP8	55.00	20	8	1	7362	7306	203	222	1.1	23.7
chrM	Q2LCP8	25.00	68	49	1	11678	11881	11	76	1.6	23.2
chrM	Q2LCP8	16.98	53	44	0	13953	14111	32	84	1.6	23.2
chrM	Q2LCP8	25.64	39	28	1	14081	14195	17	54	1.6	23.2
chrM	Q2LCP8	23.08	39	26	2	7710	7823	315	350	1.6	23.2
chrM	Q2LCP8	36.36	33	18	1	7065	7163	375	404	1.6	23.2
chrM	Q2LCP8	22.99	87	56	4	15931	16185	404	481	2.1	22.8
chrM	Q2LCP8	29.55	44	30	1	8445	8573	16	59	2.1	22.8
chrM	Q2LCP8	41.67	24	14	0	55	126	167	190	2.1	22.8
chrM	Q2LCP8	28.57	42	26	1	9224	9099	338	375	2.9	22.3
chrM	Q2LCP8	20.59	34	27	0	16579	16478	1	34	2.9	22.3
chrM	Q2LCP8	28.57	56	30	3	15331	15495	370	416	4	21.9
chrM	Q2LCP8	40.00	20	12	0	14566	14507	407	426	4	21.9
chrM	Q2LCP8	55.56	18	3	1	6123	6070	459	471	4	21.9
chrM	Q2LCP8	25.93	81	50	2	6693	6914	160	237	5.5	21.4
chrM	Q2LCP8	27.59	58	38	2	16660	16490	194	248	5.5	21.4
chrM	Q2LCP8	27.16	81	48	4	9282	9497	208	286	7.6	20.9
chrM	Q2LCP8	28.85	52	35	1	13083	13232	239	290	7.6	20.9
chrM	Q2LCP8	30.00	30	21	0	16312	16223	110	139	7.6	20.9
chrM	Q2LCP8	26.17	107	67	4	12449	12748	191	292	10	20.5
chrM	Q2LCP8	27.59	58	38	1	11798	11959	164	221	10	20.5
chrM	Q2LCP8	26.67	45	31	1	14562	14696	133	175	10	20.5
chrM	Q2LCP8	31.43	35	20	1	10944	10840	154	184	10	20.5
chrM	Q2LCP8	30.00	30	18	1	15928	15848	212	241	10	20.5
chrM	Q2LCP8	29.63	27	18	1	9354	9277	141	167	10	20.5
chrM	Q2LCP8	29.63	27	19	0	2512	2432	374	400	10	20.5
chrM	Q2LCP8	38.10	21	13	0	9342	9280	51	71	10	20.5
chrM	Q2LCP8	36.84	19	12	0	10031	10087	267	285	10	20.5
chrM	Q2LCP8	33.33	18	12	0	16589	16536	368	385	10	20.5
chrM	Q2LCP8	23.40	94	68	2	9651	9920	130	223	14	20
chrM	Q2LCP8	21.57	51	33	1	13195	13064	193	243	14	20
chrM	Q2LCP8	34.48	29	19	0	12881	12795	160	188	14	20
chrM	Q2LCP8	34.78	23	14	1	10307	10239	157	178	14	20
chrM	Q2LCP8	42.11	19	11	0	13299	13355	131	149	14	20
chrM	Q2LCP8	47.06	17	8	1	12569	12522	277	293	14	20
chrM	Q2LCP8	40.00	15	9	0	15562	15606	331	345	14	20
chrM	Q2LCP8	50.00	12	6	0	8526	8561	18	29	14	20
chrM	Q2LCP8	50.00	10	5	0	1314	1343	225	234	14	20
chr32	Q2LCP8	23.21	56	42	1	43	210	8	62	0.59	20.5
# Query sequences=2 normal letters=17803

TEST lastal -fBlastTab+ -pBL62 -b1 -F15 -D1e3 /tmp/last-test galGal3-M-32.fa
#
# a=11 b=1 A=11 B=1 F=15 e=36 d=29 x=35 y=31 z=35 D=1000 E=9.29879e+11
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.314572 K=0.0770249
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Fields: query id, subject id, % identity, alignment length, mismatches, gap opens, q. start, q. end, s. start, s. end, evalue, bit score, query length, subject length, raw score
chrM	Q2LCP8	24.22	322	211	8	5259	6128	111	431	2.6e-19	84.9	16775	491	179	3
chrM	Q2LCP8	27.27	88	60	2	11753	12007	102	188	0.0097	30.5	16775	491	59	2
chrM	Q2LCP8	32.00	50	30	2	13893	14033	171	219	0.034	28.7	16775	491	55	3
chrM	Q2LCP8	20.69	290	206	8	13446	14258	118	402	0.089	27.3	16775	491	52	3
chrM	Q2LCP8	22.53	182	122	5	12314	12811	293	471	0.32	25.5	16775	491	48	2
chrM	Q2LCP8	29.63	27	19	0	11768	11848	395	421	0.32	25.5	16775	491	48	2
chrM	Q2LCP8	20.61	262	171	10	13572	12843	113	353	0.44	25	16775	491	47	-3
chrM	Q2LCP8	35.71	42	21	1	5607	5714	376	417	0.44	25	16775	491	47	3
chrM	Q2LCP8	55.00	20	8	1	7362	7306	203	222	1.1	23.7	16775	491	44	-3
chrM	Q2LCP8	25.00	68	49	1	11678	11881	11	76	1.6	23.2	16775	491	43	2
chrM	Q2LCP8	16.98	53	44	0	13953	14111	32	84	1.6	23.2	16775	491	43	3
chrM	Q2LCP8	25.64	39	28	1	14081	14195	17	54	1.6	23.2	16775	491	43	2
chrM	Q2LCP8	23.08	39	26	2	7710	7823	315	350	1.6	23.2	16775	491	43	3
chrM	Q2LCP8	36.36	33	18	1	7065	7163	375	404	1.6	23.2	16775	491	43	3
chrM	Q2LCP8	22.99	87	56	4	15931	16185	404	481	2.1	22.8	16775	491	42	1
chrM	Q2LCP8	29.55	44	30	1	8445	8573	16	59	2.1	22.8	16775	491	42	3
chrM	Q2LCP8	41.67	24	14	0	55	126	167	190	2.1	22.8	16775	491	42	1
chrM	Q2LCP8	28.57	42	26	1	9224	9099	338	375	2.9	22.3	16775	491	41	-1
chrM	Q2LCP8	20.59	34	27	0	16579	16478	1	34	2.9	22.3	16775	491	41	-2
chrM	Q2LCP8	28.57	56	30	3	15331	15495	370	416	4	21.9	16775	491	40	1
chrM	Q2LCP8	40.00	20	12	0	14566	14507	407	426	4	21.9	16775	491	40	-2
chrM	Q2LCP8	55.56	18	3	1	6123	6070	459	471	4	21.9	16775	491	40	-3
chrM	Q2LCP8	25.93	81	50	2	6693	6914	160	237	5.5	21.4	16775	491	39	3
chrM	Q2LCP8	27.59	58	38	2	16660	16490	194	248	5.5	21.4	16775	491	39	-2
chrM	Q2LCP8	27.16	81	48	4	9282	9497	208	286	7.6	20.9	16775	491	38	3
chrM	Q2LCP8	28.85	52	35	1	13083	13232	239	290	7.6	20.9	16775	491	38	3
chrM	Q2LCP8	30.00	30	21	0	16312	16223	110	139	7.6	20.9	16775	491	38	-2
chrM	Q2LCP8	26.17	107	67	4	12449	12748	191	292	10	20.5	16775	491	37	2
chrM	Q2LCP8	27.59	58	38	1	11798	11959	164	221	10	20.5	16775	491	37	2
chrM	Q2LCP8	26.67	45	31	1	14562	14696	133	175	10	20.5	16775	491	37	3
chrM	Q2LCP8	31.43	35	20	1	10944	10840	154	184	10	20.5	16775	491	37	-3
chrM	Q2LCP8	30.00	30	18	1	15928	15848	212	241	10	20.5	16775	491	37	-2
chrM	Q2LCP8	29.63	27	18	1	9354	9277	141	167	10	20.5	16775	491	37	-3
chrM	Q2LCP8	29.63	27	19	0	2512	2432	374	400	10	20.5	16775	491	37	-2
chrM	Q2LCP8	38.10	21	13	0	9342	9280	51	71	10	20.5	16775	491	37	-3
chrM	Q2LCP8	36.84	19	12	0	10031	10087	267	285	10	20.5	16775	491	37	2
chrM	Q2LCP8	33.33	18	12	0	16589	16536	368	385	10	20.5	16775	491	37	-1
chrM	Q2LCP8	23.40	94	68	2	9651	9920	130	223	14	20	16775	491	36	3
chrM	Q2LCP8	21.57	51	33	1	13195	13064	193	243	14	20	16775	491	36	-2
chrM	Q2LCP8	34.48	29	19	0	12881	12795	160	188	14	20	16775	491	36	-1
chrM	Q2LCP8	34.78	23	14	1	10307	10239	157	178	14	20	16775	491	36	-1
chrM	Q2LCP8	42.11	19	11	0	13299	13355	131	149	14	20	16775	491	36	3
chrM	Q2LCP8	47.06	17	8	1	12569	12522	277	293	14	20	16775	491	36	-1
chrM	Q2LCP8	40.00	15	9	0	15562	15606	331	345	14	20	16775	491	36	1
chrM	Q2LCP8	50.00	12	6	0	8526	8561	18	29	14	20	16775	491	36	3
chrM	Q2LCP8	50.00	10	5	0	1314	1343	225	234	14	20	16775	491	36	3
chr32	Q2LCP8	23.21	56	42	1	43	210	8	62	0.59	20.5	1028	491	37	1
# Query sequences=2 normal letters=17803

TEST lastal -j4 -pBL62 -b1 -F0 -D1e3 /tmp/last-test galGal3-M-32.fa
#
# a=11 b=1 A=11 B=1 F=0 e=36 d=29 x=35 y=31 z=35 D=1000 E=8.72478e+11
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=4 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=0.321453 K=0.0925849
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=179 EG=6.2e-15 E=1e-19 fullScore=293
s Q2LCP8  110 321 +   491 LILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLI-MGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNL
s chrM   5258 870 + 16775 LICTVSLIMGTSITISSNH*ILA*TGLEINTLAIIPLISKSHHPRAIEATIKYFLTQSTASALILFSSITNA*STGQ*DITQL-----------NHPTSCLILTIAIAIKLGLVPFHF*FPEVLQGSSLITALLLSTLIKLPPITLLLLTSQSL----Nttllt---llaISSTLIGG*MG-LNQTQTRKILAFSSISHLG*IIIII--SYNPQLTI--LTFILYTIMTSTVFLSLAQIKVLKLSTLLIS*TKTPILNATVI---------LTLLSLAGLPPLTGFMPK*LIIQELTKQEITPiatiitilsllslfFYLRL
p                         $%%%&((*+-,+,++**)((((((*-~~~2-*(&$$$####$$%(+37559=:73/.---,++**)('''&''*++'%$###"$%%%$$##$$$!!!!"""##$%%&'*14667A?9-,--13232,*(&%%%$$$###$$""""""!!!""""###"!!!!!!##""""###%%%%%%%$"%&&&&&&'(*,--,+('&&%%%%%$##"###$$#"""!""""""###$%%%%%$#"!""""""!!!!!!!!!!!!!!!!!"###"""#!()+,-28@BDD??;:410**(%#"!!!!!!!!!!!!!!"""""##$%%%%%

a score=59 EG=4.7e+02 E=0.0079 fullScore=129
s Q2LCP8   101  87 +   491 KKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALN-KNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSL
s chrM   11752 255 + 16775 KRKRIFISTLIIIQPFII---LAFSATELILFYISFEATLIPTLILITR*GNQPERLSAGIYLLFYTLISSLPLLVSILYLHTNTGTL
p                          $$$%&%%&&'''&&%$$#$$"%&'()*+./../010/*)((&%%%%$#"#"###$$%&&&$""!!"""$%%&'~~65410011121*'

a score=55 EG=1.7e+03 E=0.029 fullScore=89.1
s Q2LCP8   170  49 +   491 TTILLLGIVS-IYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLIL
s chrM   13892 141 + 16775 TTCLCLGALSTLFAATCALTQNDIKKIIAFSTSS---QLGLIIVTIGLDL
p                          &(())*)&%$"&)+,../0//02.+*))('''%#'&$*.3100115~~'&

a score=52 EG=4.6e+03 E=0.076 fullScore=196
s Q2LCP8   117 285 +   491 IIGMLISMEAHNLITLFLSLE-ISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSE----ELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILIL
s chrM   13445 813 + 16775 liailTLTIANNIFLLFVG*EGVGIMSFLLIG**QGRAEANTAALQAIIYNRIGDIGLILSIA*L---ASSLNT*EIQQITHPNQTPTLPLLGLILAATGKSAQFGL---HP*LPAAIEGPTPVSALLHSSTIVVAGIFLLIRTHP--FLSSNKTALTTCLCLGALSTLFAATC-ALTQNDIKKIIAFSTSSQLGLIIVTIGLDLPQLAFLHISTHAFFKAILFLCSGLIIHSL-------NGEQDIRKIGCLQKTLPITTSCLTIGNLALI---GTPFLAGFYSKDLII
p                          #$$$$$$$%)+,,,,--+*(("""""""""""""""!!""""""#""""""""""""######"""""""######$#$$$$$$#""""""#$$$$$$$$$$$$$%$"""##$%%%%&''%###""""""""!""""#######"""""##$%%%%%&&&&&&&&''(('''&$"$'()(()))*+,+*&%$$$$$$$$###"""""""""!!!!!!!!!!!!!!!!!!!!!!!"""""""$$###########""""""!!!!!!!!!!!!"!!+,-,-./57~~,+)&

a score=48 EG=1.7e+04 E=0.28 fullScore=166
s Q2LCP8   292 179 +   491 LRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQL-KNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYM--VLGRVYLTMLAFFLSVGVMIYYMNLVKIIIIDKVQTHEQGVAELEITSKPTKGGRRIVLGVMWLI
s chrM   12313 498 + 16775 LRQTDLKSLIAYSSVSHMGLV---IAASIIQTQ*SFSGAIILIISHGLT--SSLLFCLANTNYERTHSRILILTRGLQPLLPLISV**LLANLTNMALPPTTNLIAELTIIVALFN*SSPTIILTGTATLLTASYTLYIL-----------LSTQRGTLPSHITTTPNSNTREHLLITLHII
p                          )./.-.--/3793.+('&&%$""""####""!!!!!!!!!!!!!!"%%$"""####""####""""""""""""!!!!!!!!!!!!!!"""""""#&~~~;<=53/,)''&$#""$%!!"#$$%&%&&&&&&%%$$$$"!%%%&%$$$%&%!""$'*)))*,/0/./+))('%$##"""""!

a score=48 EG=1.7e+04 E=0.28 fullScore=85.1
s Q2LCP8   394 27 +   491 FISKILILLPYMVLGRVYLTMLAFFLS
s chrM   11767 81 + 16775 FISTLIIIQPFIILAFSATELILFYIS
p                         ~~~63333362-+)&$$$$$$%%%%%%

a score=47 EG=2.3e+04 E=0.38 fullScore=74.5
s Q2LCP8  375  42 +   491 AIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLA
s chrM   5606 108 + 16775 SLITALLLSTLIKLPPIT------LLLLTSQSLNttlltlla
p                         #$%%&''()*+,/~~~+('))*)&$%&'''((****+,,+*)

a score=43 EG=8.4e+04 E=1.4 fullScore=85.4
s Q2LCP8    10  66 +   491 MIKYSIYILPLIILIVLSISIKKDVQRVHIIIQSLKLtlivimiviGIEESI--YVKLNGHLIKTELI
s chrM   11677 204 + 16775 LLVLSCWFLPLIIIASQGHLQHEPHKRKRIFISTLIIIQPFIILAFSATELILFYISFEATLIPTLIL
p                          ##$%(),.~~~~~'%#"""""""""#$$$%%%$#"""!!!!""""""""#""$#&''''''''&%#""

a score=43 EG=8.4e+04 E=1.4 fullScore=92.9
s Q2LCP8    31  53 +   491 KKDVQRVHIIIQSLKLtlivimiviGIEESIYVKLNGHLIKTELIKLFEYLLL
s chrM   13952 159 + 16775 QNDIKKIIAFSTSSQLGLIIVTIGLDLPQLAFLHISTHAFFKAILFLCSGLII
p                          $&****(''''(*+-23~~/+)('('((((()('''''$#"!!!!!!!!!!!!

a score=43 EG=8.4e+04 E=1.4 fullScore=89.4
s Q2LCP8  314  36 +   491 LMLAGSMSEELMVNSVYYLI---NYIIGLTVLMSLIMGF
s chrM   7709 114 + 16775 IVLANS-SLDIALHDTYYVVAHFHYVLSMGAVFAILAGF
p                         $$%%$$"$$&''(**+--)&&(&&+----,,-./013~~

a score=43 EG=8.4e+04 E=1.4 fullScore=93.2
s Q2LCP8  374 30 +   491 GAIVYILVLMYLAGLPPM---TNFISKILILLP
s chrM   7064 99 + 16775 gasvdlaifhylagVSSILGAINFITTIINIKP
p                        )**++,-./0~~~~*'%$$%$$*,,+*)(&%%%

a score=42 EG=1.2e+05 E=1.9 fullScore=83.6
s Q2LCP8   15  44 +   491 IYILPLIILIVLSISIKKDVQRVHIIIQSLKLtlivimiviGIE
s chrM   8444 129 + 16775 LYLLTLILIEKLS-SNTVDAQEVELI*TILPAIVlvllalpslq
p                         ',/25~~,*((('"""#$'''''&%$""""!!!!!!!!!!!!!!

a score=42 EG=1.2e+05 E=1.9 fullScore=57.4
s Q2LCP8 166 24 +   491 GGIATTILLLGIVSIYKSTGSLMY
s chrM    54 72 + 16775 GGILCIIVHTFIYHIYYGTGNIYY
p                       ~~~.+**)))*+,.2435871-*)

a score=42 EG=1.2e+05 E=1.9 fullScore=107
s Q2LCP8   403  78 +   491 PYMVLGRV----YLT-MLAFFLSVGVM----IYYMNLVKIIIIDKVQTHEQGVAELEITSKPTKGGRRIVLGVMWLIFSQLYLDEIL
s chrM   15930 255 + 16775 PFIIIGQIASLSYFTILLILFPTIGTLENKILNY*NT--LIVYEKHWSCKPKTEDSTLLRVSEKEGSNLHLQLPKLVFSNKLLSETL
p                          &&''''&$%%%$$$$""#$%&'())&$$$$""####"""#$$$$$"""""!!!!!!!"""""#$%(()**++++,17~~.,+,+*'&

a score=40 EG=2.2e+05 E=3.7 fullScore=89.2
s Q2LCP8   369  47 +   491 VINMFGAIVYILVLM-------YLAGLPPMTNFISKILILLPYMVLG--RVYLTML
s chrM   15330 165 + 16775 ITNLFSAIPYIGHTLVE*A*GGFSVDNPTLTRFFA-LHFLLPFAIAGITIIHLTFL
p                          $%,069~~2/)#""!"#%%&%$""##%*+-.-,(%#$$&),20-+)(""!"###""

a score=39 EG=3.1e+05 E=5.1 fullScore=84.1
s Q2LCP8  159  78 +   491 GLKYYIIG---GIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGA
s chrM   6692 222 + 16775 GTLYLIFGTWAGIAGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAF-------VIIFFIVIPIMIGGFGN*LVPLIIGA
p                         %%&('('%,*&~~~.-+)('&&&&%&&')+++*(((&%###"""""""$#$##"""###$$%%%%&&''('''(('''&'&

a score=38 EG=4.2e+05 E=7.1 fullScore=100
s Q2LCP8  207  79 +   491 MGIALIVLGLILKLGIAPFHG--WLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLV
s chrM   9281 216 + 16775 LGIPLILPslllpalllpsPGNRWI------NNRLSTIQL*FTH-LITKQLITPL--NKAGHK*ALLLTSLILILLSINLL
p                         )~~52/,+++*)&$$$###""""+'""###$!!"""""""!!!!!!!!!!!!!!!##!!"""""#####"""""!!!!!!!

a score=38 EG=4.2e+05 E=7.1 fullScore=68.1
s Q2LCP8   238  52 +   491 MLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTI
s chrM   13082 150 + 16775 LLLNTlttlt--lltlltpiILPPLLNLKNSPISITKTIKTAFLISLIPTTI
p                          """"""""""##)-~~*%##""""""""""""""""""""""""""""""""

a score=37 EG=5.9e+05 E=9.8 fullScore=86.8
s Q2LCP8    23 31 +   491 LIVLSISIKKDVQRVHIIIQSLKLtlivimi
s chrM   14102 93 + 16775 LIIHSLNGEQDIRKIGCLQKTLPITTSCLTI
p                         ~~945420247520.+*)(((('&&#""""!

a score=37 EG=5.9e+05 E=9.8 fullScore=104
s Q2LCP8   132  43 +   491 LFLSLEISSICFYILALNKNSRKGIEGGLKYY--IIGGIATTILL
s chrM   14561 135 + 16775 IILALELSSLSYSLTPPKHNPLINFSSSLGYFNPLTHRISPSILL
p                          $&*.~~;63.)'&%%$$$$%$$$%%%&&&&&%##"""########

a score=37 EG=5.9e+05 E=9.8 fullScore=131
s Q2LCP8   163  58 +   491 YIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKL
s chrM   11797 162 + 16775 FIILAFSATELIL----FYISFEATLIPTLILITR*GNQPERLSAGIYLLFYTLISSL
p                          #############""""!""""""""###$$$$$$$%%&'(.124~~0.+*)(((&%%

a score=37 EG=5.9e+05 E=9.8 fullScore=129
s Q2LCP8   190 102 +   491 TDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvt-lmvlinlyq----nliiytnaimftngliILILVTLVVGTIGS
s chrM   12448 300 + 16775 TSSLLFCLANTNYERTHSRI------LILTRGLQPLLP-LISV**LLANLTNMALPPTTNLIAELTIIVALFN*SSPTIILTGTATLLTASYTLYILLSTQRGTLPS
p                          ###$$%&)+~~+(((''&%%"""###""###$$$$#""$####""""""""###########""########"###"""""""$%&''(''&&&''''&&&&'&%$#

a score=37 EG=5.9e+05 E=9.8 fullScore=64.5
s Q2LCP8   266 19 +   491 ytnaimftngliILILVTL
s chrM   10030 57 + 16775 yssttlltIGLLSILLVML
p                         &'(()+,/1~~-*)))(&%

a score=36 EG=8.1e+05 E=14 fullScore=78.7
s Q2LCP8   17 12 +   491 ILPLIILIVLSI
s chrM   8525 36 + 16775 ILPAIVlvllal
p                        ~~~320/-,*(&

a score=36 EG=8.1e+05 E=14 fullScore=100
s Q2LCP8  129  94 +   491 LITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGI
s chrM   9650 270 + 16775 LIPALIIIETTSLLIRPLALGVRLTANLTAG--HLLIQlistatial--lpimpsisaltalilflltilevaVAIIQAYVFVLLLSLYLQENI
p                         &'''(()+../0/.../~~~*'&%%%%%$$$"#"""#####"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""##############"""

a score=36 EG=8.1e+05 E=14 fullScore=63.1
s Q2LCP8   130 19 +   491 ITLFLSLEISSICFYILAL
s chrM   13298 57 + 16775 IPISLKIDIYSIIFFPIAL
p                         $$%&'()+,.~~640,++(

a score=36 EG=8.1e+05 E=14 fullScore=48
s Q2LCP8  224 10 +   491 PFHGWLIDVY
s chrM   1313 30 + 16775 PFYWFLLDIY
p                        ~~5..2472-

a score=36 EG=8.1e+05 E=14 fullScore=95.5
s Q2LCP8   330 15 +   491 YYLINYIIGLTVLMS
s chrM   15561 45 + 16775 YYSFKDILGLTLILT
p                         *++,,-26~~~+('%

a score=44 EG=6.1e+04 E=1 fullScore=66.4
s Q2LCP8  202 20 +   491 DYRIQMGIALIVLGLILKLG
s chrM   9413 57 - 16775 DRRIrigvg-iglglllqlG
p                        )+-..--*'#$'~~~:620+

a score=41 EG=1.6e+05 E=2.7 fullScore=59.2
s Q2LCP8   0  34 +   491 MVCLFENLMNMIKYSIYILPLIILIVLSISIKKD
s chrM   196 102 - 16775 LVSLGVSFVSLALFLVYLGGMLVVFVYSVSLAAD
p                        %~41,,,,,,,,,-./0.,,--...00321.+)(

a score=41 EG=1.6e+05 E=2.7 fullScore=64.6
s Q2LCP8  337  38 +   491 IGLTVLMSLIMGFLRLNDRG----TIEDIYQLKNMWVINMFG
s chrM   7551 126 - 16775 VGLVVVILFAGLFVRVNERSLGWISREKVNQVRSMMENHGFG
p                         '~~+)'%$####*-444/+$%$%$"#'(**++**)%%$$$%$

a score=40 EG=2.2e+05 E=3.7 fullScore=56.8
s Q2LCP8  406 20 +   491 VLGRVYLTMLAFFLSVGVMI
s chrM   2209 60 - 16775 IIPrvvtmmaavfvmvgivi
p                        $&'~~+))**,-0//0/+(&

a score=40 EG=2.2e+05 E=3.7 fullScore=60.6
s Q2LCP8   458 13 +   491 GGRRIVLGV-----MWLI
s chrM   10652 54 - 16775 GGRRIGLGVIVL**LWLL
p                         ~~~~~100*#&'((#&%$

a score=39 EG=3.1e+05 E=5.1 fullScore=88.3
s Q2LCP8 193  55 +   491 LVIVMENTDDYRIQMGI---ALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTIT
s chrM   115 171 - 16775 VLAVASNPSPYYGVVGLVVASVIGCGWLVSLGVSFVSLALFLVYLG-GMLVVFVYSVS
p                        !!!""#######"""#"!""""##%'(*,0~~,'$$$$$%%&()'&$(**))(%%$$#

a score=38 EG=4.2e+05 E=7.1 fullScore=77.6
s Q2LCP8 109 30 +   491 GLILIYSSIIGMLISMEAHNLITLFLSLEI
s chrM   463 90 - 16775 GVAVFYSCgvglflvag*glLLALFVVLEL
p                       ,--/1~~0.//*'&%$$$$%'()*+*))(%

a score=38 EG=4.2e+05 E=7.1 fullScore=103
s Q2LCP8  217  41 +   491 ILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvli
s chrM   3475 120 - 16775 ILKLGINCHSQWVAMLSAPEWMKIVVGIRLIRKAV-LMVLV
p                         ~~~~~~*(''(*&$###""########$$$$%%$$"#####

a score=37 EG=5.9e+05 E=9.8 fullScore=52.8
s Q2LCP8   50 21 +   491 vimiviGIEESIYVKLNGHLI
s chrM   7433 63 - 16775 LVMEVGGLEEGVMGGLEGFLV
p                        #%''()/5~~41-,,---+*'

a score=37 EG=5.9e+05 E=9.8 fullScore=56
s Q2LCP8  112 32 +   491 LIYSSIIGMLISMEAHNLITLFLSLEISSICF
s chrM   3203 96 - 16775 LCWLQLVLVIIQ*EGMT*FLLLLILQIGGICY
p                        ""###$$$$%%%%&&%%%%&'()*-0347~~'

a score=37 EG=5.9e+05 E=9.8 fullScore=61.4
s Q2LCP8  140 27 +   491 SICFYILALNKNSRKGIEGGLKYYIIG
s chrM   7421 78 - 16775 SIGFLVMEVG-GLEEGVMGGLEGFLVG
p                        #$$%$$$$###"#%(.11~~~4/.-,)

a score=37 EG=5.9e+05 E=9.8 fullScore=70.2
s Q2LCP8  153  31 +   491 RKGIEGGLKYYIIGGI----ATTILLLGIVSIYKS
s chrM   5831 105 - 16775 RIGLRMGVGLILVGQIRIRTVTVFLCLGLFGLVKS
p                         %%''''''''()**'&$&&$"$%&(*~~40/.--)

a score=37 EG=5.9e+05 E=9.8 fullScore=60.2
s Q2LCP8 211 30 +   491 LIVLGLILKLGIAPFHGWLIDVYEGAGMLM
s chrM   847 81 - 16775 VLLVGFRFRLG*---EGWLLEVRIGFGRVV
p                       "##$''''(((#%)$&~~~852-,,))&%#

a score=37 EG=5.9e+05 E=9.8 fullScore=57.8
s Q2LCP8 367 18 +   491 MWVINMFGAIVYILVLMY
s chrM   186 54 - 16775 MWVVSEFGCFFCFLGVIF
p                       ~~~;6331)&$$##""""

a score=37 EG=5.9e+05 E=9.8 fullScore=71.2
s Q2LCP8   373 27 +   491 FGAIVYILVLMYLAGLPPMTNFISKIL
s chrM   14263 81 - 16775 FSLLFHLSLAVQLASIAPG*SFLSPIL
p                         ##$$$%%%&'(+~~9633/.01.,'&$

a score=36 EG=8.1e+05 E=14 fullScore=56.5
s Q2LCP8  156 22 +   491 IEGGLKY-YIIGGIATTILLLGI
s chrM   6468 69 - 16775 LQGGLGV*LLLGAIGPPVLVLGL
p                        #&(((%$##%'+,../1468~~'

a score=36 EG=8.1e+05 E=14 fullScore=64.2
s Q2LCP8  159 29 +   491 GLKYYIIGGIATTILLLGIVSIYKSTGSL
s chrM   3894 87 - 16775 GLNYVCIEGFLRLVLV*G*VLVWG*CGGL
p                        ~~9621312/.--..--0..--,*)))'%

a score=36 EG=8.1e+05 E=14 fullScore=76.1
s Q2LCP8  192  51 +   491 LLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTF
s chrM   3580 132 - 16775 LMVLVMDMGEFFRFRRGGRIIGVRRVSSVNV-------VRVLRSSGVSITF
p                         ')-0~~2/./.01/-+*&%$$##""""""""##$$%$#$$%%&&'''&&&&

a score=36 EG=8.1e+05 E=14 fullScore=65.8
s Q2LCP8  276 17 +   491 liILILVTLVVGTIGSL
s chrM   4206 48 - 16775 lviiilism-vggvggl
p                        '((((('%##~~430*'

a score=37 EG=5.9e+05 E=0.55 fullScore=64.1
s Q2LCP8  7  55 +  491 LMNMIKYSIYILPLIILIVLSISIKKDVQRVHIIIQSLKLtliv-imiviGIEESI
s chr32  42 168 + 1028 ILNLSQQLTLTHpltqsialslsltlsqtlaltiaptpaltvmvnlmiiltltqtl
p                      #$$$$$$#$$%&~~-+*+***))'$#"""!""""""###$$###"#$$$$$$$##"

# Query sequences=2 normal letters=17803

TEST lastal -M /tmp/last-test Q5GS15.fa
#
# a=0 b=4 A=0 B=4 e=14 d=8 x=13 y=7 z=13 D=1e+06 E=4.91231e+08
# R=01 u=0 s=1 S=0 M=1 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.670044 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=491
# lambda=1.49001 K=0.563273
#
#    A  C  D  E  F  G  H  I  K  L  M  N  P  Q  R  S  T  V  W  Y
# A  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# C -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# D -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# E -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# F -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# G -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# H -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# I -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# K -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# L -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3
# M -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3 -3
# N -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3 -3
# P -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3 -3
# Q -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3 -3
# R -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3 -3
# S -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3 -3
# T -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3 -3
# V -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3 -3
# W -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2 -3
# Y -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3  2
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# Query sequences=1 normal letters=465

TEST lastal -S1 -pBISF -Q1 -e120 -f0 -j4 /tmp/last-test bs100.fastq
#
# a=21 b=9 A=21 B=9 e=120 d=64 x=119 y=44 z=119 D=1e+06 E=2.97648e+07
# R=10 u=0 s=2 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.37109 j=4 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=0.22862 K=0.399124
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   6 -18 -18   1   3 -18 -18   0   1   3
# C -18   6 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# G -18 -18   6 -18 -18   6   1 -18   3 -18   1   0 -18   3
# T -18 -18 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# M   3   3 -18   0   3 -18  -2   1   0   0  -2   0   1   0
# S -18   3   3   0 -18   3   1  -2   0   0   1   0  -2   0
# K -18 -18   3   0 -18   3   1  -2   0   0   1   0  -2   0
# W   3 -18 -18   0   3 -18  -2   1   0   0  -2   0   1   0
# R   3 -18   3 -18   3   3  -2  -2   3 -18  -2   0  -2   3
# Y -18   3 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# B -18   1   1   1 -18   1   1  -1  -2   1   1   0  -1  -2
# D   1 -18   1  -2   1   1  -1  -1   1  -2  -1   0  -1   1
# H   1   1 -18   1   1 -18  -1   1  -2   1  -1   0   1  -2
# V   1   1   1  -2   1   1  -1  -1   1  -2  -1   0  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
441	chrM	13913	87	+	16571	0	0	87	-	87	87	EG=2.2e-31	E=1.8e-42	fullScore=444
429	chrM	1543	87	+	16571	1	0	87	+	87	87	EG=3.3e-30	E=1e-40	fullScore=432
370	chrM	12300	84	+	16571	2	3	84	+	87	84	EG=2.4e-24	E=6e-33	fullScore=377
258	chrM	12453	69	+	16571	3	18	69	-	87	69	EG=3.2e-13	E=8.5e-21	fullScore=272
432	chrM	5737	87	+	16571	4	0	87	+	87	87	EG=1.7e-30	E=3.7e-41	fullScore=435
283	chrM	6106	67	+	16571	5	20	67	-	87	67	EG=1e-15	E=2.2e-23	fullScore=295
380	chrM	11106	87	+	16571	6	0	87	+	87	87	EG=2.5e-25	E=3.6e-34	fullScore=384
346	chrM	143	85	+	16571	7	2	85	-	87	85	EG=5.8e-22	E=3.8e-30	fullScore=355
377	chrM	5006	87	+	16571	8	0	87	+	87	87	EG=4.9e-25	E=8.4e-34	fullScore=380
387	chrM	7901	87	+	16571	9	0	87	+	87	87	EG=4.9e-26	E=4.7e-35	fullScore=391
211	chrM	3290	63	+	16571	10	0	63	+	87	63	EG=1.5e-08	E=5.6e-16	fullScore=225
403	chrM	15997	87	+	16571	11	0	87	-	87	87	EG=1.3e-27	E=3.9e-37	fullScore=406
369	chrM	3253	87	+	16571	12	0	87	+	87	87	EG=3e-24	E=7.9e-33	fullScore=373
381	chrM	1368	87	+	16571	13	0	87	-	87	87	EG=2e-25	E=2.7e-34	fullScore=383
379	chrM	6781	86	+	16571	14	1	86	-	87	86	EG=3.1e-25	E=4.8e-34	fullScore=385
358	chrM	12881	86	+	16571	15	1	86	+	87	86	EG=3.8e-23	E=1.6e-31	fullScore=363
384	chrM	360	87	+	16571	16	0	87	-	87	87	EG=9.8e-26	E=1.1e-34	fullScore=389
321	chrM	10589	87	+	16571	18	0	87	+	87	87	EG=1.8e-19	E=2.1e-27	fullScore=325
372	chrM	14174	87	+	16571	19	0	87	+	87	87	EG=1.5e-24	E=3.4e-33	fullScore=373
341	chrM	5859	87	+	16571	20	0	87	+	87	87	EG=1.8e-21	E=1.4e-29	fullScore=346
387	chrM	80	87	+	16571	21	0	87	+	87	87	EG=4.9e-26	E=4.7e-35	fullScore=391
386	chrM	15082	82	+	16571	22	5	82	-	87	82	EG=6.2e-26	E=6.3e-35	fullScore=394
386	chrM	3176	87	+	16571	23	0	87	-	87	87	EG=6.2e-26	E=6.3e-35	fullScore=392
378	chrM	10081	87	+	16571	24	0	87	+	87	87	EG=3.9e-25	E=6.3e-34	fullScore=383
337	chrM	1208	87	+	16571	25	0	87	+	87	87	EG=4.6e-21	E=3.8e-29	fullScore=342
294	chrM	4660	75	+	16571	26	0	75	+	87	75	EG=8.5e-17	E=1.5e-24	fullScore=306
378	chrM	14124	87	+	16571	27	0	87	+	87	87	EG=3.9e-25	E=6.3e-34	fullScore=382
405	chrM	918	87	+	16571	28	0	87	+	87	87	EG=8.1e-28	E=2.1e-37	fullScore=409
345	chrM	4775	81	+	16571	29	0	81	+	87	81	EG=7.3e-22	E=4.9e-30	fullScore=353
357	chrM	6055	86	+	16571	30	0	86	+	87	86	EG=4.7e-23	E=2.1e-31	fullScore=362
385	chrM	2794	86	+	16571	31	0	86	+	87	86	EG=7.8e-26	E=8.5e-35	fullScore=392
369	chrM	8060	87	+	16571	32	0	87	+	87	87	EG=3e-24	E=7.9e-33	fullScore=372
173	chrM	12857	72	+	16571	33	0	72	+	87	72	EG=8.8e-05	E=4.1e-12	fullScore=186
423	chrM	3260	87	+	16571	34	0	87	-	87	87	EG=1.3e-29	E=7.1e-40	fullScore=427
363	chrM	4796	87	+	16571	35	0	87	+	87	87	EG=1.2e-23	E=4.1e-32	fullScore=369
364	chrM	14459	87	+	16571	36	0	87	+	87	87	EG=9.5e-24	E=3.1e-32	fullScore=370
375	chrM	10096	87	+	16571	37	0	87	+	87	87	EG=7.7e-25	E=1.5e-33	fullScore=379
206	chrM	3664	49	+	16571	38	38	49	-	87	49	EG=4.6e-08	E=1.8e-15	fullScore=220
378	chrM	7893	87	+	16571	39	0	87	+	87	87	EG=3.9e-25	E=6.3e-34	fullScore=381
363	chrM	5186	87	+	16571	40	0	87	+	87	87	EG=1.2e-23	E=4.1e-32	fullScore=366
304	chrM	10193	87	+	16571	41	0	87	+	87	87	EG=8.6e-18	E=1.4e-25	fullScore=310
406	chrM	5520	87	+	16571	42	0	87	+	87	87	EG=6.4e-28	E=1.6e-37	fullScore=409
224	chrM	14308	48	+	16571	43	39	48	-	87	48	EG=7.6e-10	E=2.6e-17	fullScore=232
137	chrM	6497	39	+	16571	44	48	39	-	87	39	EG=0.33	E=1.8e-08	fullScore=150
385	chrM	9710	79	+	16571	45	8	79	-	87	79	EG=7.8e-26	E=8.5e-35	fullScore=390
390	chrM	12475	87	+	16571	46	0	87	+	87	87	EG=2.5e-26	E=2e-35	fullScore=393
365	chrM	6330	87	+	16571	47	0	87	+	87	87	EG=7.6e-24	E=2.4e-32	fullScore=368
372	chrM	6202	86	+	16571	48	0	86	+	87	86	EG=1.5e-24	E=3.4e-33	fullScore=379
369	chrM	12896	87	+	16571	49	0	87	+	87	87	EG=3e-24	E=7.9e-33	fullScore=373
155	chrM	6025	36	+	16571	50	0	36	+	87	36	EG=0.0054	E=2.7e-10	fullScore=171
378	chrM	9664	87	+	16571	51	0	87	+	87	87	EG=3.9e-25	E=6.3e-34	fullScore=382
132	chrM	10545	43	+	16571	52	0	43	+	87	43	EG=1	E=5.8e-08	fullScore=143
386	chrM	14458	87	+	16571	53	0	87	+	87	87	EG=6.2e-26	E=6.3e-35	fullScore=390
388	chrM	6397	86	+	16571	54	1	86	-	87	86	EG=3.9e-26	E=3.5e-35	fullScore=394
399	chrM	36	87	+	16571	55	0	87	+	87	87	EG=3.2e-27	E=1.3e-36	fullScore=402
417	chrM	9569	87	+	16571	56	0	87	-	87	87	EG=5.2e-29	E=4.9e-39	fullScore=421
313	chrM	11219	85	+	16571	57	0	85	+	87	85	EG=1.1e-18	E=1.5e-26	fullScore=319
409	chrM	12834	85	+	16571	58	2	85	-	87	85	EG=3.2e-28	E=6.1e-38	fullScore=414
356	chrM	9915	84	+	16571	59	3	84	-	87	84	EG=5.9e-23	E=2.7e-31	fullScore=365
386	chrM	12614	87	+	16571	60	0	87	-	87	87	EG=6.2e-26	E=6.3e-35	fullScore=391
207	chrM	16062	72	+	16571	63	0	72	+	87	72	EG=3.7e-08	E=1.4e-15	fullScore=219
348	chrM	13007	87	+	16571	64	0	87	+	87	87	EG=3.7e-22	E=2.2e-30	fullScore=352
362	chrM	12002	86	+	16571	65	0	86	+	87	86	EG=1.5e-23	E=5.4e-32	fullScore=369
378	chrM	14921	87	+	16571	66	0	87	+	87	87	EG=3.9e-25	E=6.3e-34	fullScore=382
401	chrM	9520	87	+	16571	67	0	87	-	87	87	EG=2e-27	E=7.2e-37	fullScore=406
401	chrM	15820	87	+	16571	68	0	87	-	87	87	EG=2e-27	E=7.2e-37	fullScore=403
358	chrM	5660	87	+	16571	69	0	87	+	87	87	EG=3.8e-23	E=1.6e-31	fullScore=364
343	chrM	7675	84	+	16571	70	0	84	+	87	84	EG=1.2e-21	E=8.2e-30	fullScore=351
354	chrM	15444	87	+	16571	71	0	87	+	87	87	EG=9.4e-23	E=4.6e-31	fullScore=360
270	chrM	11021	84	+	16571	72	0	84	+	87	84	EG=2.1e-14	E=4.9e-22	fullScore=279
324	chrM	14598	86	+	16571	73	1	86	-	87	86	EG=8.9e-20	E=1e-27	fullScore=330
233	chrM	4239	66	+	16571	74	21	66	-	87	66	EG=9.7e-11	E=3.1e-18	fullScore=245
400	chrM	6363	85	+	16571	75	2	85	-	87	85	EG=2.5e-27	E=9.8e-37	fullScore=405
358	chrM	4155	87	+	16571	76	0	87	+	87	87	EG=3.8e-23	E=1.6e-31	fullScore=364
381	chrM	10777	87	+	16571	77	0	87	-	87	87	EG=2e-25	E=2.7e-34	fullScore=385
332	chrM	11894	85	+	16571	78	0	85	+	87	85	EG=1.4e-20	E=1.4e-28	fullScore=340
369	chrM	10826	87	+	16571	79	0	87	+	87	87	EG=3e-24	E=7.9e-33	fullScore=373
362	chrM	8356	87	+	16571	81	0	87	+	87	87	EG=1.5e-23	E=5.4e-32	fullScore=367
431	chrM	9713	87	+	16571	82	0	87	-	87	87	EG=2.1e-30	E=5.1e-41	fullScore=435
338	chrM	1726	87	+	16571	83	0	87	-	87	87	EG=3.6e-21	E=2.9e-29	fullScore=341
318	chrM	11566	86	+	16571	85	0	86	+	87	86	EG=3.5e-19	E=4.4e-27	fullScore=323
363	chrM	9190	85	+	16571	86	2	85	-	87	85	EG=1.2e-23	E=4.1e-32	fullScore=371
375	chrM	15011	87	+	16571	87	0	87	+	87	87	EG=7.7e-25	E=1.5e-33	fullScore=379
363	chrM	715	87	+	16571	88	0	87	+	87	87	EG=1.2e-23	E=4.1e-32	fullScore=367
358	chrM	8407	87	+	16571	89	0	87	+	87	87	EG=3.8e-23	E=1.6e-31	fullScore=362
278	chrM	1598	66	+	16571	90	21	66	-	87	66	EG=3.3e-15	E=7.2e-23	fullScore=289
415	chrM	3741	87	+	16571	91	0	87	-	87	87	EG=8.2e-29	E=9.3e-39	fullScore=418
372	chrM	5909	83	+	16571	92	0	83	+	87	83	EG=1.5e-24	E=3.4e-33	fullScore=380
220	chrM	3782	49	+	16571	93	38	49	-	87	49	EG=1.9e-09	E=6.7e-17	fullScore=233
329	chrM	12018	87	+	16571	94	0	87	+	87	87	EG=2.8e-20	E=2.9e-28	fullScore=336
289	chrM	131	74	+	16571	95	0	74	+	87	74	EG=2.7e-16	E=5.2e-24	fullScore=302
381	chrM	3991	87	+	16571	96	0	87	+	87	87	EG=2e-25	E=2.7e-34	fullScore=384
259	chrM	569	65	+	16571	97	0	65	+	87	65	EG=2.5e-13	E=6.7e-21	fullScore=272
223	chrM	6938	71	+	16571	98	16	71	-	87	71	EG=9.5e-10	E=3.3e-17	fullScore=235
290	chrM	8939	87	+	16571	99	0	87	-	87	87	EG=2.1e-16	E=4.1e-24	fullScore=302
# Query sequences=100 normal letters=8700

TEST lastal -r1 -D1000 -fTAB -K2 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=15 d=13 x=14 y=9 z=14 D=1000 E=2.43016e+10
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 K=2 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
847	chrM	5902	1595	+	16571	chrM	6645	1589	+	16775	450,3:0,1085,3:0,54	EG=0	E=0
524	chrM	14756	1124	+	16571	chrM	14904	1124	+	16775	1124	EG=3.9e-237	E=6.2e-242
426	chrM	10944	1266	+	16571	chrM	11669	1266	+	16775	1266	EG=1.8e-190	E=2.8e-195
404	chrM	9109	918	+	16571	chrM	9824	918	+	16775	918	EG=5.3e-180	E=8.4e-185
366	chrM	3334	920	+	16571	chrM	4097	920	+	16775	920	EG=6.5e-162	E=1e-166
259	chrM	7524	722	+	16571	chrM	8266	721	+	16775	45,0:1,17,0:1,154,3:0,503	EG=5.6e-111	E=9.1e-116
249	chrM	13168	681	+	16571	chrM	13901	681	+	16775	681	EG=3.2e-106	E=5.3e-111
242	chrM	12461	671	+	16571	chrM	13197	668	+	16775	505,3:0,163	EG=7e-103	E=1.1e-107
193	chrM	4321	800	+	16571	chrM	5093	798	+	16775	66,3:0,69,0:1,662	EG=1.5e-79	E=2.4e-84
160	chrM	2908	255	+	16571	chrM	3629	255	+	16775	146,0:1,53,1:0,55	EG=7.6e-64	E=1.2e-68
149	chrM	1042	401	+	16571	chrM	1702	407	+	16775	114,0:2,92,0:4,33,0:1,27,0:1,45,1:0,32,1:0,56	EG=1.3e-58	E=2.1e-63
122	chrM	2409	334	+	16571	chrM	3112	338	+	16775	41,2:0,38,0:1,32,0:2,37,0:3,184	EG=9.3e-46	E=1.5e-50
114	chrM	5208	523	+	16571	chrM	5978	529	+	16775	233,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80	EG=6e-42	E=9.9e-47
108	chrM	595	352	+	16571	chrM	1243	356	+	16775	56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,18	EG=4.3e-39	E=7.1e-44
95	chrM	1742	281	+	16571	chrM	2432	295	+	16775	26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83	EG=6.6e-33	E=1.1e-37
92	chrM	10106	346	+	16571	chrM	10825	349	+	16775	299,0:3,47	EG=1.8e-31	E=2.9e-36
90	chrM	10518	272	+	16571	chrM	11243	272	+	16775	272	EG=1.6e-30	E=2.6e-35
72	chrM	8638	216	+	16571	chrM	9353	216	+	16775	216	EG=5.9e-22	E=9.8e-27
67	chrM	8897	151	+	16571	chrM	9612	151	+	16775	151	EG=1.4e-19	E=2.4e-24
60	chrM	12211	128	+	16571	chrM	12944	128	+	16775	128	EG=3e-16	E=5.1e-21
48	chrM	14425	318	+	16571	chrM	16456	319	+	16775	247,0:2,54,1:0,16	EG=1.6e-10	E=2.6e-15
40	chrM	1546	60	+	16571	chrM	2216	60	+	16775	60	EG=1e-06	E=1.7e-11
36	chrM	5764	129	+	16571	chrM	6510	134	+	16775	78,0:2,33,0:3,18	EG=8.1e-05	E=1.4e-09
33	chrM	1450	53	+	16571	chrM	2122	53	+	16775	53	EG=0.0022	E=3.6e-08
26	chrM	12989	94	+	16571	chrM	5538	94	+	16775	94	EG=4.7	E=7.8e-05
26	chrM	198	48	+	16571	chrM	856	48	+	16775	48	EG=4.7	E=7.8e-05
25	chrM	3237	70	+	16571	chrM	3973	69	+	16775	38,1:0,31	EG=14	E=0.00023
24	chrM	2807	38	+	16571	chrM	3520	38	+	16775	38	EG=42	E=0.0007
24	chrM	3279	28	+	16571	chrM	10177	28	-	16775	28	EG=42	E=0.0007
23	chrM	15975	49	+	16571	chrM	16128	49	+	16775	49	EG=1.2e+02	E=0.0021
22	chrM	12976	102	+	16571	chrM	12073	105	+	16775	69,0:3,33	EG=3.7e+02	E=0.0063
22	chrM	14065	78	+	16571	chrM	14801	78	+	16775	78	EG=3.7e+02	E=0.0063
20	chrM	15293	44	+	16571	chrM	7673	44	+	16775	44	EG=3.3e+03	E=0.056
20	chrM	3316	68	+	16571	chrM	7217	68	+	16775	68	EG=3.3e+03	E=0.056
19	chrM	14091	55	+	16571	chrM	11832	55	+	16775	55	EG=1e+04	E=0.17
19	chrM	14757	47	+	16571	chrM	14646	47	+	16775	47	EG=1e+04	E=0.17
19	chrM	15279	67	+	16571	chrM	11771	67	+	16775	67	EG=1e+04	E=0.17
19	chrM	9322	33	+	16571	chrM	9810	33	+	16775	33	EG=1e+04	E=0.17
18	chrM	10840	40	+	16571	chrM	14173	40	+	16775	40	EG=3e+04	E=0.5
18	chrM	10947	40	+	16571	chrM	13143	40	+	16775	40	EG=3e+04	E=0.5
18	chrM	11594	60	+	16571	chrM	13952	60	+	16775	60	EG=3e+04	E=0.5
18	chrM	11718	30	+	16571	chrM	10920	30	+	16775	30	EG=3e+04	E=0.5
18	chrM	12087	38	+	16571	chrM	9483	38	+	16775	38	EG=3e+04	E=0.5
18	chrM	15450	50	+	16571	chrM	9450	50	+	16775	50	EG=3e+04	E=0.5
18	chrM	545	30	+	16571	chrM	6185	30	+	16775	30	EG=3e+04	E=0.5
17	chrM	12543	31	+	16571	chrM	8689	31	+	16775	31	EG=9e+04	E=1.5
17	chrM	13233	71	+	16571	chrM	5767	71	+	16775	71	EG=9e+04	E=1.5
17	chrM	15620	29	+	16571	chrM	11956	29	+	16775	29	EG=9e+04	E=1.5
17	chrM	15629	37	+	16571	chrM	13202	37	+	16775	37	EG=9e+04	E=1.5
17	chrM	2171	23	+	16571	chrM	2890	23	+	16775	23	EG=9e+04	E=1.5
17	chrM	2287	35	+	16571	chrM	2996	35	+	16775	35	EG=9e+04	E=1.5
17	chrM	4152	43	+	16571	chrM	2363	43	+	16775	43	EG=9e+04	E=1.5
17	chrM	4301	27	+	16571	chrM	12901	27	+	16775	27	EG=9e+04	E=1.5
17	chrM	464	43	+	16571	chrM	5614	43	+	16775	43	EG=9e+04	E=1.5
17	chrM	5354	37	+	16571	chrM	5635	37	+	16775	37	EG=9e+04	E=1.5
17	chrM	5842	33	+	16571	chrM	3861	33	-	16775	33	EG=9e+04	E=1.5
17	chrM	7784	43	+	16571	chrM	11497	43	+	16775	43	EG=9e+04	E=1.5
17	chrM	8549	35	+	16571	chrM	473	35	+	16775	35	EG=9e+04	E=1.5
17	chrM	9346	21	+	16571	chrM	4764	21	+	16775	21	EG=9e+04	E=1.5
16	chrM	10412	44	+	16571	chrM	10713	44	+	16775	44	EG=2.7e+05	E=4.5
16	chrM	11201	48	+	16571	chrM	12709	48	+	16775	48	EG=2.7e+05	E=4.5
16	chrM	11715	28	+	16571	chrM	12489	28	+	16775	28	EG=2.7e+05	E=4.5
16	chrM	13128	26	+	16571	chrM	1473	26	-	16775	26	EG=2.7e+05	E=4.5
16	chrM	13647	60	+	16571	chrM	9068	60	+	16775	60	EG=2.7e+05	E=4.5
16	chrM	14115	28	+	16571	chrM	9646	28	+	16775	28	EG=2.7e+05	E=4.5
16	chrM	14155	42	+	16571	chrM	16201	42	+	16775	42	EG=2.7e+05	E=4.5
16	chrM	14327	24	+	16571	chrM	16607	24	+	16775	24	EG=2.7e+05	E=4.5
16	chrM	14980	22	+	16571	chrM	11973	22	+	16775	22	EG=2.7e+05	E=4.5
16	chrM	15450	32	+	16571	chrM	13086	32	+	16775	32	EG=2.7e+05	E=4.5
16	chrM	15624	58	+	16571	chrM	12812	58	+	16775	58	EG=2.7e+05	E=4.5
16	chrM	1668	36	+	16571	chrM	1653	36	+	16775	36	EG=2.7e+05	E=4.5
16	chrM	3683	22	+	16571	chrM	8403	22	+	16775	22	EG=2.7e+05	E=4.5
16	chrM	4760	42	+	16571	chrM	9538	42	+	16775	42	EG=2.7e+05	E=4.5
16	chrM	5296	26	+	16571	chrM	15247	26	+	16775	26	EG=2.7e+05	E=4.5
16	chrM	5427	26	+	16571	chrM	16421	26	+	16775	26	EG=2.7e+05	E=4.5
16	chrM	5443	20	+	16571	chrM	15250	20	+	16775	20	EG=2.7e+05	E=4.5
16	chrM	6457	46	+	16571	chrM	8517	46	+	16775	46	EG=2.7e+05	E=4.5
16	chrM	7692	44	+	16571	chrM	4788	44	+	16775	44	EG=2.7e+05	E=4.5
16	chrM	8312	24	+	16571	chrM	9034	24	+	16775	24	EG=2.7e+05	E=4.5
16	chrM	8362	42	+	16571	chrM	9080	42	+	16775	42	EG=2.7e+05	E=4.5
16	chrM	8434	44	+	16571	chrM	16482	44	+	16775	44	EG=2.7e+05	E=4.5
16	chrM	8462	46	+	16571	chrM	2154	46	+	16775	46	EG=2.7e+05	E=4.5
16	chrM	8572	34	+	16571	chrM	6725	34	+	16775	34	EG=2.7e+05	E=4.5
16	chrM	9094	38	+	16571	chrM	13088	38	+	16775	38	EG=2.7e+05	E=4.5
16	chrM	9119	42	+	16571	chrM	5697	42	+	16775	42	EG=2.7e+05	E=4.5
15	chrM	10086	29	+	16571	chrM	14405	29	+	16775	29	EG=8e+05	E=13
15	chrM	10604	17	+	16571	chrM	12789	17	+	16775	17	EG=8e+05	E=13
15	chrM	11138	25	+	16571	chrM	5342	25	+	16775	25	EG=8e+05	E=13
15	chrM	11344	71	+	16571	chrM	5521	71	+	16775	71	EG=8e+05	E=13
15	chrM	11486	41	+	16571	chrM	5639	41	+	16775	41	EG=8e+05	E=13
15	chrM	11497	43	+	16571	chrM	16399	43	+	16775	43	EG=8e+05	E=13
15	chrM	11804	35	+	16571	chrM	11166	35	+	16775	35	EG=8e+05	E=13
15	chrM	12025	19	+	16571	chrM	7144	19	+	16775	19	EG=8e+05	E=13
15	chrM	12322	69	+	16571	chrM	14423	69	+	16775	69	EG=8e+05	E=13
15	chrM	12408	29	+	16571	chrM	2374	29	+	16775	29	EG=8e+05	E=13
15	chrM	12485	29	+	16571	chrM	5874	29	+	16775	29	EG=8e+05	E=13
15	chrM	12741	45	+	16571	chrM	9823	45	+	16775	45	EG=8e+05	E=13
15	chrM	12964	33	+	16571	chrM	5645	33	+	16775	33	EG=8e+05	E=13
15	chrM	13064	23	+	16571	chrM	10214	23	+	16775	23	EG=8e+05	E=13
15	chrM	13105	25	+	16571	chrM	15792	25	+	16775	25	EG=8e+05	E=13
15	chrM	13839	27	+	16571	chrM	9513	27	+	16775	27	EG=8e+05	E=13
15	chrM	14047	19	+	16571	chrM	11770	19	+	16775	19	EG=8e+05	E=13
15	chrM	14112	29	+	16571	chrM	15587	29	+	16775	29	EG=8e+05	E=13
15	chrM	14117	19	+	16571	chrM	9819	19	+	16775	19	EG=8e+05	E=13
15	chrM	14211	21	+	16571	chrM	5231	21	+	16775	21	EG=8e+05	E=13
15	chrM	14860	37	+	16571	chrM	13198	37	+	16775	37	EG=8e+05	E=13
15	chrM	15298	39	+	16571	chrM	4273	39	+	16775	39	EG=8e+05	E=13
15	chrM	15627	21	+	16571	chrM	11301	21	+	16775	21	EG=8e+05	E=13
15	chrM	15627	25	+	16571	chrM	5970	25	+	16775	25	EG=8e+05	E=13
15	chrM	16148	31	+	16571	chrM	4131	31	+	16775	31	EG=8e+05	E=13
15	chrM	16260	37	+	16571	chrM	15631	37	+	16775	37	EG=8e+05	E=13
15	chrM	1818	25	+	16571	chrM	12429	25	+	16775	25	EG=8e+05	E=13
15	chrM	2481	31	+	16571	chrM	2388	31	+	16775	31	EG=8e+05	E=13
15	chrM	3359	29	+	16571	chrM	14685	29	+	16775	29	EG=8e+05	E=13
15	chrM	3785	35	+	16571	chrM	15982	35	+	16775	35	EG=8e+05	E=13
15	chrM	4176	23	+	16571	chrM	15836	23	+	16775	23	EG=8e+05	E=13
15	chrM	4230	17	+	16571	chrM	5293	17	+	16775	17	EG=8e+05	E=13
15	chrM	473	27	+	16571	chrM	5926	27	+	16775	27	EG=8e+05	E=13
15	chrM	4761	23	+	16571	chrM	9904	23	-	16775	23	EG=8e+05	E=13
15	chrM	4870	37	+	16571	chrM	11633	37	+	16775	37	EG=8e+05	E=13
15	chrM	4920	21	+	16571	chrM	15243	21	+	16775	21	EG=8e+05	E=13
15	chrM	4922	33	+	16571	chrM	8985	33	+	16775	33	EG=8e+05	E=13
15	chrM	5187	53	+	16571	chrM	13097	53	+	16775	53	EG=8e+05	E=13
15	chrM	5296	43	+	16571	chrM	13674	43	+	16775	43	EG=8e+05	E=13
15	chrM	5306	25	+	16571	chrM	5344	25	+	16775	25	EG=8e+05	E=13
15	chrM	5326	29	+	16571	chrM	14622	29	+	16775	29	EG=8e+05	E=13
15	chrM	5369	25	+	16571	chrM	14296	25	+	16775	25	EG=8e+05	E=13
15	chrM	5836	17	+	16571	chrM	13783	17	+	16775	17	EG=8e+05	E=13
15	chrM	6415	29	+	16571	chrM	16654	29	+	16775	29	EG=8e+05	E=13
15	chrM	6447	43	+	16571	chrM	9290	43	+	16775	43	EG=8e+05	E=13
15	chrM	6467	47	+	16571	chrM	4360	47	+	16775	47	EG=8e+05	E=13
15	chrM	6518	37	+	16571	chrM	3056	37	+	16775	37	EG=8e+05	E=13
15	chrM	7303	29	+	16571	chrM	10169	29	+	16775	29	EG=8e+05	E=13
15	chrM	7383	29	+	16571	chrM	4317	29	+	16775	29	EG=8e+05	E=13
15	chrM	8362	21	+	16571	chrM	10302	21	+	16775	21	EG=8e+05	E=13
15	chrM	8406	41	+	16571	chrM	5604	41	+	16775	41	EG=8e+05	E=13
15	chrM	8413	103	+	16571	chrM	6097	103	+	16775	103	EG=8e+05	E=13
15	chrM	8418	53	+	16571	chrM	15469	53	+	16775	53	EG=8e+05	E=13
15	chrM	8436	21	+	16571	chrM	14920	21	+	16775	21	EG=8e+05	E=13
15	chrM	8564	33	+	16571	chrM	9971	33	+	16775	33	EG=8e+05	E=13
15	chrM	8569	27	+	16571	chrM	15768	27	+	16775	27	EG=8e+05	E=13
15	chrM	8720	15	+	16571	chrM	8597	15	+	16775	15	EG=8e+05	E=13
15	chrM	8953	35	+	16571	chrM	14396	35	+	16775	35	EG=8e+05	E=13
15	chrM	9337	33	+	16571	chrM	11283	33	+	16775	33	EG=8e+05	E=13
15	chrM	9848	43	+	16571	chrM	4315	43	+	16775	43	EG=8e+05	E=13
18	chrM	15816	34	+	16571	chr32	172	34	+	1028	34	EG=3e+04	E=0.03
16	chrM	10338	22	+	16571	chr32	177	22	+	1028	22	EG=2.7e+05	E=0.27
15	chrM	13147	33	+	16571	chr32	78	33	+	1028	33	EG=8e+05	E=0.8
15	chrM	1676	23	+	16571	chr32	71	23	+	1028	23	EG=8e+05	E=0.8
15	chrM	6590	19	+	16571	chr32	2	19	+	1028	19	EG=8e+05	E=0.8
# Query sequences=2 normal letters=17803

TEST lastal -r1 -D1000 -fTAB -K0 /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=15 d=13 x=14 y=9 z=14 D=1000 E=2.43016e+10
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 K=0 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
847	chrM	5902	1595	+	16571	chrM	6645	1589	+	16775	450,3:0,1085,3:0,54	EG=0	E=0
524	chrM	14756	1124	+	16571	chrM	14904	1124	+	16775	1124	EG=3.9e-237	E=6.2e-242
426	chrM	10944	1266	+	16571	chrM	11669	1266	+	16775	1266	EG=1.8e-190	E=2.8e-195
404	chrM	9109	918	+	16571	chrM	9824	918	+	16775	918	EG=5.3e-180	E=8.4e-185
366	chrM	3334	920	+	16571	chrM	4097	920	+	16775	920	EG=6.5e-162	E=1e-166
259	chrM	7524	722	+	16571	chrM	8266	721	+	16775	45,0:1,17,0:1,154,3:0,503	EG=5.6e-111	E=9.1e-116
249	chrM	13168	681	+	16571	chrM	13901	681	+	16775	681	EG=3.2e-106	E=5.3e-111
242	chrM	12461	671	+	16571	chrM	13197	668	+	16775	505,3:0,163	EG=7e-103	E=1.1e-107
193	chrM	4321	800	+	16571	chrM	5093	798	+	16775	66,3:0,69,0:1,662	EG=1.5e-79	E=2.4e-84
160	chrM	2908	255	+	16571	chrM	3629	255	+	16775	146,0:1,53,1:0,55	EG=7.6e-64	E=1.2e-68
149	chrM	1042	401	+	16571	chrM	1702	407	+	16775	114,0:2,92,0:4,33,0:1,27,0:1,45,1:0,32,1:0,56	EG=1.3e-58	E=2.1e-63
122	chrM	2409	334	+	16571	chrM	3112	338	+	16775	41,2:0,38,0:1,32,0:2,37,0:3,184	EG=9.3e-46	E=1.5e-50
114	chrM	5208	523	+	16571	chrM	5978	529	+	16775	233,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80	EG=6e-42	E=9.9e-47
108	chrM	595	352	+	16571	chrM	1243	356	+	16775	56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,18	EG=4.3e-39	E=7.1e-44
95	chrM	1742	281	+	16571	chrM	2432	295	+	16775	26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83	EG=6.6e-33	E=1.1e-37
92	chrM	10106	346	+	16571	chrM	10825	349	+	16775	299,0:3,47	EG=1.8e-31	E=2.9e-36
90	chrM	10518	272	+	16571	chrM	11243	272	+	16775	272	EG=1.6e-30	E=2.6e-35
72	chrM	8638	216	+	16571	chrM	9353	216	+	16775	216	EG=5.9e-22	E=9.8e-27
67	chrM	8897	151	+	16571	chrM	9612	151	+	16775	151	EG=1.4e-19	E=2.4e-24
60	chrM	12211	128	+	16571	chrM	12944	128	+	16775	128	EG=3e-16	E=5.1e-21
48	chrM	14425	318	+	16571	chrM	16456	319	+	16775	247,0:2,54,1:0,16	EG=1.6e-10	E=2.6e-15
40	chrM	1546	60	+	16571	chrM	2216	60	+	16775	60	EG=1e-06	E=1.7e-11
36	chrM	5764	129	+	16571	chrM	6510	134	+	16775	78,0:2,33,0:3,18	EG=8.1e-05	E=1.4e-09
33	chrM	1450	53	+	16571	chrM	2122	53	+	16775	53	EG=0.0022	E=3.6e-08
26	chrM	198	48	+	16571	chrM	856	48	+	16775	48	EG=4.7	E=7.8e-05
25	chrM	3237	70	+	16571	chrM	3973	69	+	16775	38,1:0,31	EG=14	E=0.00023
24	chrM	2807	38	+	16571	chrM	3520	38	+	16775	38	EG=42	E=0.0007
24	chrM	3279	28	+	16571	chrM	10177	28	-	16775	28	EG=42	E=0.0007
23	chrM	15975	49	+	16571	chrM	16128	49	+	16775	49	EG=1.2e+02	E=0.0021
22	chrM	14065	78	+	16571	chrM	14801	78	+	16775	78	EG=3.7e+02	E=0.0063
19	chrM	14757	47	+	16571	chrM	14646	47	+	16775	47	EG=1e+04	E=0.17
18	chrM	10947	40	+	16571	chrM	13143	40	+	16775	40	EG=3e+04	E=0.5
17	chrM	2171	23	+	16571	chrM	2890	23	+	16775	23	EG=9e+04	E=1.5
17	chrM	2287	35	+	16571	chrM	2996	35	+	16775	35	EG=9e+04	E=1.5
17	chrM	4152	43	+	16571	chrM	2363	43	+	16775	43	EG=9e+04	E=1.5
17	chrM	5842	33	+	16571	chrM	3861	33	-	16775	33	EG=9e+04	E=1.5
17	chrM	8549	35	+	16571	chrM	473	35	+	16775	35	EG=9e+04	E=1.5
16	chrM	13128	26	+	16571	chrM	1473	26	-	16775	26	EG=2.7e+05	E=4.5
16	chrM	13647	60	+	16571	chrM	9068	60	+	16775	60	EG=2.7e+05	E=4.5
16	chrM	14155	42	+	16571	chrM	16201	42	+	16775	42	EG=2.7e+05	E=4.5
16	chrM	15450	32	+	16571	chrM	13086	32	+	16775	32	EG=2.7e+05	E=4.5
16	chrM	1668	36	+	16571	chrM	1653	36	+	16775	36	EG=2.7e+05	E=4.5
16	chrM	5427	26	+	16571	chrM	16421	26	+	16775	26	EG=2.7e+05	E=4.5
16	chrM	8312	24	+	16571	chrM	9034	24	+	16775	24	EG=2.7e+05	E=4.5
16	chrM	8362	42	+	16571	chrM	9080	42	+	16775	42	EG=2.7e+05	E=4.5
16	chrM	9094	38	+	16571	chrM	13088	38	+	16775	38	EG=2.7e+05	E=4.5
15	chrM	473	27	+	16571	chrM	5926	27	+	16775	27	EG=8e+05	E=13
15	chrM	4761	23	+	16571	chrM	9904	23	-	16775	23	EG=8e+05	E=13
15	chrM	6447	43	+	16571	chrM	9290	43	+	16775	43	EG=8e+05	E=13
15	chrM	6518	37	+	16571	chrM	3056	37	+	16775	37	EG=8e+05	E=13
18	chrM	15816	34	+	16571	chr32	172	34	+	1028	34	EG=3e+04	E=0.03
15	chrM	13147	33	+	16571	chr32	78	33	+	1028	33	EG=8e+05	E=0.8
15	chrM	1676	23	+	16571	chr32	71	23	+	1028	23	EG=8e+05	E=0.8
15	chrM	6590	19	+	16571	chr32	2	19	+	1028	19	EG=8e+05	E=0.8
# Query sequences=2 normal letters=17803

TEST lastal -r1 -H1 -fTAB /tmp/last-test galGal3-M-32.fa
#
# a=7 b=1 A=7 B=1 e=18 d=13 x=17 y=9 z=17 H=1 E=9.07092e+08
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
867	chrM	5764	1733	+	16571	chrM	6510	1724	+	16775	78,0:2,35,0:3,17,8:0,450,3:0,1085,3:0,54	EG=0	E=0
524	chrM	14756	1124	+	16571	chrM	14904	1124	+	16775	1124	EG=3.9e-237	E=6.6e-242
470	chrM	10944	1395	+	16571	chrM	11669	1403	+	16775	1266,0:8,129	EG=2e-211	E=3.4e-216
404	chrM	9109	918	+	16571	chrM	9824	918	+	16775	918	EG=5.3e-180	E=8.9e-185
366	chrM	3334	920	+	16571	chrM	4097	920	+	16775	920	EG=6.5e-162	E=1.1e-166
259	chrM	7524	722	+	16571	chrM	8266	721	+	16775	45,0:1,17,0:1,154,3:0,503	EG=5.6e-111	E=9.7e-116
249	chrM	13168	681	+	16571	chrM	13901	681	+	16775	681	EG=3.2e-106	E=5.6e-111
242	chrM	12461	671	+	16571	chrM	13197	668	+	16775	505,3:0,163	EG=7e-103	E=1.2e-107
193	chrM	4321	800	+	16571	chrM	5093	798	+	16775	66,3:0,69,0:1,662	EG=1.5e-79	E=2.6e-84
166	chrM	1042	461	+	16571	chrM	1702	473	+	16775	114,0:2,92,0:4,33,0:1,27,0:1,45,1:0,32,1:0,61,0:6,55	EG=1.1e-66	E=1.8e-71
160	chrM	2908	255	+	16571	chrM	3629	255	+	16775	146,0:1,53,1:0,55	EG=7.6e-64	E=1.3e-68
124	chrM	8638	410	+	16571	chrM	9353	410	+	16775	410	EG=1e-46	E=1.8e-51
122	chrM	2409	334	+	16571	chrM	3112	338	+	16775	41,2:0,38,0:1,32,0:2,37,0:3,184	EG=9.3e-46	E=1.6e-50
114	chrM	5208	523	+	16571	chrM	5978	529	+	16775	233,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80	EG=6e-42	E=1e-46
108	chrM	595	352	+	16571	chrM	1243	356	+	16775	56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,18	EG=4.3e-39	E=7.5e-44
95	chrM	1742	281	+	16571	chrM	2432	295	+	16775	26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83	EG=6.6e-33	E=1.2e-37
92	chrM	10106	346	+	16571	chrM	10825	349	+	16775	299,0:3,47	EG=1.8e-31	E=3.1e-36
90	chrM	10518	272	+	16571	chrM	11243	272	+	16775	272	EG=1.6e-30	E=2.8e-35
48	chrM	14425	318	+	16571	chrM	16456	319	+	16775	247,0:2,54,1:0,16	EG=1.6e-10	E=2.8e-15
40	chrM	1546	60	+	16571	chrM	2216	60	+	16775	60	EG=1e-06	E=1.8e-11
26	chrM	198	48	+	16571	chrM	856	48	+	16775	48	EG=4.7	E=8.3e-05
26	chrM	12989	94	+	16571	chrM	5538	94	+	16775	94	EG=4.7	E=8.3e-05
25	chrM	3237	70	+	16571	chrM	3973	69	+	16775	38,1:0,31	EG=14	E=0.00025
24	chrM	2807	38	+	16571	chrM	3520	38	+	16775	38	EG=42	E=0.00074
23	chrM	15975	49	+	16571	chrM	16128	49	+	16775	49	EG=1.2e+02	E=0.0022
22	chrM	12976	102	+	16571	chrM	12073	105	+	16775	69,0:3,33	EG=3.7e+02	E=0.0066
22	chrM	14065	78	+	16571	chrM	14801	78	+	16775	78	EG=3.7e+02	E=0.0066
20	chrM	3316	68	+	16571	chrM	7217	68	+	16775	68	EG=3.3e+03	E=0.059
20	chrM	15293	44	+	16571	chrM	7673	44	+	16775	44	EG=3.3e+03	E=0.059
19	chrM	9322	33	+	16571	chrM	9810	33	+	16775	33	EG=1e+04	E=0.18
19	chrM	14091	55	+	16571	chrM	11832	55	+	16775	55	EG=1e+04	E=0.18
19	chrM	14757	47	+	16571	chrM	14646	47	+	16775	47	EG=1e+04	E=0.18
19	chrM	15279	67	+	16571	chrM	11771	67	+	16775	67	EG=1e+04	E=0.18
18	chrM	545	30	+	16571	chrM	6185	30	+	16775	30	EG=3e+04	E=0.53
18	chrM	10840	40	+	16571	chrM	14173	40	+	16775	40	EG=3e+04	E=0.53
18	chrM	10947	40	+	16571	chrM	13143	40	+	16775	40	EG=3e+04	E=0.53
18	chrM	11594	60	+	16571	chrM	13952	60	+	16775	60	EG=3e+04	E=0.53
18	chrM	11718	30	+	16571	chrM	10920	30	+	16775	30	EG=3e+04	E=0.53
18	chrM	12087	38	+	16571	chrM	9483	38	+	16775	38	EG=3e+04	E=0.53
18	chrM	15450	50	+	16571	chrM	9450	50	+	16775	50	EG=3e+04	E=0.53
24	chrM	3279	28	+	16571	chrM	10177	28	-	16775	28	EG=42	E=0.00074
18	chrM	15816	34	+	16571	chr32	172	34	+	1028	34	EG=3e+04	E=0.53
# Query sequences=2 normal letters=17803

TEST lastal -Q1 --split /tmp/last-test bs100.fastq
#
# a=21 b=9 A=21 B=9 e=102 d=67 x=101 y=44 z=101 D=1e+06 E=2.97648e+07
# R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.37109 j=3 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=33142
# lambda=0.22862 K=0.399124
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   6 -18 -18   1   3 -18 -18   0   1   3
# C -18   6 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# G -18 -18   6 -18 -18   6   1 -18   3 -18   1   0 -18   3
# T -18 -18 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# M   3   3 -18   0   3 -18  -2   1   0   0  -2   0   1   0
# S -18   3   3   0 -18   3   1  -2   0   0   1   0  -2   0
# K -18 -18   3   0 -18   3   1  -2   0   0   1   0  -2   0
# W   3 -18 -18   0   3 -18  -2   1   0   0  -2   0   1   0
# R   3 -18   3 -18   3   3  -2  -2   3 -18  -2   0  -2   3
# Y -18   3 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# B -18   1   1   1 -18   1   1  -1  -2   1   1   0  -1  -2
# D   1 -18   1  -2   1   1  -1  -1   1  -2  -1   0  -1   1
# H   1   1 -18   1   1 -18  -1   1  -2   1  -1   0   1  -2
# V   1   1   1  -2   1   1  -1  -1   1  -2  -1   0  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# m=1 s=102
#
a score=441 mismap=1e-10
s chrM 2571 87 - 16571 GGTCTAGGAGGAGTAGGGGCAGGTTTTGGCTCGTAAGAAGGCCTAGATAGGGGATTGTGCGGTGTGTGATGCTAGGGTAGAATCCGA
s 0       0 87 +    87 GGTTTAGGAGGAGTAGGGGTAGGTTTTGGCTCGTAAGAAGGTTTAGATAGGGGATTGTGCGGTGTGTGATGTTAGGGTAGAATTCGA
q 0                    B?ACCACCBCCCCCCACCACCBBCC@CABBCBCCCCBBBCBACBCBBBCCCCBBBCCB@BB?CBBB?CABC8CCCBC@@CC3<=A@C

a score=429 mismap=1e-10
s chrM 1543 87 + 16571 TTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAaagtgcacTTGGACGAACCAGAGTGTAGCTTAACACAAAGCACCC
s 1       0 87 +    87 TTATATAGAGGAGATAAGTCGTAATATGGTAAGTGTATTGGAAAGTGTATTTGGATGAACTAGAGTGTAGTTTAATATAAAGCATTT
q 1                    BB@1;?@B@BBBC@BBBCACBBA>B??=?A@B?B?B=7@4BB;B>@@@A?>=B@A@>@7>BA>BA6BA?@@B@@?B?AABBAB=<>B

a score=370 mismap=1e-10
s chrM 12300 84 + 16571 GGCCccaaaaatttTGGTGCAACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAAT
s 2        3 84 +    87 GGTTTTAAAAATTTTGGTGTAATTTTAAATAAAAGTAATAATTATGTATATTATTATAATTATTCTAACTTTGATTTTTTTAAT
q 2                     B@B>BB?B;=B@@=BBABA@<A5??'8@@>=3@47>@+AA9?;@@>@9?@(A>-9@A=(=>?1;=7=96@.4<(49=.2.1(==

a score=258 mismap=1e-10
s chrM 4049 69 - 16571 ATAACTTCTTGGTCTAGGCACATGAATATTGTTGTGGGGAAGAGACTGATAATAAAGGTGGATGCGACA
s 3       0 69 +    87 ATCATTTTTTGGTTTGGGTATATGAATATTGTTGGGGGGAAGAGATTGATAGTAATGGTGGATGCAATT
q 3                    B>)(?'=@?<AABB()669@@>4BB8;*7+)=BC)383):4*;AA>11<@+%+?9)4AB>5,3;7%25#

a score=432 mismap=1e-10
s chrM 5737 87 + 16571 CGCCGCCGGGAAAAAAGGCGGGAGAAGCCCCGGCAGGTTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATGAAAATCACCTCGGA
s 4       0 87 +    87 CGTCGTCGGGAAAAAAGGCGGGAGAAGTTTCGGTAGGTTTGAAGCTGTTTTTTCGAATTTGTAATTTAATATGAAAATTATTTCGGA
q 4                    ?BCC@?CCBCC@CBCACCCCCCCC@ABCCAABBCCBC@A=B@CBCACCC@BCB@?CCACBCBBBBB>C>@>BBB?BBB:=<B@B>BB

a score=283 mismap=1e-10
s chrM 10398 67 - 16571 GGGGCACCGATTATTAGGGGAACTAGTCAGTTGCCAAAGCCTCCGATTATGATGGGTATTACTATGA
s 5        0 67 +    87 GGGGTATCGATTATTAGGGGAATTTGTTAGTTGTTAAAGTTTTCGATTATGATGGGTATTATTATAA
q 5                     BC?CCCBAABABBC>@>=BB5C>BB?B3B;BB<CB4A.B/@86B?/7>5?@@>@?>6::B</<8A##

a score=380 mismap=1e-10
s chrM 11106 87 + 16571 TCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACG
s 6        0 87 +    87 TTATATTTTATATTTTTTTCGAAATTATATTTATTTTTATTTTGGTTATTATTATTCGATGAGGTAATTAGTTAGAATGTCTGAACG
q 6                     BBB?C<@BA;5AB:AB@B?B<AB>A<AB:@AB9;=@AA43A>@;,5=@@A@/@>@=:?:@>><>-=6@746?=05?*?<<==9775=

a score=346 mismap=1e-10
s chrM 16343 85 - 16571 CTACAAGCATTAAttaattaACACACTTTAGTAGGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGAATGAGG
s 7        0 85 +    87 TTATAAGTATTAATTAATTAATATATTTTAGTAGGTATGTTTGCTTGTAATATTGAATGTAGGAGCGATAGATAAGAGAATTAGG
q 7                     BCC@>CCBCBBCBCBB;B?6,:>@?BB<?:+4>89ABBB@AB?):B=5=1@@49;;9;<9(22+/+>?060.=<4++276;####

a score=377 mismap=1e-10
s chrM 5006 87 + 16571 AGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTA
s 8       0 87 +    87 AGTATATTCTTTAATTATTTATATAGGATGAATAATAGTAGTTTTATCGTATAATTTTAATATATCTATTTTTAATTTAATTATTTA
q 8                    B@C=BBCCBC?CCCC>BCC<B;@B@@BA2>C:<ABCC<A@A=@BB-@B?:B<B7>?AB:A@@@>(:AB@=B;B@BB>@<@>@A@ABB

a score=387 mismap=1e-10
s chrM 7901 87 + 16571 TGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGA
s 9       0 87 +    87 TGAATTTACGAGTATATCGATTACGGTGGATTAATTTTTAATTTTTATATATTTTTTTTATTATTTTTAGAATTAGGTGATTTGCGA
q 9                    B=9=B+BBBB>BBB=:BB@;<@@B:<A4@?A:?=BABAAAA>>@<A>@AA>@@@?@@6878:6588?<:>=?9<::=<51<99>;48

a score=211 mismap=1e-10
s chrM 3290 63 + 16571 TTCCTCTTCTTAACAACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCG
s 10      0 63 +    87 TTTTTTTTTTTAATCATATATTTATGGTTAATTTTTTATTTTTTATTGTATTTATTCTAATCG
q 10                   @6)>B+A9<)?>>A(?A=-(48/<5?=1>4>:B@@<-:@@5;/9==ABA47*5':B<######

a score=403 mismap=1e-10
s chrM 487 87 - 16571 GGTTGTTGATGGGTGAGTCAATACTTGGGTGGTACCCAAATCTGCTTCCCCATGAAAGAACAGAGAATAGTTTAAATTAGAATCTTA
s 11     0 87 +    87 GGTTGTTGATGGGTGAGTTAATATTTGGGTGGTATTTAAATTTGTTTTTTTATGAAAGAATAGAGAATAGTTTAAATTAGAATTTTA
q 11                  9<CCCA>BBC@4ABC:?CCC=ACCCABABC@BCCC9?=>A<7BC==;6AB@8BA<4?B?'?8<B@6/3B924>BA9(?B=6.?A@>3

a score=369 mismap=1e-10
s chrM 3253 87 + 16571 TCGCATAAAACTTAaaactTTACAGTCAGAGGTTCAATTCCTCTTCTTAACAACATACCCATGGCCAACCTCCTACTCCTCATTGTA
s 12      0 87 +    87 TCGTATAAAATTTAAAATTTTATAGTTAGAGGTTTAATTTTTTTTTTTAATAATATATTTATGGTTAATTTTTTATTTTTTATTGTA
q 12                   <BCCCCCCCCCC=CCCCCCCCCCC?BCCCCC??>CBCCCCCCCCBCCCCBCCCCCCC@@ACACCBC@CBCBC@?@A9CCCBCABCCB

a score=381 mismap=1e-10
s chrM 15116 87 - 16571 TAAGCACTCTACTCTCAGTTTACTGCTAAATCCACCTTCGACCCTTAAGTTTCATAAGGGCTATCGTAGTTTTCTGGGGTAGAAAAT
s 13       0 87 +    87 TAAGTATTTTATTTTTAGTTTATTGTTAAATTTATTTTCGATTTTTAAGTTTTATAAGGGTTATCGTAGTTTTTTGGGGTAGAAAAT
q 13                    B@BBAB?ACBA@@BAA>ABAB:>AA@9?@AA9=@BB;@>@A8><2?99A@;B@?@B889@?5:@?76:?=6588=568:999;8666

a score=379 mismap=1e-10
s chrM 9704 86 - 16571 AAATACTTTGACGCCGGTGGGGATAGCGATGATTATGGTAGCGGAGGTGAAATATGCTCGTGTGTCTACGTCTATTCCTACTGTAA
s 14      0 86 +    87 AAATATTTTGACGTCGGTGTGGATAGTGATGATTATGGTAGCGGAGGTGAAATATGTTTGTGTGTTTACGTTTATTTTTATTGTAT
q 14                   8CCACCC<BBA5=CCCCCB><ACBC@C+BCBBBCC<@B9BBBC@CB=@BBB@BAABBB@A@AB=:BB?@@A16@?@);B:@<9?A#

a score=358 mismap=1e-10
s chrM 12881 86 + 16571 TCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCTTCTAAACGCTAATCCAAGCCTC
s 15       1 86 +    87 TTATTTTTGTCTTAGTATGATTTATTTTATATTTTAATTTATGAGATTTATAATAAATAGTTTTTTTAAATGTTAATTTAAGTTTC
q 15                    @1>(?@)@C>(>CCC>)@1:15=>9@=ACCC@>A?*=B?8,>4@BCBCCACCB>))@/ABA=1>5>BB*A+B<<.>B=-==ABB78

a score=384 mismap=1e-10
s chrM 16124 87 - 16571 GTTAGTTGGGGGGTGACTGTTAAAAGTGCATACCGCCTAAAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTT
s 16       0 87 +    87 GTTAGTTGGGGGGTGATTGTTAAAAGTGTATATCGTTAAAAGATAAAATTTGAAATTTGGTTAGGTTGGTGTTAGGGTTTTTTGTTT
q 16                    B??BBBB@B@BB@BBAA?BA:?@B<<?AA>??@@C@@>@:>?4:@>@9?@<:?@@>4<@?<::?><8;?4><>?969:::<673553

a score=321 mismap=1e-10
s chrM 10589 87 + 16571 GTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTG
s 18       0 87 +    87 GTTTATTATAGTTATTTTTATAATTTTCAATATTTATTTTTTTTTAGTCAATATTGGGTTTATTGTTATATCAGTTTTTTTCGTCTG
q 18                    (>CCCCCCBCC=ABCBB=ACCBC3*@B@C=9CBC,CA=-C@CB=CA>9?/+A+AB>)@*A@+;*=B@9CAB*?A@)B@C*C@8C=7>

a score=372 mismap=1e-10
s chrM 14174 87 + 16571 ACAATATATACACCAACAAACAATGTTCAACCAGTAACCACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGA
s 19       0 87 +    87 ACAATATATATTTTAATAAATAATGTTTAATTGGTAATTATTATTAATTAACGTTTATAATTATATAAAGTTTTTGTATTAATAGGA
q 19                    =@9@B>C<';>)*8?'>67@1;(?<;A<@:@@(9A@@)(38>9+@<8?6@4:=?B976/5<@>@@/@<?1:0'9178--9=:426>@

a score=341 mismap=1e-10
s chrM 5859 87 + 16571 TTACAGTCCAATGCTTCACTCAGCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGAC
s 20      0 87 +    87 TTATAGTTTAATGTTTTATTTAGTTATTTTATTTTATTTTTACTGATGTTCGTCGATCGTTGATTATTATTTATAGATTATAAAGAT
q 20                   )@,27@CBC:1?>C?-2AA?59'<)?B7A46)@>:*?8,5)<24?)5>?;?(2@@2(1>-:<3@B5,<,3>7)?2%81,;@@BAA?B

a score=387 mismap=1e-10
s chrM 80 87 + 16571 GATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATTCTATTATTTATCGCACC
s 21    0 87 +    87 GATAGTATTGCGAGACGTTGGAGTCGGAGTATTCTATGTCGTAGTATTTGTTTTTGATTTTTGTTTTATTTTATTATTTATCGTATT
q 21                 ?BBC@@BCAC:CC@C=BCCB5=CCC@BCBCCCBBCC@BBBCC@C@3BC@BCABBB+BC:@BB>B-C@B@7B2BBABBA:1:A8A?=9

a score=386 mismap=1e-10
s chrM 1407 82 - 16571 TGATATTTGGCCTCACGGGAGGACATAGCCTATGAAGGCTGTTGCTATAGTTGCAAGCAGGAGGATAATGCCGATGTTTCAG
s 22      0 82 +    87 TGATATTTGGTTTTATGGGAGGATATAGTTTATGAAGGTTGTTGTTATAGTTGTAAGTAGGAGGATAATGTCGATGTTTTAG
q 22                   BBCCBCBCCCCBCCCBBCB@C@BB@BB>;@B>BC?BB@B?AAB?BAA:B?BBC@BB?BBB?A5>76A=9B:(76B8.3+7<9

a score=386 mismap=1e-10
s chrM 13308 87 - 16571 tttTATGCGATTACCGGGCTCTGCCATCTTAACAAACCCTGTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATT
s 23       0 87 +    87 TTTTATGTGATTATCGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTGGGTATAATATTAAGTTGAGATGATATTATT
q 23                    BBBC@CBBBCCABCABBBBBBCBAB@<BB=?C<BCB:BC>@@AA@ACB?BA<9AB@@?C@BBBB:BB@BBB:@@761*B:ABABB@A

a score=378 mismap=1e-10
s chrM 10081 87 + 16571 TAATCAACACCCTCCTAGCCTTACtactaataattattaCATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTT
s 24       0 87 +    87 TAATTAATATTTTTTTAGTTTTATTATTAATAATTATTATATTTTGACTATTATAATTTAACGGTTATATAGAAAAATTTATTTCTT
q 24                    BACBCCCACCBCCCCCCCCCACBCCABABACBCCCCCCBBCCCBCBCCCBBCCABC==BBBCBC?CCCBACBCBBCBBABCBCBCB@

a score=337 mismap=1e-10
s chrM 1208 87 + 16571 TTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTAC
s 25      0 87 +    87 TTTTGTAATCGTTAAATTTTGATTAATCTTATTATTCTTTGTTTAGTTTAGATATCGTTATTTTTAGTAAATTTTGATGAAGGTTAT
q 25                   ,B=BBCCC@25)=CB9B7;BC7>?A4A;5@BA+;6)()1BCA748@)=1?(:.A,A)?2=*A:@8A7@<3'<1@.BA,9(9A@:(:B

a score=294 mismap=1e-10
s chrM 4660 75 + 16571 CAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAACCATAACCAATA
s 26      0 75 +    87 TAACAGTATTTATAATTTTCTTAATAGTTATTTTTTTTAATAATATATTTTGCGGATAATGAATTATAACTAATA
q 26                   A61@'(=CBBABA,AC664*>0?B@.9,BA<:=?>-B6.)*=>0?59;'3*'.<BA=?*>8<A??1)@<'/2=@=

a score=378 mismap=1e-10
s chrM 14124 87 + 16571 cctaaccctactcctaaTCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAA
s 27       0 87 +    87 TTTAATTTTATTTTTAATTATATAATTTATTTTTTCGAGTAATTTTAATTATAATATATATATTAATAAATAATGTTTAATTAGTAA
q 27                    BB?>B@B@BB@B?@?BBB?A>B>AAAA?>>A;A>A@A?AA?<?=<=?A:A>>=:=??AAA>@9@:@?>9??>@@@A<?A>A777A59

a score=405 mismap=1e-10
s chrM 918 87 + 16571 CAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCA
s 28     0 87 +    87 TAAGTTAATAGAAGTCGGCGTAAAGAGTGTTTTAGATTATTTTTTTTTTAATAAAGTTAAAATTTATTTGAGTTGTAAAAAATTTTA
q 28                  BCAC@CC?BBCCABBBB@BCCCBAAB?@>BB@BCBBBB:CBBBB@BBBBCB@C>C<AB@B@@BBABB95@BBA@?=@?=7AA:B=:@

a score=345 mismap=1e-10
s chrM 4775 81 + 16571 AGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCT
s 29      0 81 +    87 AGTAATAAAATTAGGAATAGTTTTTTTTTATTTTTGAGTTTTAGAGGTTATTTAAGGTATTTTTTTGATATTCGGTTTGTT
q 29                   ?6@C@5<(<CCB.CA?4BB=4?AA;=@CA=A<%=5>BB=15=B=>>6<B??):=>-<BA>(<@2;+%,?0805.'A7>(=;

a score=357 mismap=1e-10
s chrM 6055 86 + 16571 ACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGC
s 30      0 86 +    87 ATTATATTTATAACGTTATCGTTATAGTTTATGTATTTGTAATAATTTTTTTTATAGTAATATTTATTAGAATCGGAGGTTTTGGT
q 30                   BB@<BBCBBBB@ABBB>ABB@B>BBA3>-@>BBCABAB>B6:+4BB;B8C?@?B=@BB?A;@?A?B@@B@BB@>-@:@?:>@A81>

a score=385 mismap=1e-10
s chrM 2794 86 + 16571 CCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAacctccgagcagtaCATGCTAAGACTTCACCAGTCAAAGCG
s 31      0 86 +    87 TTTGTCTTAAAAATTTTGGTTGGGGCGATTTCGGAGTAGAATTTAATTTTCGAGTAGTATATGTTAAGATTTTATTAGTTAAAGTG
q 31                   BBBB@,AB>B=BB:@>AA8?B<>7@A@?A@A<@@BAA>?.9,9A?A<@?A9'91-45<@25;@:5A@>?9<9?>>A<>@<@?AA>7

a score=369 mismap=1e-10
s chrM 8060 87 + 16571 GTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACA
s 32      0 87 +    87 GTTTTGTATTTATGAGTTGTTTTTATATTAGGTTTAAAAATAGATGTAATTTTCGGACGTTTAAATTAAATTATTTGTATCGTTATA
q 32                   BCCB@BCBBCB?BCBABB@BBBBBBBBB?BC?BBBBC<BBB@C@@=CC<<>:BC@BB78?@A@B@ABB>@B?BB>:4=;:?;3<B44

a score=173 mismap=1.07e-08
s chrM 12857 72 + 16571 ACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACC
s 33       0 72 +    87 ATAATCGTATCGGCCATATCGGTTTTATTTTTGCTTTAGTTTGATCACCTCCATTCTCTAGTGTGTTTGACC
q 33                    ;AA+;<B9(62;?8(6?>:;-8@;)<AB8)((>B>AA5%?################################

a score=423 mismap=1e-10
s chrM 13224 87 - 16571 GAATGGGTACAATGAGGAGTAGGAGGTTGGCCATGGGTATGTTGTTAAGAAGAGGAATTGAACCTCTGACTGTAAAGTTTTAagttt
s 34       0 87 +    87 GAATGGGTATAATGAGGAGTAGGAGGTTGGTTATGGGTATGTTGTTAAGAAGAGGAATTGAATTTTTGATTGTAAAGTTTTAAGTTT
q 34                    BCABBBBCBBBCAACB;BCAB@BBBBBCABBA?AB>B@5@B@BA5BCB7?BABBA:B:++8BAB@BA:-<BABBA@2BBA@@A9><7

a score=363 mismap=1e-10
s chrM 4796 87 + 16571 CCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCC
s 35      0 87 +    87 TTTCTTTTATTTTTGAGTTTTAGAGGTTATTTAAGGTATTTTTTTGATATTCGGTTTGTTTTTTTTTATATGATAAAAATTAGTTTT
q 35                   ?BC?CAAB@B=CCCCBBB@B@>@@BBACB?@B@CB@CBACC>A4BBACAAB?B@C@@B:5B@@@A?.=A8B>A?A;8;?@?A:===6

a score=364 mismap=1e-10
s chrM 14459 87 + 16571 GCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATtaaaaaaactattaaacCCATATAACCTCCCCCAAAATTCAGA
s 36       0 87 +    87 GTTGTAGTATATTTAAAGATAATTATTATTTTTTTTAAATAAATTAAAAAAATTATTAAATTTATATAATTTTTTTTAAACTTTATA
q 36                    BB:@@BCB4BBCB?*@A>BB>99BCBBCC>53B<<(>)(<9(87:3B??CBCCBCBCBBCCBB->@1?+?@:@@B??177'71;A##

a score=375 mismap=1e-10
s chrM 10096 87 + 16571 TAGCCTTACtactaataattattaCATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCG
s 37       0 87 +    87 TAGTTTTATTATTAATAATTATTATATTTTGATCATTATAATTTAATGGTTATATAGAAAAATTTATTTTTTACGAGTGCGGTTTCG
q 37                    BBAA;6BBB6@BC=>B>C@C<BBB??@CBACBA+C=@AB?BB8@?@<66BA@B>BA@B:ABAB?2AA7A@@8A<3B+AB85B>=<<B

a score=206 mismap=1e-10
s chrM 12858 49 - 16571 CTGCTCGCAGTGCGCCGATCAGGGCGTAGTTTGAGTTTGATGCTCACCC
s 38       0 49 +    87 TTGTTCGTAGTGCGTCGATTAGGGCGTAGATTGAGTTTGATGGTTATTT
q 38                    <?)8)?@:>>*B7/C+C?9@(B?5@*B)7%5A5C7@A+49(2%/;03B?

a score=378 mismap=1e-10
s chrM 7893 87 + 16571 AATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCG
s 39      0 87 +    87 AATGGTATTGAATTTACGAGTATATCGATTACGGTGGATTAATTTTTAATTTTTATATATTTTTTTTATTATTTTTAGAATAAGGCG
q 39                   B?=BBBBB?B@BABBB=@BABBAAA@BBAA>;0===8>=;7.5:<;@@@A@<8A>351:@A2(;>@9-;73:7;<34.962+:=;.6

a score=363 mismap=1e-10
s chrM 5186 87 + 16571 ACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGA
s 40      0 87 +    87 ATTAATATTTTTAATTTTATTTATTTTTTTTTTTTTAGGAGGTTTGTTTTCGTTAATCGGTTTTTTGTCTAAATGGGTTATTATTGA
q 40                   BB?BBBBBBBBCBBABBAB?B@@B<9BAB>BA@BBB<@BA@ABAAAB=:@BB:BAAB=<>@?4<@B@A@?9=?@=.4?9:+778;32

a score=304 mismap=1e-10
s chrM 10193 87 + 16571 CCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACC
s 41       0 87 +    87 TTTCGTTCGTTTTTTTTTCTTTATAAAATTTTTTTTAGTAGTTATTATTTTTTTATTATTTGATATAGAAATTGATTTTCTTTTATT
q 41                    *);9:14@3>,B?05:B9BA@2=87@>3><(=?9-)3=;/=@:BB@B@0?;>:A09>@4;3>915@2>08;<7.'2;>>8A:+81;A

a score=406 mismap=1e-10
s chrM 5520 87 + 16571 AGGTTAAATACAGACCAAGAGCCTTCAAAGCCCTCAGTAAGTTGCAATACTTAATTTCTGCAACAGCTAAGGACTGCAAAACCCCAC
s 42      0 87 +    87 AGGTTAAATATAGATTAAGAGTTTTTAAAGCCTTTAGTAAGTTGTAATATTTAATTTTTGTAATAGTTAAGGATTGTAAAACTTTAT
q 42                   B88>BCBB4BABB=BB>;B=<?BB:?AB?@AB?@B>9A?A@A?A>@?@4?>>@?B<@@6B=@<B55:7(25A:?7>=>;@;@?5(9@

a score=224 mismap=1e-10
s chrM 2215 48 - 16571 AAAGAGTATGATGGGGtggtggttgtGGTAAACTTTAATAGTGTAGGA
s 43      0 48 +    87 AAAGAGTATGATGGGGTGGTGGTTGTGGTAAATTCTAATAGTGTAGGT
q 43                   BC@BCCCC=B=BBB@B@A@B?B@B9AAB>>BBBA):B<>??05:?7@#

a score=137 mismap=3.88e-05
s chrM 10035 39 - 16571 GTTAGTAGTATAGTGATGCCAGCAGCTAGGACTGGGAGA
s 44       0 39 +    87 GTTAGTAGTGTAGTGATGTTAGGAGTTAGGATTAGAGGA
q 44                    >*>C+3(>:'<CC?B@-7'':0%'@-B@40@>6######

a score=385 mismap=1e-10
s chrM 6782 79 - 16571 GCCGTAGATGCCGTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGGTAAAATAGAGACCCAGT
s 45      0 79 +    87 GTCGTAGATGTCGTTGGAAATGGTGAAGGGAGATTCGAAGTATTTTGAGGTTTGTAGGATGGTAAAATAGAGATTTAGT
q 45                   B@9?CBBABB@BBBBAC=BBABA??BB@@4?A@BA66BB@B8B7A@<BB0(?<=6%5>9)3;6>@4,;399?@</145:

a score=390 mismap=1e-10
s chrM 12475 87 + 16571 AGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAACAACCCAG
s 46       0 87 +    87 AGTTTTTTTTTTATAATAATATTTATGTGTTTAGATTAAGAAGTTATTATTTCGAATTGATATTGAGTTATAATTTAAATAATTCAG
q 46                    BC>>ACA?BBBB>B?>CCC@ABBB@BB@>?BABBABB;789@B??@@<C?BBBAA@A?@4A@A@B@<19@.4A=:B@=B<B7<@@@B

a score=365 mismap=1e-10
s chrM 6330 87 + 16571 GTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATA
s 47      0 87 +    87 GTAGATTTAATTATTTTTTTTTTATATTTAGTAGGTGTTTTTTTTATTTTAGGGGTTATTAATTTTATTATAATAATTATTAATATA
q 47                   AC>=ABBAA@CB6BCCB9?BAB=CCB@<B;C<CA@C@,9CCBAB>?=BBAB@A34@(86<CBBCB<<B=BA@@B=A92A?826;:B>

a score=372 mismap=1e-10
s chrM 6202 86 + 16571 TAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTC
s 48      0 86 +    87 TAAGTTTTTGACTTTTATTTTTTTTTTTTTTATTTTTGTTCGTATTTGTTATAGTGGAGGTTGGAGTAGGAATAGGTTGAATAGTT
q 48                   BCBBB@BBBB@BBB?BB>B?BBBAB@>A?B?<AAAB>B9BAB<@A@>ABA87AAAB?A@?BABBA@B:A@B=:@<8:<477<@??9

a score=369 mismap=1e-10
s chrM 12896 87 + 16571 CATGATTTATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCTTCTAAACGCTAATCCAAGCCTCACCCCACTACTAGGCC
s 49       0 87 +    87 TATGATTTATTTTATATTTTAATTTATGAGATTTATAATAAATAGTTTTTTTAAATGTTAATTTAAGTTTTATTTTATTATTAGGTT
q 49                    BCBCBBCCCBB?BBB6CBCCB@@@BAA@C?BB@B@B@?BBC?B@B@@BBB>BBA5@BB<>B=?@A4B>?>?BA==>?B?=@B:<=@B

a score=155 mismap=1.51e-06
s chrM 6025 36 + 16571 TGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACA
s 50      0 36 +    87 TGGGTTAGTTAGGTAATTTTTTAGGTAACGATGATA
q 50                   ?)3<2A>:>*?6<B8>@7BB@<@B@>B0*(26)8B<

a score=378 mismap=1e-10
s chrM 9664 87 + 16571 AAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACT
s 51      0 87 +    87 AAAATAATTGAAATTAAATAATTTAAGTATTGTTTATTATAATTTTATTGGGTTTTTATTTTATTTTTTTATAAGTTTTAGAGTATT
q 51                   BCCCCBCCCCBBBBACCBACBBA@C@CBCBBCCBAACBCACBC@CBBCABBBBBBCAA<BAC@;?@CB>BBABBBABABB@@BBBBA

a score=132 mismap=0.000242
s chrM 10545 43 + 16571 CTCATATCCTCCCTACTATGCCTAGAAGGAATAATACTATCGC
s 52       0 43 +    87 TTTATATTTTTTTTATAACGCTTAGAAGGAATCACCTTATCGT
q 52                    :-*<%<=>@;@='5'8())-=:>CB3:1%3:7%8%'?6>,235

a score=386 mismap=1e-10
s chrM 14458 87 + 16571 CGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATtaaaaaaactattaaacCCATATAACCTCCCCCAAAATTCAG
s 53       0 87 +    87 TGTTGTAGTATATTTAAAGATAATTATTATTTTTTTTAAATAAATTAAAAAAATTATTAAATTTATATAATTTTTTTTAAAATTTAG
q 53                    BBB?@ABBBBCBB*BBA@@B>@B<@??B<?BA@?AB8B<?B::@??6<A@?A<?@A@@@7:B8?@9@?<@<@B<=;A??@:=1?:.5

a score=388 mismap=1e-10
s chrM 10088 86 - 16571 GACTGCTGTGATTAGGACGGATCAGACGAAGAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGTGA
s 54       0 86 +    87 GATTGTTGTGATTAGGACGGAATAGACGAAGAGGGGTGTTTGGTATTGGGTTATGGTAGGGGTTTTTATATTGATAATTGTTGTGT
q 54                    =CCB@9CCCC<BCBB7ABC?<'*?C8A85A47?<B@7>;0+?BA,A48BCB(';@>=B68B?*CB>6A;*<>C?B40=2-6:@5@#

a score=399 mismap=1e-10
s chrM 36 87 + 16571 AGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCA
s 55    0 87 +    87 AGCTTTTTATGTATTTGGTATTTTCGTTTGGGGGGTGTGTACGCGATAGTATTGCGAGACGTTGGAGTCGGAGTAATCTATGTCGTA
q 55                 BBCBBBBC@C>B@B?@BBBBABAAB?A@B@BB>BBB?AACA@@BABBBBABA:A@@B>@AB@A:BAAA8B?@@A<43><?A?:>??A

a score=417 mismap=1e-10
s chrM 6915 87 - 16571 CTATGGTGAGCTCAGGTGATTGATACTCCTGATGCGAGTAATACGGATGTGTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTG
s 56      0 87 +    87 TTATGGTGAGTTTAGGTGATTGATATTTTTGATGCGAGTAATACGGATGTGTTTAGGAGTGGGATTTTTAGGGGATTTAGTGGGGTG
q 56                   BABABBBABAABB@@BB>AABA<@A@@?@>AAA?@B?@?@=>>@?@@AAA@;B>>?A@;?B?AA>?A?>@=:=?@<553@?>@;?<;

a score=313 mismap=1e-10
s chrM 11219 85 + 16571 CTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCA
s 57       0 85 +    87 TTAGTAGGTTTTTTTTTTTTATTTATTTTATTAATTTATATTTATAATATGTTAGGTTTATTAAATATTTTATTATTGATTTTTA
q 57                    BB=C>;>+>?B@B@@CB@A+5A?'=A;(8<BABB@=>@>@98BB@BA@;2'=47B>7:AB=;('>@?????@7<AA7'8<-8?=@

a score=409 mismap=1e-10
s chrM 3652 85 - 16571 GTTGGAGTGTAGGATAAATCATGCTAAGGCGAGGATGAAACCGATATCGCCGATACGGTTGTATAGGACTGCTTGAATGGCTGCT
s 58      0 85 +    87 GTTGGAGTGTAGGATAAATTATGTTAAGGCGAGGATGAAATCGATATCGTGGATACGGTTGTATAGGATTGTTTGAATGGTTGTT
q 58                   B>66?C>C?8+:B@BCABB=>BA5B>AAA9CB<A4?A@@ABAB@>@@;B:%+7?)2;35A*=>@>B?@>B<A+@--1;5A>@=<:

a score=356 mismap=1e-10
s chrM 6572 84 - 16571 AAAAGAGTAAGACCCTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGC
s 59      0 84 +    87 AAAAGAGTAAGATTTTTATTAATAGATGGAGATATATAGAAATAGCTAAATTATATTTATAGAATGTTAGTATTAGGCGTAGAC
q 59                   BCA=8@>:B>AB9B-B?A0*:BABB?B?=6><?<BA@5A99>024)?B>A@:>@@A9<:7)4=,3=6;+)@/>AA<@1?#####

a score=386 mismap=1e-10
s chrM 3870 87 - 16571 GTAGATATTTGAAGAACTGATTAATGTTTGGGTCTGAGTTTATATATCACAGTGAGAATTCTATGATGGACCATGTAACGAACAATG
s 60      0 87 +    87 GTAGAGATTTGAAGAATTGATTAATGTTTGGGTTTGAGTTTATATATTATAGTGAGAATTTTATGATGGATTATGTAACGAATAATG
q 60                   B>B>=)=(@3:87/;7;(;:B8((:+@<)@7<B@:27(<ABAABAAB@=5()-@,1)>7.2A?@9=@?60((5=15A=31<@:?>@#

a score=207 mismap=1.18e-10
s chrM 16062 72 + 16571 ATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTAC
s 63       0 72 +    87 ATTGATTTATTCTTTAATAATCGTTATGTATTTCGTATATTATTGTTAGTTGGTTAGAGTATTGTCCGGGAC
q 63                    3)>(<@))@A*<*>(0(94<:0)<+BA:>:7>B8'?%66-?>B5).A6@0=#####################

a score=348 mismap=1e-10
s chrM 13007 87 + 16571 CAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAG
s 64       0 87 +    87 TAGCTTAATTAGGTTTTTAGTTTTGATTTTTTTTAGTTATAGAAGGTTTTATTTTAGTTTTAGTTTTATTTTATTTAAGTATTATAG
q 64                    BCCCAC@CCACCCC=CCCC0CCCCCCACCCBCCCCCCC@CCBC>C@CBCCA<BBCBCACBCB@?B@BB?@@B@@,;BB?A?AB>BB=

a score=362 mismap=1e-10
s chrM 12002 86 + 16571 CAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGagaaaacACCCTCATGTTCATACACCTATCCCC
s 65       0 86 +    87 TAATGGGGTTTATTTATTTATTATATTAATAATATAAAATTTTTATTTATACGAGAAAATATTTTTATTTTTATATATTTATTTTT
q 65                    0AAA;B;B>;>:06<BBB>??A@?BBBB?BC/BB>=B:A+;2<@B@??B>BBC=B6';B=BABBABA+'.>4@AB?B869@.<-/>

a score=378 mismap=1e-10
s chrM 14921 87 + 16571 GCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCC
s 66       0 87 +    87 GTTTTAATCGTTTTTTTATTAATCGTTTATATTATTTGAGACGTAAATTATGGTTGAATTATTCGTTATTTTTATGTTAATGGCGTT
q 66                    BBC?CCBBB9@CACB@BBB>@BB@BBB<?B1?87+2=A=8/<)8;7@4;@B>AA:B@B<'86@6<48,.=?</</:82>>B<';=@A

a score=401 mismap=1e-10
s chrM 6964 87 - 16571 TGTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCCAGTGCCCTCCTAGTTGGGGGGTAGGGGCTAGGC
s 67      0 87 +    87 TGTTTAGGAGTGGTATTTTTAGGGGATTTAGTGGGGTGATGTTTGTTGGGGGCTAGTGTTTTTTTAGTTGGGGGGTAGGGGTTAGGT
q 67                   A8B<BB;?<B;BB+=B??7>>7A?><A7>@A<<BBB99@BA@B92??@<8@3<3AAA3?@@?<@4@:<14A?A::<>?59?7?1179

a score=401 mismap=1e-10
s chrM 664 87 - 16571 TAGTTTATACTACAAGGACAGGCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAggattaggattGTTGTGAAG
s 68     0 87 +    87 TAGTTTATATTATAAGGATAGGTTTATTTGAGTATTTTGTTTTTAATTAGGGAGATAGTTGGTATTAGGATTAGGATTGTTGTGAAG
q 68                  B?6??BBA?@>=>A4>BBBABB9(<@???B@6=<B18@A.A26>6@=>ABB6/3AA;???A>-7B@3=@@AB=B@?@956??<59:=

a score=358 mismap=1e-10
s chrM 5660 87 + 16571 GACCAATGGGACTTAAACCCACAAACACTTAGTTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACTTCTCCCGCCGCCGGG
s 69      0 87 +    87 GATTAATGGGATTTAAATTTAAAAATATTTAGTTAATAGTTAAGTATTTTAATTAATTGGTTTTAATTTATTTTTTTCGTCGTCTGT
q 69                   B>BB;1ABB?@9ABAABAB@4)?@A>(@>>*>>53A<>0@>@BAA@:7;)@<?AA@AB2',(@((0A@>?=7:>?A@B:@'?.<###

a score=343 mismap=1e-10
s chrM 7675 84 + 16571 CATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGC
s 70      0 84 +    87 TATTTTTTTTATTTGTTTTTTAGTTTTGTATGTTTTTTTTTTAATATTTATAATAAAATTAATTAATATTAATATTTTAGACGT
q 70                   ?ACBCCCCCACBCBCCC=CCC>@7BCAACCBCBC?CBCCACCCC@ACC?AC@BA<C>CACC?@CBBBC67;@)=@>@A*=:B@8

a score=354 mismap=1e-10
s chrM 15444 87 + 16571 TTCTcttccttctctccttaatGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCT
s 71       0 87 +    87 TTTTTTTTTTTTTTTTTTTAATGATATTAATATTATTTTTATCAGATTTTTTAGGCGATTTAGATAATTATATTTTAGTTAATTTTT
q 71                    BCCAB>CBCBBB>?BC@BB?BBB@@A>B?A@BBA<BB??BBBBBBBAB@B@@<A5<=>BABA?A.<,B@ABB@B=88B?@<7@?AAB

a score=270 mismap=1e-10
s chrM 11021 84 + 16571 CCACTATCACGAAAAAAACTCTACCTCTCTATACTAAtctccctacaaatctccttaATTATAACATTCACAGCCACAGAACTA
s 72       0 84 +    87 TTATTATTACAAACAAAATTTTATTTTTTTATAGTAATTTTTTTATAAATTTTTTCAATTTTAATATTTAGAGTAATAGATTTA
q 72                    BAAC?BA=18%<A*=C=1=8*0B@;??9:'@A:.B:A3*7B@6/:AB@B@A2A@C)3,?8%-,524A:)2(B@8(<>=0A):(@

a score=324 mismap=1e-10
s chrM 1887 86 - 16571 TGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGTGGGTTTAGTAATGGGGTTTGTGGGGTTTTCTTCTAAGCCTTCTCCTA
s 73      0 86 +    87 TGCGGGAATAATGATATATGTTTTGTTTTTGTTGAGTGTGGGTTTAGTAATGGGGTTTGTGGGGTTTTTTTTTAGGTTTTTTTTTA
q 73                   BA9@+@B@)@C?CCBC8CCCCBBB/37A-ABC>B@4><+==@+>2@BBBCBBCB@*=???:BA?+<BB-9@A?>)0?>-8*;-9=?

a score=233 mismap=1e-10
s chrM 12266 66 - 16571 TATTTACTCTATCAAAGTAACTCTTTTATCAGACATATTTCTTAGGTTTGAGGGGGAATGCTGGAG
s 74       0 66 +    87 TATTTATTCTATTAAAGTAATTTTTTTATTAGATATATTTCCTAGGTTTGAGGGTTTATTCGGCAG
q 74                    B>C>*3B6)<CBA;=@3AC:B3BBB;A>)@A?CCBBCB:3>)*@B=+??CC<:8############

a score=400 mismap=1e-10
s chrM 10123 85 - 16571 GCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGTGATGAAATTGATGGCCCCTAAGATAGAGGAGACACC
s 75       0 85 +    87 GTGTTTGGTATTGGGTTATGGTAGGGGGTTTTATATTGATAATTGTTGTGATGAAATTGATGGTTTTTAAGATAGAGGAGATACT
q 75                    .CB?CA==A=BCBCABAAA9BBBB;@B?B@B@7@.CA9AACBB==.B;A?CC=,ABB@9;B7<@;;BA>A*BC/CCCC=C,*A--

a score=358 mismap=1e-10
s chrM 4155 87 + 16571 CCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTC
s 76      0 87 +    87 TTAATTTATATATTTTTTATGAAAAAATTTTTTATTATTTATTTTAGTATTATTTATATGATATGTTTCTATATTTATTATAATTTT
q 76                   AB@;:B9>=?>->@@<@8@@B@<:4@57'5<>@B>A@:@??@1>A@9>@B@6@>?@?;>A@@?A@4?A;3'4A>@>A1;7@?>??=5

a score=381 mismap=1e-10
s chrM 5707 87 - 16571 ctaataaTTAGGCTGTGGGTGGTTGTGTTGATTCAAATTATGTGCTTTTTGGAAAGTCATGTCAGTGGTAGTAATATAATTGTTGGG
s 77      0 87 +    87 TTAATAATTAGGTTGTGGGTGGTTGTGTTGATTTAAATTATGTGTTTTTTGGAAAGTTATGTTAGTGGTAGTAATATAATTATTGGG
q 77                   A<:ABB>>9ACABB=494<7?C9;'=BC@AA*<*@/<@6>>>='>/=;A9078+AA@B36;2:B:?>B<B71=>5+2A=:A+1A;>=

a score=332 mismap=1e-10
s chrM 11894 85 + 16571 CTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACT
s 78       0 85 +    87 TTTTTTGTGTTAGTAATTATGTTTTGTTGATTAAATATTATTCTTTTATTTATAGGATTTAATATATTAGTTATAGTTTTATATT
q 78                    B@BCC*B>BBBBBB>A>B<BAA<<A4AA@BA;5?ABA@?09?(9>?<@B;:'8::0479>@?(9/;99@??B<:>A777>=::>9

a score=369 mismap=1e-10
s chrM 10826 87 + 16571 ATTTGAATCAACACAACCACCCACAGCCTAATTATTAGcatcatccccctactattttTTAACCAAATCAACAACAACCTATTTAGC
s 79       0 87 +    87 ATTTGAATTAATATAATTATTTATAGTTTAATTATTAGTATTATTTTTTTATTATTTTTTAATTAAATTAATAATAATTTATTTAGT
q 79                    BCC?BCBBBACB?B:B>4B:9B>A<@@B@BBBA=B?9@AB@AA9BA9?@@A14=BB@>B>@B8@@?@:4:0=<A>@<A>><85:;22

a score=362 mismap=1e-10
s chrM 8356 87 + 16571 TTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACT
s 81      0 87 +    87 TTATAGTGAAATGTTTTAATTAAATATTATCGTATGGTTTATTATAATTATTTTTATATTTTTTATATTATTTTTTATTATTTAATT
q 81                   @C<?BCCBCCB@CB@;BB=4@@>BCAAB@.0;B@@?C@BBA3>AC>8/B=A=C@B<C226A1>8B@B;A<98AB>>)>A?<@@8@<5

a score=431 mismap=1e-10
s chrM 6771 87 - 16571 AAAAATGTTGAGCCGTAGATGCCGTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGGTAAAATAGAGACCC
s 82      0 87 +    87 AAAAATGTTGAGTCGTAGATGTCGTTGGAAATGGTGAAGGGAGATTCGAAGTATTTTGAGGTTTGTAGGAGGGTAATATAGAGATTT
q 82                   @BCAB5BCBCBC?CBCBBAA<BAB@4'AC@ABCCBCCBACBA@B@BCB7<@3A8B?@+>AB:(=74@4'5B@BBB9%:BB39<9<75

a score=338 mismap=1e-10
s chrM 14758 87 - 16571 TTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCCAGGTTTCAATTTCTATCGCCTATACTTTATTTGGGTAAATGG
s 83       0 87 +    87 TTATAATTTTTTATTTTTTTTTTGTGGTATTATATTTATTGCGTTAGGTTTCAATTTTTATTGTTTATATTTTGTTTGGGTAAATGG
q 83                    BBB8BABA@BB@A?BB?C@@<BBBB;B<B@@8?AB<B@AB?@A?B?AB?AA@96<B@9AAAB:B@<A;9@:9A6@6-=8=5>@??4B

a score=318 mismap=1e-10
s chrM 11566 86 + 16571 AATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAG
s 85       0 86 +    87 AATTATAATAAGTTTTATTTGTTTATGATAAATAGATTAAAAATCGTTTATTGTATATTTTTTAATTGGTGATATAGGTCTCGTTG
q 85                    ;(0(@4<3;<.6-<9?BB1B@@@B<.7@B<=<@@9@AB61?:<B@@=98ABA>?A+B8><A+>=?9((A9-2A19,'(@-697@##

a score=363 mismap=1e-10
s chrM 7296 85 - 16571 GAGAGGGCCCCTGTTAGGGGTCATGGGCTGGGTTTTACTATATGATAGGCATGTGATTGGTGGGTCATTATGTGTTGTCGTGCAG
s 86      0 85 +    87 GAGAGGGTTTTTGTTAGGGGTTATGGGTTGGGTTTTATTATATGATAGGTATGTGATTGGTGGGTTATTATGTGTTGCCGCGCAT
q 86                   ,A;B<1@?BC>48C@B?C9BB.<?BC=:CB=BBC=BAB*):C>=='<CBBCC?A+BB==B<@6>B:7+7@B7BBC@C########

a score=375 mismap=1e-10
s chrM 15011 87 + 16571 ATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATT
s 87       0 87 +    87 ATATTTTTTATTTGTTTTTTTTTATATATCGGGCGAGGTTTATATTATGGATTATTTTTTTATTTAGAAATTTGAAATATCGGTATT
q 87                    BACC@=BBBC<C=C@BBA@C=AB@BB=?@BB?BBBBABACAA4A?BBB?AAB?;9?BAB79A7ABBABBABBBBBB?BBBBBBCABC

a score=363 mismap=1e-10
s chrM 715 87 + 16571 AGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCTAGCCAC
s 88     0 87 +    87 AGTGAGTTTATTTTTTAAATTATTATGATTAAAAGGGACAAGTATTAAGTACGTAATAATGTAGTTTAAAACCTTTAGTTTAGTTAT
q 88                  BCCACCCBCCCCBCACB@CCBBCBC>BBAB@CBBBBBBBCCB>BCBB?AABBBBB??B@BCABBAB@BABBBBBBB>BAABBBB@@?

a score=358 mismap=1e-10
s chrM 8407 87 + 16571 CCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAA
s 89      0 87 +    87 TTTTATATTTTTTATATTATTTTTTATTATTTAATTAAAAATATTAAATATAAATTATTATTTATTTTTTTTATTAAAGTTTATAAA
q 89                   9B:):<CCCAC>C:CCAC==B?CCCCCCCCB@BBCBCB<CBCCCB9?<B6BBA;B>CCC@C@<74C=CA/(;8@;-<3B@C=)%51C

a score=278 mismap=1e-10
s chrM 14907 66 - 16571 GTCAAGTTAAGTTGAAATCTCCTAAGTGTAAGTTGGGTGCTTTGTGTTAAGCTACACTCTGGTTCG
s 90       0 66 +    87 GTTAAGTTAAGTTGAAATTTTTTAAGTGTAAGTTGGGTGTTTTGTGTTAAGTTATATTTTGGTTAG
q 90                    8;'6=ABA;1BA.789AA9A>'))4BA??7)?=:(?<1)3@AA>6<@:'.B@?-?:=328124:##

a score=415 mismap=1e-10
s chrM 12743 87 - 16571 AATCAGAGGTGTTCTTGTGTTGTGATAAGGGTGGAGAGGTTAAAGGAGCCACTTATTAGTAATGTTGATAGTAGAATGATGGCTAGG
s 91       0 87 +    87 AATTAGAGGTGTTTTTGTGTTGTGACAAGGGTGGAGAGGTTAAAGGAGTTACTTATTAGTAATGTTGATAGTAGAATGATGGTTAGG
q 91                    -67A@6@>7@4:BABBB==B@BBB@(@59A@BAA@B9>B??32B<A<B=;:3??B:@A;?BA@>='0A@;B>A??A7:5@@@@A@?>

a score=372 mismap=1e-10
s chrM 5909 83 + 16571 CGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAG
s 92      0 83 +    87 CGTCGATCGTTGATTATTTTTTATAAATTATAAAGATATTGGAATATTATATTTATTATTCGGTGTATGAGTTGGAGTTTTAG
q 92                   BB@BBC@CA=@>C<BBB<,B@8@@@>A?B:)=BBBCB3'>A@AAB94;A>B@C@=;)+8BA@B:=1C>1B6C7C=<<%.<6<#

a score=220 mismap=1e-10
s chrM 12740 49 - 16571 AGTAATCAGAGGTGTTCTTGTGTTGTGATAAGGGTGGAGAGGTTAAAGG
s 93       0 49 +    87 AGTAATTAGAGGTGTTTATGTGTTGTGATAAGGGTGGAGAGGTTAAAAG
q 93                    B;/;B=B@AABA*931:)(6B>=?<1/?;6::5,;;78:88790+7:##

a score=329 mismap=1e-10
s chrM 12018 87 + 16571 CCCACCACATTAACAACATAAAACCCTCATTCACACGagaaaacACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCC
s 94       0 87 +    87 TTTATTATATTAATAATATAAAATTTTTATTTATACGAGAAAATATTTTTATGTTTATGTATTTATTTTTTATTTTTTTTTGATTTT
q 94                    @=@@7B;B?@A:ABB@?AC7;A;@;@B@@@8B;AB9?>B?;4@@;>66:A=>@<B7/8'49>@1*:4=;;@:,39:859?8163,3:

a score=289 mismap=1e-10
s chrM 131 74 + 16571 CTTTGATTCCTGCCTCATTCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACCTACTAAAGTG
s 95     0 74 +    87 TTTTGATTTTTGTCTTATTTTATTATTTATCGTATTTACGTTTAATATTATAGGTGAATATATTTATTGAAGAG
q 95                  B@BABA>BB=.=?*@@?2<A?6BA=*?@>>8:?0;=6>@A8?76@7<?@?;99174=9?3216;(:19######

a score=381 mismap=1e-10
s chrM 3991 87 + 16571 ACAAACATTATtataataAACACCCTCACCACTACAATCTTCCTAGGAACAACATATGACGCACTCTCCCCTGAACTCTACACAACA
s 96      0 87 +    87 ATAAATATTATTATAATAAATATTTTTATTATTATAATTTTTTTAGGAATAATATATGACGTATTTTTTTTTGAATTTTATATAATA
q 96                   BBBA=7<A@@?@ABBB?A:A<@?@<??<;?@??=;:?:<<>>@999987;@???????95=<<<;:999:7954::9:537<:::88

a score=259 mismap=1e-10
s chrM 569 65 + 16571 CCCCCCACAGTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCAC
s 97     0 65 +    87 TTTTTTACAGTTTATGTAGTTTATTTTTTTAAAGTAATATATTGAAAATGTTTAGACGCTTTGAC
q 97                  ACB8ABBCBBBABCC=BB=BAB=24=+@@@A@1>@-@@BBAC,B>A8?B94<37BAA>#######

a score=223 mismap=1e-10
s chrM 9562 71 - 16571 CGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAAAGAAAG
s 98      0 71 +    87 CGTGTAGTACGATGTTTAGTGATGAGTTTGTTAATATAGTGTTAGTTAGGTTATGCATTCCGATCATACAG
q 98                   9BBBA6=?8*<(;BAB@7B+AA<<A<)504)/A:A1*<+8B=+A;17A/A#####################

a score=290 mismap=1e-10
s chrM 7545 87 - 16571 CTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATGGGGA
s 99      0 87 +    87 TTGTAATAATATTATCGGTTAGGCGTACGGTTAGGGTTATTGTTTGAATGAGTAGGTTGATGGTTTTGATAATAAACTATTTGGCGT
q 99                   :C@+8';24=+C>B=B8>(>?*>A93B*B+2;((>*BB.,*B*BBC>+)@B>>:?5B>.*&%;'='/=1?77416############

# Query sequences=100 normal letters=8700

TEST lastal -Q0 --split -sFR /tmp/last-test bs1.fastq bs2.fastq
#
# a=21 b=9 A=21 B=9 e=102 d=67 x=101 y=44 z=101 D=1e+06 E=2.97648e+07
# R=10 u=0 s=FR S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.37109 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=33142
# lambda=0.22862 K=0.399124
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   6 -18 -18   1   3 -18 -18   0   1   3
# C -18   6 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# G -18 -18   6 -18 -18   6   1 -18   3 -18   1   0 -18   3
# T -18 -18 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# M   3   3 -18   0   3 -18  -2   1   0   0  -2   0   1   0
# S -18   3   3   0 -18   3   1  -2   0   0   1   0  -2   0
# K -18 -18   3   0 -18   3   1  -2   0   0   1   0  -2   0
# W   3 -18 -18   0   3 -18  -2   1   0   0  -2   0   1   0
# R   3 -18   3 -18   3   3  -2  -2   3 -18  -2   0  -2   3
# Y -18   3 -18   3 -18 -18   1   1 -18   3   1   0   1 -18
# B -18   1   1   1 -18   1   1  -1  -2   1   1   0  -1  -2
# D   1 -18   1  -2   1   1  -1  -1   1  -2  -1   0  -1   1
# H   1   1 -18   1   1 -18  -1   1  -2   1  -1   0   1  -2
# V   1   1   1  -2   1   1  -1  -1   1  -2  -1   0  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# m=1 s=102
#
a score=219 mismap=1e-10
s chrM 1359 50 + 16571 ATGGGCTACATTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTT
s 0/1     0 50 +    50 ATGGGTTATATTTTTTATTTTAGAAAATTATGATAGTTTTTATGAAATTT

a score=231 mismap=1e-10
s chrM 1600 50 + 16571 AACCAGAGTGTAGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTT
s 0/2     0 50 -    50 AATTAGAGTGTAGTTTAATATAAAGTATTTAATTTATATTTAGGAGATTT

a score=192 mismap=7.53e-10
s chrM 12358 50 + 16571 ACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCGT
s 1/1      0 50 +    50 ATCATTTTAATCTTGATTTTTTTAATTTTTTTTATTTTTATTATTTTTGT

a score=231 mismap=1e-10
s chrM 12496 50 + 16571 TTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCAC
s 1/2      0 50 -    50 TTTATGTGTCTAGATTAAGAAGTTATTATTTCGAACTGATATTGAGTTAT

a score=219 mismap=1e-10
s chrM 13044 50 + 16571 CATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAG
s 2/1      0 50 +    50 TATAGAAGGTCCTATTTTAGTTTTAGTTTTATTTTATTTAAGTATTATAG

a score=198 mismap=3.8e-10
s chrM 13233 50 + 16571 AAAAATCGTAGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTA
s 2/2      0 50 -    50 AAAAATTGTAGTTTTTTTTATTTTAAGTTAATTAGGATTTATAGTAGTTA

a score=216 mismap=1.17e-10
s chrM 139 50 + 16571 CCTGCCTCATTCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAA
s 3/1    0 50 +    50 TTTGTCTTATTTTATTATTTATCGTATTTACGTTTAATATTATAGGTGAA

a score=147 mismap=7.76e-06
s chrM 354 46 + 16571 CCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAAT
s 3/2    0 46 -    50 TTTTAAAATCAGAGAACTTTAATATTAGTTTAATAAGATTTTAAAT

a score=216 mismap=1e-10
s chrM 16326 50 - 16571 ATTGTTATTATTATGTCCTACAAGCATTAAttaattaACACACTTTAGTA
s 4/1      0 50 +    50 ATTGTTATTATTATGTTTTATAAGTATTAATTAATTAATATATTTTAGTA

a score=249 mismap=1e-10
s chrM 16510 50 - 16571 GAAAATACCAAATGCATGGAGAGCTCCCGTGAGTGGTTAATAGGGTGATA
s 4/2      0 50 -    50 GAAAATATTAAATGTATGGAGAGTTTTCGTGAGTGGTTAATAGGGTGATA

a score=222 mismap=1e-10
s chrM 15795 50 + 16571 TTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCTaatcctaata
s 5/1      0 50 +    50 TTGGATAAGTAGTATTCGTATTATATTTTATAATAATTTTAATTTTAATA

a score=225 mismap=1e-10
s chrM 16040 50 + 16571 CAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATG
s 5/2      0 50 -    50 TAGATTTGGGTATTACTTAAGTATTGATTTATTTATTAATAATCGTTATG

a score=243 mismap=1e-10
s chrM 7409 50 - 16571 TAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAG
s 6/1     0 50 +    50 TAGGTTTGGATTAAGGTGATAGCGATTTTTAGGATAGTTAGTAGAATTAG

a score=228 mismap=1e-10
s chrM 7621 50 - 16571 TAGTATGGGGATAAGGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTA
s 6/2     0 50 -    50 TAGTAGGGGGATAAGGGGTGTAGGTGTGTTTTGTGGTAAGAAGTGGGTTA

a score=234 mismap=1e-10
s chrM 3560 50 - 16571 GCTGATTTGCCTGctgctgctaggaggaggCCTAGTAGTGGGGTGAGGCT
s 7/1     0 50 +    50 GTTGATTTGTTTGTTGTTGTTAGGAGGAGGTTTAGTAGTGGGGTGAGGTT

a score=216 mismap=1e-10
s chrM 3795 50 - 16571 CGCCCTCTCAGCCGATGAACAGTTGGAATAGGTTGTTAGCGGTAACTAAG
s 7/2     0 50 -    50 CGTTTTATTAGTCGATGAATAGTTGGAATAGGTTGTTAGTGGTAATTAAG

a score=210 mismap=1.14e-10
s chrM 5883 50 + 16571 CATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTAC
s 8/1     0 50 +    50 TATTTTATTTTATCTTTACTGATGTTCGTCGATCGTTGATTATTTTTTAT

a score=228 mismap=1e-10
s chrM 6165 50 + 16571 GGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACT
s 8/2     0 50 -    50 GGTGTTTTCGATATGGCGTTTTTTCGTATAAATAATATAAGTTTTTGACT

a score=240 mismap=1e-10
s chrM 2286 50 - 16571 GGGGTCAGGGTTGATTCGGGAGGATCCTATTGGTGCGGGGGCTTTGTATG
s 9/1     0 50 +    50 GGGGTTAGGGTTGATTCGGGAGGATTTTATTGGTGTGGGGGTTTTGTATG

a score=219 mismap=1.14e-10
s chrM 2497 50 - 16571 GGTTGAGGTGATGATGGAGGTGGAGATTTGGTGCTGTGAAATTGTTTTAG
s 9/2     0 50 -    50 GGTTGAGGTGATGATGGAGGTGGAGCTTTGGTGTTGTGAAATTGTTTTAG

a score=228 mismap=1e-10
s chrM 842 50 + 16571 ACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGC
s 10/1   0 50 +    50 ATGAAAGTTTAATTAAGTTATATTAATTTTAGGGTTGGTTAATTTCGTGT

a score=240 mismap=1e-10
s chrM 1040 50 + 16571 ATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCAC
s 10/2    0 50 -    50 ATATTTGAATATACAATAGTTAAGATTCAAATTGGGATTAGATATCTTAT

a score=192 mismap=1.13e-09
s chrM 3144 50 + 16571 AAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATATCATCTCAACT
s 11/1    0 50 +    50 AAGGTTTATTTTATAAAGTGGTTTTTTTTGTAAATGATATTATTTTAATT

a score=231 mismap=1e-10
s chrM 3347 50 + 16571 TAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTAT
s 11/2    0 50 -    50 TAATTGTAATGGTATTTTTAATGTTTATCGAACGAAAAATTTTAGGTTAT

a score=132 mismap=0.000278
s chrM 12517 30 - 16571 TGCGTCATATGTTGTTCCTAGGAAGATTGT
s 12/1     0 30 +    50 TGTGTTATATGTTGTTTTTAGGAAGATTGT

a score=252 mismap=1e-10
s chrM 12700 50 - 16571 GGAGATAAATCATATTATGGCCAAGGGTCATGATGGCAGGAGTAATCAGA
s 12/2     0 50 -    50 GGAGATAAATTATATTATGGCTAAGGGTTATGATGGTAGGAGTAATTAGA

a score=231 mismap=1e-10
s chrM 2339 50 - 16571 ATGGGCGTTGATTAGTAGTGGTTACTGGTTGAACATTGTTTGTTGGTGTA
s 13/1    0 50 +    50 ATGGGCGTTGATTAGTAGTGGTTATTGGTTGAATATTGTTTGTTGGTGTA

a score=222 mismap=1e-10
s chrM 2525 50 - 16571 TGGTGCTGTGAAATTGTTTTAGGTAATAGCTTTTCTAGTCAGGTTAGGTC
s 13/2    0 50 -    50 TGGTGTTGTGAAATTGTTTTAGGTAATAGTTTTTTTAGTTAGGTTAGGTT

a score=243 mismap=1e-10
s chrM 11303 50 - 16571 AATGGCCCATTTGGGCAAAAAGCCGGTTAGCGGGGGCAGGCCTCCTAGGG
s 14/1     0 50 +    50 AATGGTTTATTTGGGTAAAAAGTCGGTTAGTGGGGGTAGGTTTTTTAGGG

a score=228 mismap=1e-10
s chrM 11531 50 - 16571 TATTCATCCTATGTGGGTAATTGAGGAGTATGCTAAGATTTTGCGTAGCT
s 14/2     0 50 -    50 TATTTATTTTATGTGGGTAATTGAGGAGTATGTTAAGATTTTGCGTAGTT

a score=225 mismap=1e-10
s chrM 13546 50 - 16571 GCGGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCT
s 15/1     0 50 +    50 GTGGTTGTATTATTGGGATGTTTTGATTTAATATCGAGGTTGTAAATTTT

a score=210 mismap=1.76e-10
s chrM 13756 45 - 16571 AACCGAAATTTTTAATGCAGGTTTGGTAGTTTAGGACCTGTGGGT
s 15/2     0 45 -    50 AATCGAAATTTTTAATGTAGGTTTGGTAGTTTAGGATTTGTGGGT

a score=219 mismap=1e-10
s chrM 16172 50 - 16571 TTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTTTTGGGGTTTGG
s 16/1     0 50 +    50 TTTGAAATTTGGTTAGGTTGGTGTTAGGGTTTTTTGTTTTTGGGGTTTGG

a score=219 mismap=1e-10
s chrM 16336 50 - 16571 TTATGTCCTACAAGCATTAAttaattaACACACTTTAGTAGGTATGTTCG
s 16/2     0 50 -    50 TTATGTTTTATAAGTATTAATTAATTAATATATTTTAGTAGGTATGTTTG

a score=219 mismap=1e-10
s chrM 11570 50 - 16571 TTTGCGTAGCTGGGTTTGGTTTAATCCACCTCAACTGCCTGCTATGATGG
s 17/1     0 50 +    50 TTTGCGTAGTTGGGTTTGGTTTAATTCATTTTAATTGTTTGTTATGATGG

a score=189 mismap=1.27e-09
s chrM 11134 50 - 16571 TGGGTTTTGTATGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATG
s 18/1     0 50 +    50 TGGGTTTTGTATGTTTAAATTGTTATTTTATTTTTACGTTGTTGGATATG

a score=240 mismap=1e-10
s chrM 11357 50 - 16571 GAGGGTGGATGGAATTAAGGGTGTTAGTCATGTTAGCTTGTTTCAGGTGC
s 18/2     0 50 -    50 GAGGGTGGATGGAATTAAGGGTGTTAGTTATGTTAGTTTGTTTTAGGTGC

a score=234 mismap=1e-10
s chrM 8517 50 - 16571 TGATGTAATTATTATACGAATGGGGGCTTCAATCGGGAGTACTACTCGAT
s 19/1    0 50 +    50 TGATGTAATTATTATACGAATGGGGGTTTTAATTGGGAGTATTATTTGAT

a score=195 mismap=7.68e-10
s chrM 8695 50 - 16571 ATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAG
s 19/2    0 50 -    50 ATGGTAAGGGAGGGATTCTTGATTTCGTTTGTTATGTAAAGTATGTGTAG

a score=240 mismap=1e-10
s chrM 11880 50 - 16571 ATAGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTT
s 20/1     0 50 +    50 ATAGTTATTAGAAGGATTATGGATGTGGTTGTTTGCGTGAGGAAATATTT

a score=213 mismap=4.29e-10
s chrM 12069 50 - 16571 GAGTAGATGACGGGTTGGGCCAGGGGATTAATTAGTACGGGAAGGGTATA
s 20/2     0 50 -    50 GAGTAGATGGTGGGTTGGGTTAGGGGACTAATTAGTACGGGAAGGGTATA

a score=186 mismap=1.57e-09
s chrM 14107 50 + 16571 TTcttcttcccactcatcctaaccctactcctaaTCACATAACCTATTCC
s 21/1     0 50 +    50 TTTTTTTTTTTATTTATTTTAATTTTATTTTTAATTATATAATTTATTTT

a score=204 mismap=2.24e-10
s chrM 14332 50 + 16571 AaccaccaccccATCATACTCTTTCACCCACAGCACCAATCCTACCTCCA
s 21/2     0 50 -    50 AATTACTATTTTATTATATTTTTTTATTTATAGTATTAATTTTATTTCTA

a score=201 mismap=2.3e-10
s chrM 13784 50 + 16571 ccCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTA
s 22/1     0 50 +    50 TTTTTTATTTAAAATTTATAGTTTTCGTTGTTATTTTTTTAGGATTTTTA

a score=210 mismap=1.31e-10
s chrM 13922 50 + 16571 ACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGC
s 22/2     0 50 -    50 ATTTTAGTATTATATATTGTATAATTTTTTATTTAGGTTTTTTTACGAGT

a score=243 mismap=1e-10
s chrM 10023 50 - 16571 AGGTTGCGGTCTGTTAGTAGTATAGTGATGCCAGCAGCTAGGACTGGGAG
s 23/1     0 50 +    50 AGGTTGCGGTTTGTTAGTAGTATAGTGATGTTAGTAGTTAGGATTGGGAG

a score=222 mismap=1.07e-10
s chrM 10273 50 - 16571 AGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCA
s 23/2     0 50 -    50 AGGGAGGGTAGATTGTTTAATTTGTTTTTGTTTTGGTTTCTATTATAGTA

a score=228 mismap=1e-10
s chrM 15743 50 - 16571 TAATCACTGCTGTTTCCCGTGGGGGTGTGGCTAGGCTAAGCGTTTTGAGC
s 24/1     0 50 +    50 TAATTACTGTTGTTTTTCGTGGGGGTGTGGTTAGGTTAAGTGTTTTGAGT

a score=222 mismap=1e-10
s chrM 15914 50 - 16571 AACCTATTTGTTTATGGGGTGATGTGAGCCCGTCTAAACATTTTCAGTGT
s 24/2     0 50 -    50 AATTTATTTGTTTATGGGGTGATGTGAGTTCGTTTAAATATTTTTAGTGT

a score=252 mismap=1e-10
s chrM 6740 50 - 16571 GACGTGAAGTCCGTGGAAGCCTGTGGCTACAAAAAATGTTGAGCCGTAGA
s 25/1    0 50 +    50 GACGTGAAGTTCGTGGAAGTTTGTGGTTATAAAAAATGTTGAGTCGTAGA

a score=204 mismap=1.4e-10
s chrM 6972 46 - 16571 AGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCC
s 25/2    4 46 -    50 AGTGGGATTTGTAGGGGATTTAGTGGGGTGATGTCTGTTGGGGGCT

a score=237 mismap=1e-10
s chrM 12890 50 - 16571 GAGTTTGATGCTCACCCTGATCAGAGGATTGAGTAAACGGCTAGGCTAGA
s 26/1     0 50 +    50 GAGTTTGATGTTTATTTTGATTAGAGGATTGAGTAAATGGTTAGGTTAGA

a score=213 mismap=1e-10
s chrM 13065 45 - 16571 TAGATGTGGCGGGTTTTAGGGGCTCTTTGGTGAAGAGTTTTATGG
s 26/2     0 45 -    50 TAGATGTGGCGGGTTTTAGGGGTTTTTTGGTGAAGAGTTTTATGG

a score=222 mismap=1e-10
s chrM 16316 50 - 16571 CAGACATTCAATTGTTATTATTATGTCCTACAAGCATTAAttaattaACA
s 27/1     0 50 +    50 CAGATATTTAATTGTTATTATTATGTTTTATAAGTATTAATTAATTAATA

a score=243 mismap=1e-10
s chrM 16485 50 - 16571 GCTATCGCGTGCACACCCCCCAGACGAAAATACCAAATGCATGGAGAGCT
s 27/2     0 50 -    50 GTTATCGCGTGTATATTTCTTAGACGAAAATATTAAATGTATGGAGAGTT

a score=228 mismap=1e-10
s chrM 3034 50 + 16571 TTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAG
s 28/1    0 50 +    50 TTTGTTTGTTTAATGATTAAAGTTTTACGTGATTTGAGTTTAGATCGGAG

a score=219 mismap=1e-10
s chrM 3172 50 + 16571 CGTAAATGATATCATCTCAACTTAGTATTATACCCACACCCACCCAAGAA
s 28/2    0 50 -    50 TGTAAATGATATTATTTTAATTTAGTATTATATTTATATTTATTTAAGAA

a score=183 mismap=4.89e-09
s chrM 9834 50 + 16571 ATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCA
s 29/1    0 50 +    50 ATTGGCTCAATTTTTTTTAGTATTTGTTTTATTTGTTAATTAATATTTTA

a score=174 mismap=3e-08
s chrM 10000 50 + 16571 GTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGACAACATTCAA
s 29/2     0 50 -    50 GTATAAATAGTATTGTTCATTTTTAATTAATTAGTTTTGATATTATTTAA

a score=210 mismap=1.09e-10
s chrM 7913 50 + 16571 TACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATT
s 30/1    0 50 +    50 TATATCGATTACGGTGGATTAATTTTTAATTTTTATATATTTTTTTTATT

a score=228 mismap=1e-10
s chrM 8119 50 + 16571 TCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTC
s 30/2    0 50 -    50 TTTAAATTAAATTATTTTTATCGTTATACGATCGGGGGTATATTATGGTT

a score=234 mismap=1e-10
s chrM 419 50 - 16571 GGTGGTCAAGTATTTATGGTACCGTACAATATTCATGGTGGCTGGCAGTA
s 31/1   0 50 +    50 GGTGGTTAAGTATTTATGGTATCGTATAATATTTATGGTGGTTGGTAGTA

a score=228 mismap=1e-10
s chrM 558 50 - 16571 TTAAATTAGAATCTTAGCTTTGGGTGCTAATGGTGGAGTTAAAGACTTTT
s 31/2   0 50 -    50 TTAAATTAGAATTTTAGTTTTGGGTGTTAATGGTGGAGTTAAAGATTTTT

a score=207 mismap=1.76e-10
s chrM 5350 50 + 16571 TACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAAC
s 32/1    0 50 +    50 TATGTTTAATTTATTTTATCTTAATTATATTATTCTTTATATTTAATAAT

a score=222 mismap=1e-10
s chrM 5563 50 + 16571 GCAATACTTAATTTCTGCAACAGCTAAGGACTGCAAAACCCCACTCTGCA
s 32/2    0 50 -    50 GTAATATTTAATTTTTGTAATAGTTAAGGATTGTAAAATTTTATTTTGTA

a score=177 mismap=1.52e-08
s chrM 9456 50 + 16571 ATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGC
s 33/1    0 50 +    50 ATTTTATTTATTATTTTAGAAATTTTTTTTTTTGTAGGATTTTTTTGAGT

a score=180 mismap=6.85e-09
s chrM 9614 40 + 16571 ATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCAT
s 33/2   10 40 -    50 ATTATTCGCATTAGGAGTATTAATTATTTGAGTTTATTAT

a score=228 mismap=1e-10
s chrM 15757 50 - 16571 TCCCGTGGGGGTGTGGCTAGGCTAAGCGTTTTGAGCTGCATTGCTGCGTG
s 34/1     0 50 +    50 TTTTGTGGGGGTGTGGTTAGGTTAAGTGTTTTGAGTTGTATTGTTGCGTG

a score=261 mismap=1e-10
s chrM 16062 50 - 16571 AGGATGGGCGGGGGTTGTATTGATGAGATTAGTAGTATGGGAGTGGGAGG
s 34/2     0 50 -    50 AGGATGGGCGGGGGTTGTATTGATGAGATTAGTAGTATGGGAGTGGGAGG

a score=243 mismap=1e-10
s chrM 1031 50 - 16571 GGGTGTTTAAGGGGTTGGCTAGGGTATAATTGTCTGGGTCGCCTAGGAGG
s 35/1    0 50 +    50 GGGTGTTTAAGGGGTTGGTTAGGGTATAATTGTTTGGGTCGTTTAGGAGG

a score=234 mismap=1e-10
s chrM 1204 50 - 16571 TTGTTTGATCCCGTTTCGTGCAAGAATAGGAGGTGGAGTGCTGCTAGGGC
s 35/2    0 50 -    50 TTGTTTGATTTCGTTTTGTGTAAGAATAGGAGGTGGAGTGTTGTTAGGGT

a score=228 mismap=1e-10
s chrM 7315 50 - 16571 GTCATGGGCTGGGTTTTACTATATGATAGGCATGTGATTGGTGGGTCATT
s 36/1    0 50 +    50 GTTATGGGTTGGGTTTTATTATATGATAGGTATGTGATTGGTGGGTTATT

a score=237 mismap=1e-10
s chrM 7491 50 - 16571 TAATGGTTGATATTGCTAGGGTGGCGCTTCCAATTAGGTGCATGAGTAGG
s 36/2    0 50 -    50 TAATGGTTGATATTGTTAGGGTGGCGTTTTTAATTAGGTGTATGAGTAGG

a score=207 mismap=1.39e-10
s chrM 6315 50 + 16571 CACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGG
s 37/1    0 50 +    50 TATTTTGGAGTTTTTGTAGATTTAATTATTTTTTTTTTATATTTAGTAGG

a score=198 mismap=4.56e-10
s chrM 6472 50 + 16571 TCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATC
s 37/2    0 50 -    50 TTATAGTAGTTCTATTTTTTTTATTTTTTTTAGTTTTAGTTGTTGGTATT

a score=216 mismap=1e-10
s chrM 10102 50 + 16571 TACtactaataattattaCATTTTGACTACCACAACTCAACGGCTACATA
s 38/1     0 50 +    50 TATTATTAATAATTATTATATTTTGATTATTATAATTTAATGGTTATATA

a score=135 mismap=0.000134
s chrM 10302 50 + 16571 ACTAACCTGCCACTAATAGTTATGTCATCCCTCTTATTaatcatcatCCT
s 38/2     0 50 -    50 ATTAATTAGTTATTAATAGTAATGTTATTTTTTTTATTATTTATTATTTT

a score=258 mismap=1e-10
s chrM 5592 50 - 16571 TAGGAGTCAGGTAGTTAGTATTAGGAGgggggTTGTTAGGGGGTCGGAGG
s 39/1    0 50 +    50 TAGGAGTTAGGTAGTTAGTATTAGGAGGGGGGTTGTTAGGGGGTCGGAGG

a score=234 mismap=1e-10
s chrM 5821 50 - 16571 TTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACTAGT
s 39/2    0 50 -    50 TTAGGTTATGTATGTAGTTTAGGTCATATGTGTTGGAGATTGAGATTAGT

a score=228 mismap=1e-10
s chrM 5775 50 + 16571 TTGAAGCTGCTTCTTCGAATTTGCAATTCAATATGAAAATCACCTCGGAG
s 40/1    0 50 +    50 TTGAAGTTGTTTTTTCGAATTTGTAATTTAATATGAAAATTATTTCGGAG

a score=222 mismap=1.1e-10
s chrM 5827 50 + 16571 GGTAAAAAGAGGCCTAACCCCTGTCTTTAGATTTACAGTCCAATGCTTCA
s 40/2    0 50 -    50 GGTAAAAAGAGGTTTAATTTTTGTTTTTAGATTTATAGTTTAATGTTTTA

a score=222 mismap=1e-10
s chrM 1698 50 + 16571 ACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATA
s 41/1    0 50 +    50 ATTTTATTATTAGATAATTTTAGTTAAATTATTTATTTAAATAAAGTATA

a score=177 mismap=1.01e-08
s chrM 2002 50 + 16571 CGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTA
s 41/2    0 50 -    50 TGAGTTTGGTGATAATTGGTTGTTTAAGATAGAATTTTAGTTTCATTTTA

a score=192 mismap=5.52e-10
s chrM 680 50 + 16571 CTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTC
s 42/1   0 50 +    50 TTTAGTAAGATTATATATGTAAGTATTTTCATTTTAGTGAGTTTATTTTT

a score=225 mismap=1e-10
s chrM 846 50 + 16571 AAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGC
s 42/2   0 50 -    50 AAGTTTAATTAAGTTATATTAATTTTAGGGTTGGTTAATTTCGTGTTAGT

a score=237 mismap=1e-10
s chrM 1450 50 - 16571 GCTATAGTTGCAAGCAGGAGGATAATGCCGATGTTTCAGGTTTCTGAGTA
s 43/1    0 50 +    50 GTTATAGTTGTAAGTAGGAGGATAATGTCGATGTTTTAGGTTTTTGAGTA

a score=231 mismap=1e-10
s chrM 1747 47 - 16571 TTGGATGGGGTGGGGAGGTCGATGAATGAGTGGTTAATTAATTTTAT
s 43/2    3 47 -    50 TTGGATGGGGTGGGGAGGTCGATGAATGAGTGGTTAATTAATTTTAT

a score=261 mismap=1e-10
s chrM 12978 50 - 16571 CCAGGGGGTTGGGTATGGGGAGGGGGGTTCATAGTAGAAGAGCGATGGTG
s 44/1     0 50 +    50 TTAGGGGGTTGGGTATGGGGAGGGGGGTTTATAGTAGAAGAGCGATGGTG

a score=159 mismap=5.2e-07
s chrM 13250 33 - 16571 TTGGCCATGGGTATGTTGTTAAGAAGAGGAATT
s 44/2    17 33 -    50 TTGGTTATGGGTATGTTGTTAAGAAGAGGAATT

a score=231 mismap=1e-10
s chrM 3701 50 + 16571 CACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATC
s 45/1    0 50 +    50 CATTGCGAGTAGTAGTTTAAATAATTTTATATGAAGTTATTTTAGCTATT

a score=231 mismap=1e-10
s chrM 3916 50 + 16571 GAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTT
s 45/2    0 50 -    50 GAGTTCGAATTAGTTTTAGGTTTTAATATCGAATACGTCGTAGGTTTTTT

a score=210 mismap=1e-10
s chrM 9431 46 + 16571 CCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAA
s 46/1    0 46 +    50 TTAAAAAGGTTTTTGATACGGGATAATTTTATTTATTATTTTAGAA

a score=195 mismap=7.51e-10
s chrM 9608 50 + 16571 ATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTC
s 46/2    0 50 -    50 ATTTGTATTATTCGTATTAGGACTATTAATTATTTGAGTTTATTATAGTT

a score=201 mismap=2.13e-10
s chrM 16163 50 - 16571 AAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTTTT
s 47/1     0 50 +    50 AAGATAAAATTTGAAATTTGGTTAGGTTGGTGTTAGGCTTTTTTGTTTTT

a score=237 mismap=1e-10
s chrM 16391 50 - 16571 AATATTGAACGTAGGTGCGATAAATAATAGAATGAGGCAGGAATCAAAGA
s 47/2     0 50 -    50 AATATTGAATGTTGGTGCGATAAATAATAGAATGAGGTAGGAATTAAAGA

a score=246 mismap=1e-10
s chrM 16111 50 - 16571 GGGAAAATAATGTGTTAGTTGGGGGGTGACTGTTAAAAGTGCATACCGCC
s 48/1     0 50 +    50 GGGAAAATAATGTGTTAGTTGGGGGGTGATTGTTAAAAGTGTATATCGTT

a score=222 mismap=1e-10
s chrM 16314 50 - 16571 TGCAGACATTCAATTGTTATTATTATGTCCTACAAGCATTAAttaattaA
s 48/2     0 50 -    50 TGCAGATATTTAATTGTTATTATTATGTTTTATAAGTATTAATTAATTAA

a score=222 mismap=1.3e-10
s chrM 8819 50 + 16571 tatctATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATT
s 49/1    0 50 +    50 TATTTATAAATTTAGTTATGGTTATTTTTTTATGAGTGGGCGTAGTGATT

a score=201 mismap=2.47e-10
s chrM 9078 50 + 16571 TAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTA
s 49/2    0 50 -    50 TAATTTTTTTTTTATATTTATTATTTTCATAATTTTAATTTTATTGACTA

a score=210 mismap=1.3e-10
s chrM 10458 50 + 16571 CATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAGCATTTAC
s 50/1     0 50 +    50 TATATTTATTAAATGTTTTTTATTTATATAAATATTATATTAGTATTTAT

a score=132 mismap=0.000253
s chrM 10665 32 + 16571 TTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGC
s 50/2    18 32 -    50 TTTGTCGTCTGTGAAGTAGCGGAGGGTTTAGT

a score=252 mismap=1e-10
s chrM 1882 50 + 16571 AAGGAGAGCCAAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAAC
s 51/1    0 50 +    50 AAGGAGAGTTAAAGTTAAGATTTTCGAAACTAGATGAGTTATTTAAGAAT

a score=219 mismap=1e-10
s chrM 2050 50 + 16571 TAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAG
s 51/2    0 50 -    50 TAAATTTGCTTATAGAATTTTTTAAATCTTTTTGTAAATTTAATTGTTAG

a score=219 mismap=1e-10
s chrM 14199 50 + 16571 TTCAACCAGTAACCACTACTAATCAACGCCCATAATCATACAAAGCCCCC
s 52/1     0 50 +    50 TTTAATTAGTAATTATTATTAATTAACGTTTATAATTATATAAAGTTTTT

a score=117 mismap=0.00835
s chrM 14330 45 + 16571 ACAaccaccaccccATCATACTCTTTCACCCACAGCACCAATCCT
s 52/2     5 45 -    50 ATAATTACTGTTATATTATATTTTTTTATTTAGAGTATTAATTTT

a score=249 mismap=1e-10
s chrM 1305 50 + 16571 CAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCA
s 53/1    0 50 +    50 TAAGTATTTACGTAAAGACGTTAGGTCAAGGTGTAGTTTATGAGGTGGTA

a score=201 mismap=2.78e-10
s chrM 1498 50 + 16571 CCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATA
s 53/2    0 50 -    50 TTTTAAGTATATTTTAAAGGAAATTTAATTAAAATTTTTACGTATTTATA

a score=222 mismap=1e-10
s chrM 2326 50 + 16571 TCTCCTCCGCATAAGCCTGCGTCAGATCAAAACACTGAACTGACAATTAA
s 54/1    0 50 +    50 TTTTTTTTGTATAAGTTTGTGTTAGATTAAAATATTGAATTGATAATTAA

a score=147 mismap=8.19e-06
s chrM 2515 50 + 16571 CTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTT
s 54/2    0 50 -    50 TTTTAGTATTATTAGTATTAGAAGTATGATTTGTTTAGTGATATATGTTT

a score=234 mismap=1e-10
s chrM 3320 50 - 16571 GAGAAGGCTACGATTTTTTTGATGTCATTTTGTGTAAGGGCGCAGACTGC
s 55/1    0 50 +    50 GAGAAGGCTATGATTTTTTTGATGTTATTTTGTGTAAGGGCGTAGATTGT

a score=252 mismap=1e-10
s chrM 3494 50 - 16571 AGTAGGGCTGAGACTGGGGTGGGGCCTTCTATGGCTGAGGGGAGTCAGGG
s 55/2    0 50 -    50 AGTAGGGCTGAGATTGGGGTGGGGTTTTTTATGGTTGAGGGGAGTTAGGG

a score=198 mismap=4.38e-10
s chrM 683 50 + 16571 AGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAA
s 56/1   0 50 +    50 AGTAAGATTATATATGTAAGTATTTTCATTTTAGTGAGTTTATTTTTTAA

a score=228 mismap=1e-10
s chrM 791 50 + 16571 AGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATA
s 56/2   0 50 -    50 AGTTTAGTTATATTTTTATGGGAAATAGTAGTGATTAATTTTTAGTAATA

a score=225 mismap=1e-10
s chrM 1150 50 + 16571 GCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGA
s 57/1    0 50 +    50 GTTATAGTTTAAAATTTAAAGGATTTGGCGGTGTTTTATATTTTTTTAGA

a score=219 mismap=2.4e-10
s chrM 1379 50 + 16571 CAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTA
s 57/2    0 50 -    50 TAGAAAATTATGATAGTTTTTATGAATTTTAAGGGTCGAAGGTGGATTTA

a score=213 mismap=1e-10
s chrM 8278 50 + 16571 CTaccccctctaGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAA
s 58/1    0 50 +    50 TTATTCTTTTTAGAGTTTATTGTAAAGTTAATTTAGTATTAATTTTTTAA

a score=213 mismap=1e-10
s chrM 8474 50 + 16571 CCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACC
s 58/2    0 50 -    50 TTTTTATTAAAGTTTATAAAAATAAAAAATTATAATAAAATTTGAGAATT

a score=258 mismap=1e-10
s chrM 5629 50 - 16571 AGGGGGTCGGAGGAAAAGGTTGGGGAACAGCTAAATAGGTTGTTGTTGAT
s 59/1    0 50 +    50 AGGGGGTCGGAGGAAAAGGTTGGGGAATAGTTAAATAGGTTGTTGTTGAT

a score=234 mismap=1e-10
s chrM 5846 50 - 16571 ATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCCACCGCTGCTTCGC
s 59/2    0 50 -    50 ATATGTGTTGGAGATTGAGATTAGTAGGGTTAGGTTTATCGTTGTTTCGT

a score=246 mismap=1e-10
s chrM 9910 50 - 16571 TTCCGAAGCCTGGTAGGATAAGAATATAAACTTCAGGGTGACCGAAAAAT
s 60/1    0 50 +    50 TTTTGAAGTTTGGTAGGATAAGAATATAAATTTTAGGGTGATCGAAAAAT

a score=222 mismap=1e-10
s chrM 10109 50 - 16571 TCAGACGAAGAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATAT
s 60/2     0 50 -    50 TTAGACGAAGAGGGGTGTTTGGTATTGGGTTACGGTAGGGGGTTTTATAT

a score=195 mismap=5.9e-10
s chrM 430 50 + 16571 GTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTA
s 61/1   0 50 +    50 GTTATTCTTTAATTAATATATTATTTTTTTTTTTTATTTTTATATTATTA

a score=240 mismap=1e-10
s chrM 11592 50 - 16571 AATCCACCTCAACTGCCTGCTATGATGGATAAGATTGAGAGAGTGAGGAG
s 62/1     0 50 +    50 AATTTATTTTAATTGTTTGTTATGATGGATAAGATTGAGAGAGTGAGGAG

a score=240 mismap=1e-10
s chrM 4615 50 - 16571 TTGAGTCCTGTAAGTAGGAGAGTGATATTTGATCAGGAGAACGTGGTTAC
s 63/1    0 50 +    50 TTGAGTTTTGTAAGTAGGAGAGTGATATTTGATTAGGAGAATGTGGTTAT

a score=159 mismap=7.68e-07
s chrM 4756 42 - 16571 AGTAGAGTTTGAAGTCCTTGAGAGAGGATTATGATGCGACTG
s 63/2    0 42 -    50 AGTAGTGTTTGAACTTTTTGAGAGAGGATTATGATGCGATTG

a score=246 mismap=1e-10
s chrM 3467 50 - 16571 CCTGCTACAACTATAGTGCTTGAGTGGAGTAGGGCTGAGACTGGGGTGGG
s 64/1    0 50 +    50 TTTGTTATAACTATAGTGTTTGAGTGGAGTAGGGCTGAGATTGGGGTGGG

a score=249 mismap=1e-10
s chrM 3645 50 - 16571 CTCATGAGTTGGAGTGTAGGATAAATCATGCTAAGGCGAGGATGAAACCG
s 64/2    0 50 -    50 TTTATGAGTTGGAGTGTAGGATAAATTATGTTAAGGTGAGGATGAAATCG

a score=237 mismap=1e-10
s chrM 1508 50 + 16571 ACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATATAGAGGAGAC
s 65/1    0 50 +    50 ATTTTAAAGGATATTTAATTAAAATTTCTACGTATTTATATAGAGGAGAT

a score=228 mismap=1e-10
s chrM 1765 50 + 16571 CCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACC
s 65/2    0 50 -    50 TTTGGCGTAACAGATATAGTATTGTAAGGGAAAGATGAAAAATTATAATT

a score=225 mismap=1e-10
s chrM 15355 50 + 16571 GGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCT
s 66/1     0 50 +    50 GGGATTAAATAATTTTTTAGGAATTATTTTTTATTTCGATAAAATTACTT

a score=216 mismap=1e-10
s chrM 15589 50 + 16571 CCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCA
s 66/2     0 50 -    50 TTGATTCGTTTTTAATAAATTAGGAGGTGTTTTTGTCTTATTATTATTTA

a score=240 mismap=1e-10
s chrM 379 50 - 16571 gggggggggtttGATGTGGGTTGGGTTTTTATGTACTACAGGTGGTCAAG
s 67/1   0 50 +    50 GGGGGGGGGTTTGATGTGGGTTGGGTTTTTATGTATTATAGGTGGTTAAG

a score=195 mismap=4.06e-10
s chrM 615 50 - 16571 TTTGTCCTTGGAAAAAGGTTTTCGTCTCCGGTTTACAAGACTGGTGTATT
s 67/2   0 50 -    50 TTTGTTTTTGGAAAAAGGTTTTCGTTTTTGGTTTATGAGATTGGTGTATT

a score=192 mismap=9.77e-10
s chrM 12357 50 + 16571 AACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCG
s 68/1     0 50 +    50 AATTATTTTAATCTTGATTTTTTTAATTTTTTTTATTTTTATTATTTTTG

a score=204 mismap=1.73e-10
s chrM 12383 50 + 16571 TTCCCCCCATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATAC
s 68/2     0 50 -    50 TTTTTTTTATTTTTATTATTTTTGTTAATTTTAATAAAAAAAATTTATAT

a score=225 mismap=1e-10
s chrM 15170 50 - 16571 TAAGGGCTATCGTAGTTTTCTGGGGTAGAAAATGTAGCCCATTTCTTGCC
s 69/1     0 50 +    50 TAAGGGTTATCGTAGTTTTTTGGGGTAGAAAATGTAGTTTATTTTTTGTT

a score=225 mismap=1e-10
s chrM 15366 50 - 16571 GCTCCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCT
s 69/2     0 50 -    50 GTTTTTTTAGAGGGATATGAAGTATCGTTAGGTTTTTTGAGTTTTAAGTT

a score=219 mismap=1.12e-10
s chrM 16241 50 + 16571 AACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTA
s 70/1     0 50 +    50 AATTGTAATTTTAAAGTTATTTTTTATTTATTAGGATATTAATAAATTTA

a score=219 mismap=1e-10
s chrM 16393 50 + 16571 TCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTA
s 70/2     0 50 -    50 TCTTTTGATTATTATTTTTCGTGAAATTAATATTTTGTATAAGAGTGTTA

a score=234 mismap=1e-10
s chrM 10762 50 - 16571 ATATTGAATTGCAAATTCGAAGAAGCAGCTTCAAACCTGCCGGGGCTTCT
s 71/1     0 50 +    50 ATATTGAATTGTAAATTCGAAGAAGTAGTTTTAAATTTGTCGGGGTTTTT

a score=222 mismap=1e-10
s chrM 10941 50 - 16571 GATTTGCGTTCAGTTGATGCAGAGTGGGGTTTTGCAGTCCTTAGCTGTTG
s 71/2     0 50 -    50 GATTTGTGTTTAGTTGATGTAGAGTGGGGTTTTGTAGTTTTTAGTTGTTG

a score=222 mismap=1e-10
s chrM 3333 50 + 16571 CATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAA
s 72/1    0 50 +    50 TATTGTATTTATTTTAATTGTAATGGTATTTTTAATGTTTATCGAACGAA

a score=201 mismap=1.7e-10
s chrM 3507 50 + 16571 CATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTC
s 72/2    0 50 -    50 TATTATTTTCTATATTATTGCTTCGATTTTAGTTTTTATTATCGTTTTTT

a score=240 mismap=1e-10
s chrM 12369 50 - 16571 CTAGGGTGAGTGGTAGGAAGTTTTTTCATAGGAGGTGTATGAGTTGGTCG
s 73/1     0 50 +    50 TTAGGGTGAGTGGTAGGAAGTTTTTTTATAGGAGGTGTATGAGTTGGTTG

a score=207 mismap=2.52e-10
s chrM 12593 50 - 16571 AAGAATAGGGCGAAGGGGCCTGCGGCGTATTCGATGTTGAAGCCTGAGAC
s 73/2     0 50 -    50 AAGAAGAGGGCGAAGGGGTTTGTTGCGTATTTGATGTTGAAGTTTGAGAT

a score=252 mismap=1e-10
s chrM 4421 50 - 16571 AACTATATTTACAAGAGGAAAACCCGGTAATGATGTCGGGGTTGAGGGAT
s 74/1    0 50 +    50 AATTATATTTATAAGAGGAAAATTCGGTAATGATGTCGGGGTTGAGGGAT

a score=219 mismap=1e-10
s chrM 4635 46 - 16571 AGTGATATTTGATCAGGAGAACGTGGTTACTAGCACAGAGAGTTCT
s 74/2    4 46 -    50 AGTGATATTTGATTAGGAGAATGTGGTTATTAGTATAGAGAGTTTT

a score=246 mismap=1e-10
s chrM 11671 50 - 16571 GGTATATGATTGAGATGGGGGCTAGTTTTTGTCATGTGAGAAGAAGCAGG
s 75/1     0 50 +    50 GGTATATGATTGAGATGGGGGTTAGTTTTTGTTATGTGAGAAGAAGTAGG

a score=207 mismap=1.54e-10
s chrM 11939 50 - 16571 TTCTGTGGAACGAGGGTTTATTTTTTTGGTTAGAACTGGAATAAAAGCTA
s 75/2     0 50 -    50 TTTTGTGGAATGAGGTTTTATTTTTTTGGTTAGAATTGGAATAAAAGTTA

a score=201 mismap=2.28e-10
s chrM 9146 50 + 16571 CCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCAC
s 76/1    0 50 +    50 TTTTAATTTAAGTTTATGTTTTTATATTTTTAGTAAGTTTTTATTTGTAT

a score=222 mismap=1e-10
s chrM 9356 50 + 16571 CACACTAACCATATACCAATGGTGGCGCGATGTAACACGAGAAAGCACAT
s 76/2    0 50 -    50 TATATTAATTATATATTAATGATGGCGCGATGTAATACGAGAAAGTATAT

a score=228 mismap=1e-10
s chrM 2359 50 + 16571 ACTGAACTGACAATTAACAGCCCAATATCTACAATCAACCAACAAGTCAT
s 77/1    0 50 +    50 ATTGAATTGATAATTAATAGTTTAATATTTATAATTAATTAATAAGTTAT

a score=195 mismap=4.73e-10
s chrM 2629 45 + 16571 TATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCA
s 77/2    5 45 -    50 TATGAATGGTTTTACGAGGGTTTAGTTGTTTTTTATTTTTAATTA

a score=252 mismap=1e-10
s chrM 11052 50 - 16571 AATTTCTATAAGATTATTAGTATAAAAGGGGAGATAGGTAGGAGTAGCGT
s 78/1     0 50 +    50 AATTTTTATAAGATTATTAGTATAAAAGGGGAGATAGGTAGGAGTAGCGT

a score=240 mismap=1e-10
s chrM 11296 50 - 16571 CTTCGATAATGGCCCATTTGGGCAAAAAGCCGGTTAGCGGGGGCAGGCCT
s 78/2     0 50 -    50 TTTCGATAATGGTTTATTTGGGTAAAAAGTCGGTTAGTGGGGGTAGGTTT

a score=219 mismap=1e-10
s chrM 7711 50 + 16571 TTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTC
s 79/1    0 50 +    50 TTTTTTAATATTTATAATAAAATTAATTAATATTAATATTTTAGACGTTT

a score=240 mismap=1e-10
s chrM 7881 50 + 16571 CAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGA
s 79/2    0 50 -    50 TAATTGGTTATTAATGGTATTGAATTTACGAGTATATCGATTACGGTGGA

a score=219 mismap=1e-10
s chrM 13627 50 - 16571 GCTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAAT
s 80/1     0 50 +    50 GTTGTTATTTTTAGGGTAATTTGTTTCGTTGGTTAAGTTATTGGATTAAT

a score=240 mismap=1e-10
s chrM 10541 50 - 16571 GCCCAGCTCGGCTCGAATAAGGAGGCTTAGAGCTGTGCCTAGGACTCCAG
s 81/1     0 50 +    50 GTTTAGTTCGGTTCGAATAAGGAGGCTTAGAGTTGTGTTTAGGATTTTAG

a score=231 mismap=1e-10
s chrM 10765 50 - 16571 TTGAATTGCAAATTCGAAGAAGCAGCTTCAAACCTGCCGGGGCTTCTCCC
s 81/2     0 50 -    50 TTGAATTGTAAATTCGAAGAAGTAGTTTTAAATTTGTCGGGGTTTTTTTC

a score=213 mismap=1.05e-10
s chrM 14590 50 - 16571 ATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGCTG
s 82/1     0 50 +    50 ATAAATTTTTTTATTATTTTGTTATATAGACGGGTGTGTTTTTTTAGTTG

a score=201 mismap=2.54e-10
s chrM 14692 50 - 16571 AAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTT
s 82/2     0 50 -    50 AAGTTATTTTTAGTTAATTTATTTTGTAGAAGGTATAGGGGTTAGTTTTT

a score=219 mismap=1e-10
s chrM 16192 50 + 16571 cccATGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCA
s 83/1     0 50 +    50 TTTATGTTTATAAGTAAGTATAGTAATTAATTTTTAATTATTATATATTA

a score=219 mismap=1e-10
s chrM 16416 50 + 16571 AAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAA
s 83/2     0 50 -    50 AAATTAATATTTTGTATAAGAGTGTTATTTTTTTTGTTTCGGGTTTATAA

a score=258 mismap=1e-10
s chrM 6290 50 - 16571 GGGTAAAAGGAGGGCAATTTCTAGATCAAATAATAAGAAGGTAATAGCTA
s 84/1    0 50 +    50 GGGTAAAAGGAGGGTAATTTTTAGATTAAATAATAAGAAGGTAATAGCTA

a score=204 mismap=1.43e-10
s chrM 8757 50 + 16571 TTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACAC
s 85/1    0 50 +    50 TTTTATTGCTATAATTAATTTTTTCGGATTTTTGCTTTATTTATTTATAT

a score=216 mismap=1.12e-10
s chrM 9048 50 + 16571 TGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTA
s 85/2    0 50 -    50 TGGAAGCGTTATTTTAGTAATATTAATCATTAATTTTTTTTTTATATTTA

a score=234 mismap=1e-10
s chrM 4639 50 - 16571 ATATTTGATCAGGAGAACGTGGTTACTAGCACAGAGAGTTCTCCCAGTAG
s 86/1    0 50 +    50 ATATTTGATTAGGAGAATGTGGTTATTAGTATAGAGAGTTTTTTTAGTAG

a score=255 mismap=1e-10
s chrM 4837 50 - 16571 AATGAGGATGTGAGTCCGTGGGCGATTATGAGAATGACTGCGCCGGTGAA
s 86/2    0 50 -    50 AATGAGGATGTGAGTTCGTGGGCGATTATGAGAATGATTGTGTCGGTGAA

a score=249 mismap=1e-10
s chrM 7991 50 - 16571 GGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGCGAACAGATTTTCGTT
s 87/1    0 50 +    50 GGTAGGTTTAGGATTGTGGGGGTAATGAATGAAGCGAATAGATTTTCGTT

a score=222 mismap=1e-10
s chrM 8193 50 - 16571 TAGTTGGGGCATTTCACTGTAAAGAGGTGTTGGTTCTCTTAATCTTTAAC
s 87/2    0 50 -    50 TAGTTGGGGTATTTTATTGTAAAGAGGTGTTGGTTCTTTTAATTTTTAAT

a score=219 mismap=1e-10
s chrM 12530 50 + 16571 ACTGACACTGAGCCACAACCCAAACAACCCAGCTCTCCCTAAGCTTCAAA
s 88/1     0 50 +    50 ATTGATATTGAGTTATAATTTAAATAATTTAGTTTTTTTTAAGTTTTAAA

a score=234 mismap=1e-10
s chrM 12734 50 + 16571 CCGCTAACAACCTATTCCAACTGTTCATCGGCTGAGAGGGCGTAGGAATT
s 88/2     0 50 -    50 TCGTTAATAATTTATTTTAATTGTTTATCGGTTGAGAGGGCGTAGGAATT

a score=249 mismap=1e-10
s chrM 1543 50 + 16571 TTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAaagtgcac
s 89/1    0 50 +    50 TTATATAGAGGAGATAAGTCGTAATATGGTAAGTGTATTGGAAAGTGTAT

a score=213 mismap=1.2e-10
s chrM 1820 46 + 16571 TAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAA
s 89/2    0 46 -    50 TAATATAGTAAGGATTAATTTTTATATCTTCTGTATAATGAATTAA

a score=201 mismap=2.52e-10
s chrM 10683 46 + 16571 GCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCC
s 90/1     0 46 +    50 GCGGTGGGTTTAGTTTTATTAGTTTTAATTTTTAATATATATGGTT

a score=213 mismap=1e-10
s chrM 10826 50 + 16571 ATTTGAATCAACACAACCACCCACAGCCTAATTATTAGcatcatccccct
s 90/2     0 50 -    50 ATTTGAATTAATATAATTATTTACAGTTTAATTATTAGTATTATTTTTTT

a score=243 mismap=1e-10
s chrM 12107 50 - 16571 GGGAAGGGTATAACCAACATTTTCGGGGTATGGGCCCGATAGCTTATTTA
s 91/1     0 50 +    50 GGGAAGGGTATAATCAATATTTTCGGGGTATGGGTTCGATAGTTTATTTA

a score=231 mismap=1e-10
s chrM 12280 50 - 16571 AAGTAACTCTTTTATCAGACATATTTCTTAGGTTTGAGGGGGAATGCTGG
s 91/2     0 50 -    50 AAGTAATTTTTTTATTAGATATATTTCTTAGGTTTGAGGGGGAATGTTGG

a score=204 mismap=2.31e-10
s chrM 12676 50 + 16571 ATTAATCAGTTCTTCAAATATCTACTCATTTTCCTAATTACCATACTAAT
s 92/1     0 50 +    50 ATTAATTAGTTTTTTAAATATTTATTTATTTTTTTAATTATTATATTAAT

a score=231 mismap=1e-10
s chrM 12835 50 + 16571 GCAGCCATTCAAGCAGTCCTATACAACCGTATCGGCGATATCGGTTTCAT
s 92/2     0 50 -    50 GTAGTTATTTAAGTAGTTTTATATAATCGTATCGGCGATATCGGTTTTAT

a score=240 mismap=1e-10
s chrM 5793 50 + 16571 ATTTGCAATTCAATATGAAAATCACCTCGGAGCTGGTAAAAAGAGGCCTA
s 93/1    0 50 +    50 ATTTGTAATTTAATATGAAAATTATTTCGGAGTTGGTAAAAAGAGGTTTA

a score=189 mismap=1.49e-09
s chrM 5979 47 + 16571 GCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCT
s 93/2    3 47 -    50 GTTGGAGTTTTAGGTATAGTCTTAAGTTTTTTTATTCGAGTCGAGTT

a score=231 mismap=1e-10
s chrM 5027 50 + 16571 CATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTC
s 94/1    0 50 +    50 TATAGGATGAATAATAGTAGTTTTATCGTATAATTTTAATATAACTATTT

a score=210 mismap=1.4e-10
s chrM 5166 50 + 16571 ACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCT
s 94/2    0 50 -    50 ATTTGAAATAAGTTAATATGATTAATATTTTTAATTTTATTTATTTTTTT

a score=234 mismap=1e-10
s chrM 9235 50 - 16571 AAGCGAAGGCTTCTCAAATCATGAAAattattaatattactgCTGTTAGA
s 95/1    0 50 +    50 AAGCGAAGGTTTTTTAAATTATGAAAATTATTAATATTATTGTTGTTAGA

a score=249 mismap=1e-10
s chrM 9381 50 - 16571 TGTTGTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATG
s 95/2    0 50 -    50 TGTTGTGGGAAGAAAGTTAGATTTATGTCGATGAATATGATAGTGAAATG

a score=210 mismap=1.77e-10
s chrM 13602 50 + 16571 TAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCTTCCCCA
s 96/1     0 50 +    50 TAGTATTTGAATAATTTTTTTTATTTTAATAGGTTAATTTCGTTTTTCTA

a score=201 mismap=2.98e-10
s chrM 13763 50 + 16571 CCCCCTtccaaacaacaatccccCTCTACCTAAAACTCACAGCCCTCGCT
s 96/2     0 50 -    50 TTTTTTTTTAAATAATAATTTTTTTTTATTTAAAATTTATAGTTTTCGTT

a score=207 mismap=1.19e-10
s chrM 15710 50 + 16571 CAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGAAT
s 97/1     0 50 +    50 TAATTATTTTATTGATTTTTAGTCGTAGATTTTTTTATTTTAATTTGAAT

a score=213 mismap=1.36e-10
s chrM 15863 50 + 16571 GAAAACAAAATACTCAAATGGGCCTGTCCTTGTAGTATAAACTAATACAC
s 97/2     0 50 -    50 GAAAATAAAATATTCAACTGGGTTTGTTTTTGTAGTATAAATTAATATAT

a score=240 mismap=1e-10
s chrM 6966 50 - 16571 TTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGG
s 98/1    0 50 +    50 TTTAGGAGTGGGATTTTTAGGGGATTTAGTGGGGTGATGTTTGTTGGGGG

a score=192 mismap=5.47e-10
s chrM 7171 50 - 16571 TTTCTCGTGTTACATCGCGCCACCATTGGTATATGGTTAGTGTGTTGGTT
s 98/2    0 50 -    50 TTTTTCGTGTTTTATTGCGTTATTATTGGTATATGGTTAGTGTGTTGGTT

a score=237 mismap=1e-10
s chrM 1034 50 + 16571 TTTAACATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATA
s 99/1    0 50 +    50 TTTAATATATTTGAATATACAATAGTTAAGATTTAAATTGGGATTAGATA

a score=198 mismap=1.05e-09
s chrM 1164 50 + 16571 CTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGT
s 99/2    0 50 -    50 TTTAAAGGATTTGGCGGTGTTTGATATTTTTTTAGAGGAGTTTGTTTTGT

# Query sequences=200 normal letters=10000

TEST sed s:/2:: bs2.fastq | lastal -2 -Q1 -fTAB /tmp/last-test bs100.fastq -
#
# a=21 b=9 A=21 B=9 e=103 d=66 x=102 y=44 z=102 D=1e+06 E=2.59649e+07
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=0.228526 K=0.433378
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
380	chrM	13913	83	+	16571	0/1	0	83	-	87	83	EG=2.8e-25	E=5.5e-33
266	chrM	1543	84	+	16571	1/1	0	84	+	87	84	EG=5.7e-14	E=2.3e-21
120	chrM	12499	36	+	16571	1/2	3	36	-	50	36	EG=18	E=5.1e-07
130	chrM	12306	35	+	16571	2/1	9	35	+	87	35	EG=1.8	E=1.2e-07
204	chrM	12455	46	+	16571	3/1	20	46	-	87	46	EG=8.1e-08	E=4.1e-15
240	chrM	5743	72	+	16571	4/1	6	72	+	87	72	EG=2.2e-11	E=9.7e-19
156	chrM	11	50	+	16571	4/2	0	50	+	50	50	EG=0.0047	E=1.1e-10
152	chrM	6086	80	+	16571	5/1	0	80	-	87	80	EG=0.012	E=7.1e-10
220	chrM	8903	47	+	16571	6/2	3	47	+	50	47	EG=2.1e-09	E=2.3e-17
254	chrM	143	77	+	16571	7/1	2	77	-	87	77	EG=8.9e-13	E=3.7e-20
166	chrM	12726	38	+	16571	7/2	0	38	+	50	38	EG=0.00048	E=9.9e-12
115	chrM	5028	65	+	16571	8/1	22	65	+	87	65	EG=55	E=3.7e-06
253	chrM	14024	50	+	16571	9/2	0	50	+	50	50	EG=1.1e-12	E=6e-21
109	chrM	1040	44	+	16571	10/2	0	44	-	50	44	EG=2.2e+02	E=6.7e-06
166	chrM	16001	32	+	16571	11/1	4	32	-	87	32	EG=0.00048	E=2.8e-11
156	chrM	16050	34	+	16571	11/1	53	34	-	87	34	EG=0.0047	E=2.8e-10
180	chrM	3825	46	+	16571	12/2	4	46	+	50	46	EG=2e-05	E=3.6e-13
187	chrM	1368	43	+	16571	13/1	0	43	-	87	43	EG=4e-06	E=2.1e-13
202	chrM	13997	49	+	16571	13/2	1	49	+	50	49	EG=1.3e-07	E=1.8e-15
269	chrM	6791	76	+	16571	14/1	11	76	-	87	76	EG=2.9e-14	E=1.1e-21
210	chrM	4992	39	+	16571	14/2	2	39	+	50	39	EG=2.1e-08	E=2.7e-16
194	chrM	2765	47	+	16571	15/2	0	47	+	50	47	EG=8e-07	E=1.3e-14
311	chrM	360	87	+	16571	16/1	0	87	-	87	87	EG=1.9e-18	E=6.2e-26
126	chrM	187	33	+	16571	16/2	2	33	+	50	33	EG=4.5	E=1.2e-07
226	chrM	5164	50	+	16571	18/2	0	50	+	50	50	EG=5.3e-10	E=5.4e-18
154	chrM	7826	50	+	16571	19/2	0	50	+	50	50	EG=0.0075	E=1.7e-10
104	chrM	5900	27	+	16571	20/1	41	27	+	87	27	EG=6.8e+02	E=4.7e-05
207	chrM	4452	50	+	16571	20/2	0	50	+	50	50	EG=4.1e-08	E=5.5e-16
146	chrM	80	83	+	16571	21/1	0	83	+	87	83	EG=0.046	E=2.8e-09
187	chrM	15085	63	+	16571	22/1	8	63	-	87	63	EG=4e-06	E=2.1e-13
215	chrM	3180	44	+	16571	23/1	4	44	-	87	44	EG=6.6e-09	E=3.2e-16
115	chrM	10108	51	+	16571	24/1	27	51	+	87	51	EG=55	E=3.7e-06
156	chrM	607	46	+	16571	24/2	0	46	+	50	46	EG=0.0047	E=1.1e-10
199	chrM	9554	49	+	16571	25/2	1	49	+	50	49	EG=2.5e-07	E=3.8e-15
240	chrM	3458	48	+	16571	26/2	2	48	+	50	48	EG=2.2e-11	E=1.7e-19
168	chrM	919	36	+	16571	28/1	1	36	+	87	36	EG=0.0003	E=1.7e-11
114	chrM	2800	35	+	16571	31/1	6	35	+	87	35	EG=70	E=4.7e-06
206	chrM	15963	50	+	16571	31/2	0	50	+	50	50	EG=5.1e-08	E=7e-16
106	chrM	12862	20	+	16571	33/1	5	20	+	87	20	EG=4.3e+02	E=3e-05
355	chrM	3260	87	+	16571	34/1	0	87	-	87	87	EG=8.4e-23	E=2e-30
300	chrM	459	50	+	16571	34/2	0	50	+	50	50	EG=2.4e-17	E=9.6e-27
150	chrM	15318	49	+	16571	35/2	1	49	+	50	49	EG=0.019	E=4.4e-10
122	chrM	14494	25	+	16571	36/1	35	25	+	87	25	EG=11	E=7.3e-07
176	chrM	9030	50	+	16571	36/2	0	50	+	50	50	EG=4.9e-05	E=9.2e-13
145	chrM	3669	36	+	16571	38/1	43	36	-	87	36	EG=0.058	E=3.6e-09
205	chrM	10700	50	+	16571	39/2	0	50	+	50	50	EG=6.5e-08	E=8.9e-16
165	chrM	10215	52	+	16571	41/1	22	52	+	87	52	EG=0.0006	E=3.5e-11
117	chrM	2008	36	+	16571	41/2	6	36	-	50	36	EG=35	E=1e-06
110	chrM	5520	82	+	16571	42/1	0	82	+	87	82	EG=1.7e+02	E=1.2e-05
245	chrM	14309	47	+	16571	43/1	40	47	-	87	47	EG=6.9e-12	E=3e-19
281	chrM	14777	47	+	16571	43/2	0	47	+	50	47	EG=1.9e-15	E=2.9e-24
125	chrM	6505	31	+	16571	44/1	56	31	-	87	31	EG=5.6	E=3.7e-07
154	chrM	3288	27	+	16571	44/2	0	27	+	50	27	EG=0.0075	E=1.7e-10
279	chrM	9716	71	+	16571	45/1	14	71	-	87	71	EG=2.9e-15	E=1.1e-22
215	chrM	130	50	+	16571	47/2	0	50	+	50	50	EG=6.6e-09	E=7.9e-17
156	chrM	207	50	+	16571	48/2	0	50	+	50	50	EG=0.0047	E=1.1e-10
126	chrM	14494	25	+	16571	53/1	36	25	+	87	25	EG=4.5	E=2.9e-07
390	chrM	6396	81	+	16571	54/1	0	81	-	87	81	EG=2.8e-26	E=5.1e-34
253	chrM	48	73	+	16571	55/1	12	73	+	87	73	EG=1.1e-12	E=4.7e-20
156	chrM	13027	50	+	16571	55/2	0	50	+	50	50	EG=0.0047	E=1.1e-10
324	chrM	9569	86	+	16571	56/1	0	86	-	87	86	EG=1e-19	E=3e-27
150	chrM	1398	31	+	16571	57/2	19	31	-	50	31	EG=0.019	E=4.4e-10
330	chrM	12839	80	+	16571	58/1	7	80	-	87	80	EG=2.5e-20	E=7.3e-28
120	chrM	8489	20	+	16571	58/2	15	20	-	50	20	EG=18	E=5.1e-07
122	chrM	9954	45	+	16571	59/1	42	45	-	87	45	EG=11	E=7.3e-07
157	chrM	10691	34	+	16571	59/2	16	34	+	50	34	EG=0.0038	E=8.4e-11
337	chrM	12614	87	+	16571	60/1	0	87	-	87	87	EG=5.1e-21	E=1.4e-28
224	chrM	6412	48	+	16571	60/2	0	48	+	50	48	EG=8.4e-10	E=8.8e-18
200	chrM	11765	50	+	16571	63/2	0	50	+	50	50	EG=2e-07	E=3e-15
198	chrM	12879	44	+	16571	64/2	3	44	+	50	44	EG=3.2e-07	E=4.8e-15
167	chrM	1767	46	+	16571	65/2	2	46	-	50	46	EG=0.00038	E=7.8e-12
114	chrM	14958	25	+	16571	66/1	37	25	+	87	25	EG=70	E=4.7e-06
224	chrM	9521	86	+	16571	67/1	1	86	-	87	86	EG=8.4e-10	E=4e-17
127	chrM	15906	43	+	16571	67/2	0	43	+	50	43	EG=3.6	E=9.8e-08
368	chrM	15820	87	+	16571	68/1	0	87	-	87	87	EG=4.3e-24	E=9.4e-32
111	chrM	1157	41	+	16571	69/2	2	41	+	50	41	EG=1.4e+02	E=4.2e-06
132	chrM	5596	34	+	16571	71/2	16	34	+	50	34	EG=1.1	E=3e-08
330	chrM	14613	71	+	16571	73/1	16	71	-	87	71	EG=2.5e-20	E=7.3e-28
113	chrM	3936	42	+	16571	73/2	8	42	+	50	42	EG=87	E=2.6e-06
170	chrM	4237	68	+	16571	74/1	19	68	-	87	68	EG=0.00019	E=1.1e-11
153	chrM	11892	48	+	16571	74/2	2	48	+	50	48	EG=0.0094	E=2.2e-10
360	chrM	6364	82	+	16571	75/1	3	82	-	87	82	EG=2.7e-23	E=6.2e-31
199	chrM	4585	44	+	16571	75/2	3	44	+	50	44	EG=2.5e-07	E=3.8e-15
133	chrM	9373	28	+	16571	76/2	17	28	-	50	28	EG=0.91	E=2.4e-08
391	chrM	10777	86	+	16571	77/1	0	86	-	87	86	EG=2.2e-26	E=4e-34
107	chrM	5232	42	+	16571	78/2	7	42	+	50	42	EG=3.4e+02	E=1.1e-05
112	chrM	5784	22	+	16571	81/2	28	22	+	50	22	EG=1.1e+02	E=3.3e-06
329	chrM	9716	84	+	16571	82/1	3	84	-	87	84	EG=3.2e-20	E=9.2e-28
193	chrM	1833	46	+	16571	82/2	4	46	+	50	46	EG=1e-06	E=1.6e-14
143	chrM	1726	87	+	16571	83/1	0	87	-	87	87	EG=0.092	E=5.7e-09
108	chrM	8491	18	+	16571	83/1	69	18	-	87	18	EG=2.7e+02	E=1.9e-05
290	chrM	9191	73	+	16571	86/1	3	73	-	87	73	EG=2.4e-16	E=8.5e-24
203	chrM	11684	50	+	16571	86/2	0	50	+	50	50	EG=1e-07	E=1.4e-15
175	chrM	8329	49	+	16571	87/2	1	49	+	50	49	EG=6.1e-05	E=1.2e-12
126	chrM	12755	29	+	16571	88/2	21	29	-	50	29	EG=4.5	E=1.2e-07
107	chrM	1842	28	+	16571	89/2	22	28	-	50	28	EG=3.4e+02	E=1.1e-05
211	chrM	1613	51	+	16571	90/1	36	51	-	87	51	EG=1.6e-08	E=8.2e-16
391	chrM	3741	83	+	16571	91/1	0	83	-	87	83	EG=2.2e-26	E=4e-34
183	chrM	4245	46	+	16571	91/2	4	46	+	50	46	EG=9.9e-06	E=1.7e-13
120	chrM	12862	20	+	16571	92/2	27	20	-	50	20	EG=18	E=5.1e-07
221	chrM	3782	49	+	16571	93/1	38	49	-	87	49	EG=1.7e-09	E=8e-17
251	chrM	7140	50	+	16571	95/2	0	50	+	50	50	EG=1.8e-12	E=1e-20
115	chrM	575	59	+	16571	97/1	6	59	+	87	59	EG=55	E=3.7e-06
106	chrM	15863	47	+	16571	97/2	0	47	-	50	47	EG=4.3e+02	E=1.4e-05
183	chrM	6923	86	+	16571	98/1	1	86	-	87	86	EG=9.9e-06	E=5.4e-13
154	chrM	9350	26	+	16571	98/2	0	26	+	50	26	EG=0.0075	E=1.7e-10
249	chrM	8940	85	+	16571	99/1	1	85	-	87	85	EG=2.8e-12	E=1.2e-19
# Query sequences=200 normal letters=13700

TEST lastal -Q1 --split-d=RF /tmp/last-test bs1.fastq bs2.fastq
#
# a=21 b=9 A=21 B=9 e=103 d=66 x=102 y=44 z=102 D=1e+06 E=2.59649e+07
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=0.228526 K=0.433378
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# m=1 s=123 d=RF c=0.004 t=1e-05 M=7 S=1.7
# trans=-96
# cismax=99122
# GT=12 GC=-5 AT=-12 NN=-15
# AG=12 AC=-12 NN=-15
#
a score=132 mismap=1e-10
s chrM 207 38 + 16571 TTAATtaattaaTGCTTGTAGGACATAATAATAACAAT
s 4/1   12 38 -    50 TtaattaattaatACTTATAAAACATAAtaatAACAAT
q 4/1                 CA5E?EEDAEE>@DC<EEEEE?EEEEBEEFFFFDFFEE

a score=156 mismap=1e-10
s chrM 11 50 + 16571 TATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTC
s 4/2   0 50 +    50 TATCACCCTATTAACCACTCACGAAAACTCTCCATACATTTAATATTTTC
q 4/2                ?BCC@?CCBCC@CBCACCCCCCCC@ABCCAABBCCBC@A=B@CBCACCC@

a score=180 mismap=1e-10
s chrM 9112 50 + 16571 CTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTA
s 6/1     0 50 -    50 CTAATTCTACTAACTATCCTAAAAATCGCTATCACCTTAATCCAAACCTA
q 6/1                  FFFDFECECEBCDCA:FAEFDCBD:EEBEAAECCEGGGGCFCDCFGFGGG

a score=220 mismap=1e-10
s chrM 8903 47 + 16571 CCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTA
s 6/2     3 47 +    50 CCCACTTCTTACCACAAAACACACCTACACCCCTTATCCCCCTACTA
q 6/2                  ?C<@BA;5AB:AB@B?B<AB>A<AB:@AB9;=@AA43A>@;,5=@@A

a score=166 mismap=1e-10
s chrM 12726 38 + 16571 CTTAGTTACCGCTAACAACCTATTCCAACTGTTCATCG
s 7/2      0 38 +    50 CTTAATTACCACTAACAACCTATTCCAACTATTCATCG
q 7/2                   BCC@>CCBCBBCBCBB;B?6,:>@?BB<?:+4>89ABB

a score=180 mismap=1e-10
s chrM 14235 50 + 16571 CATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCC
s 9/1      0 50 -    50 CATACAAAACCCCCACACCAATAAAATCCTCCCGAATCAACCCTAACCCC
q 9/1                   FFFFFFFFFFFFFFFDFFFFEEEEEDEFFFFBFFFEEECDFFFFFFFBEF

a score=253 mismap=1e-10
s chrM 14024 50 + 16571 CTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACC
s 9/2      0 50 +    50 CTAAAACAATTTCACAACACCAAAGCTCCACCTCCATCATCACCTCAACC
q 9/2                   B=9=B+BBBB>BBB=:BB@;<@@B:<A4@?A:?=BABAAAA>>@<A>@AA

a score=180 mismap=1e-10
s chrM 3825 46 + 16571 ATTACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCC
s 12/2    4 46 +    50 ATTACTCCTACCATCATAACCCTTAGCCATAATATAATTTATCTCC
q 12/2                 CCCCCCCC=CCCCCCCCCCC?BCCCCC??>CBCCCCCCCCBCCCCB

a score=252 mismap=1e-10
s chrM 14182 50 + 16571 TACACCAACAAACAATGTTCAACCAGTAACCACTACTAATCAACGCCCAT
s 13/1     0 50 -    50 TACACCAACAAACAATATTCAACCAATAACCACTACTAATCAACGCCCAT
q 13/1                  D=D?BCDBBDCDCAEEE?DEFFFFFCCCC?CCCC6EEBEDDDDFFFDDFD

a score=202 mismap=1e-10
s chrM 13997 49 + 16571 ACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCA
s 13/2     1 49 +    50 ACCTAACCTAACTAAAAAAACTATTACCTAAAACAATTTCACAACACCA
q 13/2                  @BBAB?ACBA@@BAA>ABAB:>AA@9?@AA9=@BB;@>@A8><2?99A@

a score=210 mismap=1e-10
s chrM 4992 39 + 16571 CTACGCAAAATCTTAGCATACTCCTCAATTACCCACATA
s 14/2    2 39 +    50 CTACGCAAAATCTTAACATACTCCTCAATTACCCACATA
q 14/2                 CACCC<BBA5=CCCCCB><ACBC@C+BCBBBCC<@B9BB

a score=194 mismap=1e-10
s chrM 2765 47 + 16571 AACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCG
s 15/2    0 47 +    50 AACAGACCCACAAATCCTAAACTACCAAACCTACATTAAAAATTTCG
q 15/2                 2@1>(?@)@C>(>CCC>)@1:15=>9@=ACCC@>A?*=B?8,>4@BC

a score=228 mismap=1e-10
s chrM 349 50 + 16571 CCAAACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAA
s 16/1   0 50 -    50 CCAaaccccaaaaacaaaaaacccTAACACCAACCTAACCAAATTTCAAA
q 16/1                GGGGFGGGGGEBGGGFGGGGCFFDFGGFGGEGGFEGGGGEGGFGGGDFFB

a score=126 mismap=1e-10
s chrM 187 33 + 16571 AACATACCTACTAAAGTGTGTTAATtaattaaT
s 16/2   2 33 +    50 AACATACCTACTAAAATAtattaattaattaat
q 16/2                ?BBBB@B@BB@BBAA?BA:?@B<<?AA>??@@C

a score=126 mismap=1e-10
s chrM 4976 25 + 16571 ATTAAACCAAACCCAGCTACGCAAA
s 17/1   25 25 -    50 attaaaCCAaaCCCAACTACGCAAA
q 17/1                 FFFFFFDFFF=EEEDEAEEEEFFFE

a score=204 mismap=1e-10
s chrM 5387 50 + 16571 CATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCA
s 18/1    0 50 -    50 CATATCCAACAACGTAAAAATAAAATAacaatTtaaACATACAAAACCCA
q 18/1                 DDCDDFDEEEGEFFFGGFGGGGGGGFFFEEEEGGFGGGBGDGGGGGGGGG

a score=226 mismap=1e-10
s chrM 5164 50 + 16571 GCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTC
s 18/2    0 50 +    50 GCACCTAAAACAAACTAACATAACTAACACCCTTAATTCCATCCACCCTC
q 18/2                 (>CCCCCCBCC=ABCBB=ACCBC3*@B@C=9CBC,CA=-C@CB=CA>9?/

a score=174 mismap=1e-10
s chrM 8013 41 + 16571 TACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCA
s 19/1    9 41 -    50 TACTCCCAATTAAAACCCCCATTCGTATAATAATTACATCA
q 19/1                 FGGFGFGFGGGFCGFGFGGGGDGGGGFGGGGDGGGAGFGFF

a score=154 mismap=1e-10
s chrM 7826 50 + 16571 CTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCAT
s 19/2    0 50 +    50 CTACACATACTTTACATAACAAACGAAATCAAGAATCCCTCCCTTACCAT
q 19/2                 =@9@B>C<';>)*8?'>67@1;(?<;A<@:@@(9A@@)(38>9+@<8?6@

a score=210 mismap=1e-10
s chrM 4644 47 + 16571 TATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTAT
s 20/1    3 47 -    50 TATTTCCTCACGCAAACAACCACATCCATAATCCTTCTAATAACTAT
q 20/1                 FFF?FFF?EEFFEFFFFEEDEEEEDEEEEEDEEEEE5FFFFFGDGGD

a score=207 mismap=1e-10
s chrM 4452 50 + 16571 TATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTC
s 20/2    0 50 +    50 TATACCCTTCCCGTACTAATTAGTCCCCTAACCCAACCCACCATCTACTC
q 20/2                 )@,27@CBC:1?>C?-2AA?59'<)?B7A46)@>:*?8,5)<24?)5>?;

a score=156 mismap=1e-10
s chrM 6518 30 + 16571 CATCACTATACTACTAACAGACCGCAACCT
s 23/1   20 30 -    50 CATCACTATACTACTAACAAACCGCAACCT
q 23/1                 EGEGFGGGGGGGGGGGGGEGEGFGGGGGGG

a score=126 mismap=1e-10
s chrM 779 49 + 16571 CTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTA
s 24/1   1 49 -    50 CTCAAAACACTTAACCTAACCACACCCCCACGAAAAACAACAGTAATTA
q 24/1                =CA?EEEEECEBEBEEEEDDDDAD=B?ADFFFDDFFFBFEEEE?FFFFF

a score=156 mismap=1e-10
s chrM 607 46 + 16571 ACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATA
s 24/2   0 46 +    50 ACACTAAAAATATTTAAACGAACTCACATCACCCCATAAACAAATA
q 24/2                BACBCCCACCBCCCCCCCCCACBCCABABACBCCCCCCBBCCCBCB

a score=156 mismap=1e-10
s chrM 9781 50 + 16571 TCTACGGCTCAACATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGTC
s 25/1    0 50 -    50 TCTACGACTCAACATTTTTTATAACCACAAACTTCCACGAACTTCACGTC
q 25/1                 @5CCCBEBEEEAEEBEBEE?GGGGGGGGGGFGGGGGGGGGDGFGGA=FEF

a score=199 mismap=1e-10
s chrM 9554 49 + 16571 GCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCCACTCCTA
s 25/2    1 49 +    50 GCCCCCAACAGACATCACCCCACTAAATCCCCTACAAATCCCACTACTA
q 25/2                 B=BBCCC@25)=CB9B7;BC7>?A4A;5@BA+;6)()1BCA748@)=1?

a score=240 mismap=1e-10
s chrM 3458 48 + 16571 ACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATCTA
s 26/2    2 48 +    50 ACTCCATAAAACTCTTCACCAaaaaacccctaaaaccCGCCACATCTA
q 26/2                 1@'(=CBBABA,AC664*>0?B@.9,BA<:=?>-B6.)*=>0?59;'3

a score=144 mismap=1e-10
s chrM 207 48 + 16571 TTAATtaattaaTGCTTGTAGGACATAATAATAACAATTGAATGTCTG
s 27/1   2 48 -    50 TTAattaattaatACTTATAAAACATAATaataaCAATTAAATATCTG
q 27/1                B=BEEEEE@BE5D@BEBBE?EEEBBE@B:EE?FEEEFEBCB@CBABBD

a score=156 mismap=1e-10
s chrM 16102 50 + 16571 TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACC
s 31/1     0 50 -    50 TACTACCAACCACCATAAATATTATACGATAccataaataCTTAACCACC
q 31/1                  GGGGGGGGGGGGAGGGGGGEFFFFFEFFFFEEEEEEEEEDEEEEEECEEE

a score=206 mismap=1e-10
s chrM 15963 50 + 16571 AAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAA
s 31/2     0 50 +    50 AAAAATCTTTAACTCCACCATTAACACCCAAAACTAAAATTCTAATTTAA
q 31/2                  BBBB@,AB>B=BB:@>AA8?B<>7@A@?A@A<@@BAA>?.9,9A?A<@?A

a score=132 mismap=1e-10
s chrM 764 46 + 16571 CACGCAGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCAC
s 34/1   0 46 -    50 CACGCAACAATACAACTCAAAACACTTAACCTAACCACACCCCCAC
q 34/1                CEFFFEFFFDDGGGGGGGGFGGGGGEE?FFEEDEEEEC<CGGGGGG

a score=300 mismap=1e-10
s chrM 459 50 + 16571 CCTCCCACTCCCATACTACTAATCTCATCAATACAACCCCCGCCCATCCT
s 34/2   0 50 +    50 CCTCCCACTCCCATACTACTAATCTCATCAATACAACCCCCGCCCATCCT
q 34/2                BCABBBBCBBBCAACB;BCAB@BBBBBCABBA?AB>B@5@B@BA5BCB7?

a score=204 mismap=1e-10
s chrM 15490 50 + 16571 CCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCC
s 35/1     0 50 -    50 CCTCCTAAACGACCCAAACAATTATACCCTAACCAACCCCTTAAACACCC
q 35/1                  AC?C<CEBEE@@?CC:A>C>EEEEEE?=DECC=CADECEEEEEEEDEEEE

a score=150 mismap=1e-10
s chrM 15318 49 + 16571 CCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAA
s 35/2     1 49 +    50 CCCTAACAACACTCCACCTCCTATTCTTACACAAAACGAAATCAAACAA
q 35/2                  BC?CAAB@B=CCCCBBB@B@>@@BBACB?@B@CB@CBACC>A4BBACAA

a score=186 mismap=1e-10
s chrM 9210 43 + 16571 ACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCAT
s 36/1    4 43 -    50 ACCCACCAATCACATACCTATCAtataATAAAACCCAACCCAT
q 36/1                 C@DEEFBD7EEE?FFFEEE:EFFFEE??D?B9EB?D5CEEE?C

a score=176 mismap=1e-10
s chrM 9030 50 + 16571 CCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTA
s 36/2    0 50 +    50 CCTACTCATACACCTAATTAAAAACGCCACCCTAACAATATCAACCATTA
q 36/2                 BB:@@BCB4BBCB?*@A>BB>99BCBBCC>53B<<(>)(<9(87:3B??C

a score=276 mismap=1e-10
s chrM 10929 50 + 16571 CCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTA
s 39/1     0 50 -    50 CCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTAACTCCTA
q 39/1                  ?CBDD3;@4@B>>,>C7@>>.?=BB>7?4@C8>C3EFFFFFFFFFFDFFF

a score=205 mismap=1e-10
s chrM 10700 50 + 16571 ACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAA
s 39/2     0 50 +    50 ACTAATCTCAATCTCCAACACATATGACCTAAACTACATACATAACCTAA
q 39/2                  B?=BBBBB?B@BABBB=@BABBAAA@BBAA>;0===8>=;7.5:<;@@@A

a score=168 mismap=1e-10
s chrM 15071 48 + 16571 TACTCAGAAACCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATA
s 43/1     0 48 -    50 TACTCAAAAACCTAAAACATCGACATTATCCTCCTACTTACAACTATA
q 43/1                  FBGGGFGGGGGEEGGGFGEEGGGEGBDGEFGGFFGGGFGFGGGGGGGG

a score=281 mismap=1e-10
s chrM 14777 47 + 16571 ATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAA
s 43/2     0 47 +    50 ATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAA
q 43/2                  BC@BCCCC=B=BBB@B@A@B?B@B9AAB>>BBBA):B<>??05:?7@

a score=264 mismap=1e-10
s chrM 3543 48 + 16571 CACCATCGCTCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCT
s 44/1    0 48 -    50 CACCATCGCTCTTCTACTATAAACCCCCCTCCCCATACCCAACCCCCT
q 44/1                 FFFFFFDFFDFFFDFDDDD:FFFFEEEBEEEFFFFGGGEGGGFGGGGG

a score=154 mismap=1e-10
s chrM 3288 27 + 16571 AATTCCTCTTCTTAACAACATACCCAT
s 44/2    0 27 +    50 AATTCCTCTTCTTAACAACATACCCAT
q 44/2                 >*>C+3(>:'<CC?B@-7'':0%'@-B

a score=204 mismap=1e-10
s chrM 358 50 + 16571 AAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTT
s 47/1   0 50 -    50 AAAAACAAAAAAGCCTAACACCAACCTAACCAAATTTCAAATTTTATCTT
q 47/1                EE?EEBEEEEBCEEDBEE1EDDEEEEEB6A?=@CC;AAAADDCD@CB;;@

a score=215 mismap=1e-10
s chrM 130 50 + 16571 TCTTTGATTCCTGCCTCATTCTATTATTTATCGCACCTACGTTCAATATT
s 47/2   0 50 +    50 TCTTTAATTCCTACCTCATTCTATTATTTATCGCACCAACATTCAATATT
q 47/2                AC>=ABBAA@CB6BCCB9?BAB=CCB@<B;C<CA@C@,9CCBAB>?=BBA

a score=222 mismap=1e-10
s chrM 419 41 + 16571 CACTTTTAACAGTCACCCCCCAACTAACACATTATTTTCCC
s 48/1   9 41 -    50 CACTTTTAACAATCACCCCCCAACTAACACATTATTTTCCC
q 48/1                GGGGGFGGGGGGGFDGFFGGEGEGGGEEFFFDGDFGGGGEG

a score=156 mismap=1e-10
s chrM 207 50 + 16571 TTAATtaattaaTGCTTGTAGGACATAATAATAACAATTGAATGTCTGCA
s 48/2   0 50 +    50 TTAATTAATTAATACTTATAAAACATAAtaataaCAATTAAATATCTGCA
q 48/2                BCBBB@BBBB@BBB?BB>B?BBBAB@>A?B?<AAAB>B9BAB<@A@>ABA

a score=162 mismap=1e-10
s chrM 1314 27 + 16571 ACGTAAAGACGTTAGGTCAAGGTGTAG
s 53/1    9 27 +    50 ACGTAAAGACGTTAGGTCAAGGTGTAG
q 53/1                 GGGGEEFAFFFEFFFFAFAEFGFGGGF

a score=213 mismap=1e-10
s chrM 13205 46 + 16571 TCTGCGCCCTTACACAAAATGACATCAAAAAAATCGTAGCCTTCTC
s 55/1     4 46 -    50 TCTACGCCCTTACACAAAATAACATCAAAAAAATCATAGCCTTCTC
q 55/1                  0*3(7%:??47@@@B?BCC9EECCB6;EAEEGFGFGGEFFDGGFDG

a score=156 mismap=1e-10
s chrM 13027 50 + 16571 CCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACT
s 55/2     0 50 +    50 CCCTAACTCCCCTCAACCATAAAAAACCCCACCCCAATCTCAGCCCTACT
q 55/2                  BBCBBBBC@C>B@B?@BBBBABAAB?A@B@BB>BBB?AACA@@BABBBBA

a score=150 mismap=1e-10
s chrM 1398 31 + 16571 TTATGAAACTTAAGGGTCGAAGGTGGATTTA
s 57/2   19 31 -    50 TTATGAATTTTAAGGGTCGAAGGTGGATTTA
q 57/2                 B<8(;A='?A5+A@BC@@B@B?>+>;>C=BB

a score=252 mismap=1e-10
s chrM 10892 50 + 16571 ATCAACAACAACCTATTTAGCTGTTCCCCAACCTTTTCCTCCGACCCCCT
s 59/1     0 50 -    50 ATCAACAACAACCTATTTAACTATTCCCCAACCTTTTCCTCCGACCCCCT
q 59/1                  GEGFGDFFFFEBDBEAGGGFFFEFFGFGGGGGGGGDGGGGEGGGFGGGGG

a score=157 mismap=1e-10
s chrM 10691 34 + 16571 CCTAGCCCTACTAGTCTCAATCTCCAACACATAT
s 59/2    16 34 +    50 CCTAACCCTACTAATCTCAATCTCCAACACATAT
q 59/2                  ?A0*:BABB?B?=6><?<BA@5A99>024)?B>A

a score=168 mismap=1e-10
s chrM 6611 40 + 16571 ATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCA
s 60/1    0 40 -    50 ATTTTTCGATCACCCTAAAATTTATATTCTTATCCTACCA
q 60/1                 FFFFDFFGFFGGGFGGGDGGGFGGGEEEEEEGGGGGGEGG

a score=224 mismap=1e-10
s chrM 6412 48 + 16571 ATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCT
s 60/2    0 48 +    50 ATATAAAACCCCCTACCGTAACCCAATACCAAACACCCCTCTTCGTCT
q 60/2                 B>B>=)=(@3:87/;7;(;:B8((:+@<)@7<B@:27(<ABAABAAB@

a score=180 mismap=1e-10
s chrM 4929 30 + 16571 CTCCTCACTCTCTCAATCTTATCCATCATA
s 62/1    0 30 -    50 CTCCTCACTCTCTCAATCTTATCCATCATA
q 62/1                 8>;<>>ACCCBBAC??=B5B:CA@?>=@C@

a score=198 mismap=1e-10
s chrM 11907 41 + 16571 TAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACA
s 63/1     1 41 -    50 TAACCACATTCTCCTAATCAAATATCACTCTCCTACTTACA
q 63/1                  C>?;@CAC:>@@>6?DDCDBD@>@CC@CAB1=;5DD:DDDD

a score=200 mismap=1e-10
s chrM 11765 50 + 16571 CGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACT
s 63/2     0 50 +    50 CGCTCTCCCAATCGCATCATAATCCTCTCTCAAAAAGTTCAAACACTACT
q 63/2                  3)>(<@))@A*<*>(0(94<:0)<+BA:>:7>B8'?%66-?>B5).A6@0

a score=204 mismap=1e-10
s chrM 13054 42 + 16571 CCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTT
s 64/1     0 42 -    50 CCCACCCCAATCTCAGCCCTACTCCACTCAAACACTATAGTT
q 64/1                  GCDDGDF?GDDGDGG@FDGGAFFDGECCE@GDGDFEGDGBFG

a score=198 mismap=1e-10
s chrM 12879 44 + 16571 TTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCAT
s 64/2     3 44 +    50 TTTCATCCTCACCTTAACATAATTTATCCTACACTCCAACTCAT
q 64/2                  CAC@CCACCCC=CCCC0CCCCCCACCCBCCCCCCC@CCBC>C@C

a score=167 mismap=1e-10
s chrM 1767 46 + 16571 TGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAA
s 65/2    2 46 -    50 TGGCGTAACAGATATAGTATTGTAAGGGAAAGATGAAAAATTATAA
q 65/2                 ??@B@<2;+A:B=>BB/CB?BBBB?@A??>BBB<60:>;>B;B;AA

a score=228 mismap=1e-10
s chrM 16146 46 + 16571 ACCACCTGTAGTACATAAAAACCCAACCCACATCAaaccccccccc
s 67/1     4 46 -    50 ACCACCTATAATACATAAAAACCCAACCCACATCAAaccccccccC
q 67/1                  GGGGGFGGGEGGGGGBGGGFGGGGFGGGGGGGGGFGGGGGGFFFFE

a score=127 mismap=1e-10
s chrM 15906 43 + 16571 AATACACCAGTCTTGTAAACCGGAGACGAAAACCTTTTTCCAA
s 67/2     0 43 +    50 AATACACCAATCTCATAAACcaaaaacgaaaacctttttccaa
q 67/2                  A8B<BB;?<B;BB+=B??7>>7A?><A7>@A<<BBB99@BA@B

a score=174 mismap=1e-10
s chrM 1364 37 + 16571 CTACATTTTCTACCCCAGAAAACTACGATAGCCCTTA
s 69/1   13 37 -    50 CTACATTTTCTACCCCAAAAAACTACGATAACCCTTA
q 69/1                 FFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGE

a score=126 mismap=1e-10
s chrM 5784 25 + 16571 CTTCTTCGAATTTGCAATTCAATAT
s 71/1   25 25 -    50 CTTCTTCGAATTTACAATTCAATAT
q 71/1                 DGFEGGGGGGGGFFGEED?AEEBEE

a score=132 mismap=1e-10
s chrM 5596 34 + 16571 CAAAACCCCACTCTGCATCAACTGAACGCAAATC
s 71/2   16 34 +    50 CAAAACCCCACTCTACATCAACTAAACACAAATC
q 71/2                 @BB?BBB@@A>B?A@BBA<BB??BBBBBBBAB@B

a score=258 mismap=1e-10
s chrM 4154 47 + 16571 ACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTA
s 73/1    2 47 -    50 ACCAACTCATACACCTCCTATAAAAAAACTTCCTACCACTCACCCTA
q 73/1                 BCDBBBBDBBDBCBCCCCDDBDBBCCCC0CCCAFFDGBDDDCDDDD?

a score=210 mismap=1e-10
s chrM 12100 47 + 16571 ATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTAAATATA
s 74/1     0 47 -    50 ATCCCTCAACCCCGACATCATTACCGAATTTTCCTCTTATAAATATA
q 74/1                  FGGGGGGGFGGGGEGFGGGGGGF?GGEGFEGGGGGGGGGGGGGGGGE

a score=153 mismap=1e-10
s chrM 11892 48 + 16571 AACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCC
s 74/2     2 48 +    50 AACTCTCTATACTAATAACCACATTCTCCTAATCAAATATCACTGTCC
q 74/2                  C>*3B6)<CBA;=@3AC:B3BBB;A>)@A?CCBBCB:3>)*@B=+??C

a score=228 mismap=1e-10
s chrM 4854 46 + 16571 CTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACC
s 75/1    4 46 -    50 CTTCTTCTCACATAACAAAAACTAACCCCCATCTCAATCATATACC
q 75/1                 GEGGGGCCEBEEDEEAFGBFEFGGDGFGGGEBFGGFGGDDFFFEFF

a score=199 mismap=1e-10
s chrM 4585 44 + 16571 CTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACA
s 75/2    3 44 +    50 CTTTTATTCCAATTCTAACCAAAAAAATAAAACCTCATTCCACA
q 75/2                 ?CA==A=BCBCABAAA9BBBB;@B?B@B@7@.CA9AACBB==.B

a score=133 mismap=1e-10
s chrM 9373 28 + 16571 AATGGTGGCGCGATGTAACACGAGAAAG
s 76/2   17 28 -    50 aatGATGGCGCGATGTAATACGAGAAAG
q 76/2                 @><5'75@4:<@B@@8@<@@>->?=>9B

a score=276 mismap=1e-10
s chrM 5469 50 + 16571 ACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTATAGAAATT
s 78/1    0 50 -    50 ACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTATAAAAATT
q 78/1                 EEEEEE?BAEEBEEEBE:BEEEDDEEE:DBEEEDEEEBEEBEEEEEBDEE

a score=138 mismap=1e-10
s chrM 2898 35 + 16571 ATCCAATAACTTGACCAACGGAACAAGTTACCCTA
s 80/1    4 35 -    50 ATCCAATAACTTAACCAACGAAACAAATTACCCTA
q 80/1                 GGGGGGD@FEEGEGEGGFGGGGGGGGFGGGFGGGG

a score=132 mismap=1e-10
s chrM 5993 30 + 16571 CACAGCTCTAAGCCTCCTTATTCGAGCCGA
s 81/1   13 30 -    50 CACAACTCTAAGCCTCCTTATTCGAACCGA
q 81/1                 EEADEDDEEEEEEEBEEACC?EDDD@A:DE

a score=193 mismap=1e-10
s chrM 1833 46 + 16571 ACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTT
s 82/2    4 46 +    50 ACTAACCCCTATACCTTCTACAAAATAAATTAACTAAAAATAACTT
q 82/2                 B5BCBCBC?CBCBBAA<BAB@4'AC@ABCCBCCBACBA@B@BCB7<

a score=228 mismap=1e-10
s chrM 10231 50 + 16571 TAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCC
s 84/1     0 50 -    50 TAGCTATTACCTTCTTATTATTTAATCTAAAAATTACCCTCCTTTTACCC
q 84/1                  EEEEEEEEEEAEEEEEEEEEDBDB@EEEEEEEEEEEEEE=EEEBEEAE:D

a score=203 mismap=1e-10
s chrM 11684 50 + 16571 TTCACCGGCGCAGTCATTCTCATAATCGCCCACGGACTCACATCCTCATT
s 86/2     0 50 +    50 TTCACCGACACAATCATTCTCATAATCGCCCACGAACTCACATCCTCATT
q 86/2                  ,A;B<1@?BC>48C@B?C9BB.<?BC=:CB=BBC=BAB*):C>=='<CBB

a score=204 mismap=1e-10
s chrM 8530 42 + 16571 AACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTA
s 87/1    0 42 -    50 AACGAAAATCTATTCGCTTCATTCATTACCCCCACAATCCTA
q 87/1                 EGDFEGFGGGGGDGGGFGGGFGGCGGGEGGEFBGGGGFGGGG

a score=175 mismap=1e-10
s chrM 8329 49 + 16571 TTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTA
s 87/2    1 49 +    50 TTAAAAATTAAAAGAACCAACACCTCTTTACAATAAAATACCCCAACTA
q 87/2                 ACC@=BBBC<C=C@BBA@C=AB@BB=?@BB?BBBBABACAA4A?BBB?A

a score=126 mismap=1e-10
s chrM 12755 29 + 16571 TGTTCATCGGCTGAGAGGGCGTAGGAATT
s 88/2    21 29 -    50 TGTTTATCGGTTGAGAGGGCGTAGGAATT
q 88/2                  ABB>CBCBBCC@BCACBCCCCBCCCACCB

a score=210 mismap=1e-10
s chrM 1543 47 + 16571 TTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAaagtg
s 89/1    0 47 +    50 TTATATAGAGGAGATAAGTCGTAATATGGTAAGTGTATTGGAAAGTG
q 89/1                 EEEBEEEEEAFFFFFEGGGGGGGAEGGADGFGFGAGGGGGGGGEGGA

a score=180 mismap=1e-10
s chrM 4414 50 + 16571 TAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTCCC
s 91/1    0 50 -    50 TAAATAAACTATCGAACCCATACCCCGAAAATATTGATTATACCCTTCCC
q 91/1                 BEEEEEEEBEEBECACGGFGFAAFFGDDGEGGDGGEGEGGFGGGFGGGGG

a score=183 mismap=1e-10
s chrM 4245 46 + 16571 CATTCCCCCTCAAACCTAAGAAATATGTCTGATAAAAGAGTTACTT
s 91/2    4 46 +    50 CATTCCCCCTCAAACCTAAGAAATATATCTAATAAAAAAATTACTT
q 91/2                 @6@>7@4:BABBB==B@BBB@(@59A@BAA@B9>B??32B<A<B=;

a score=132 mismap=1e-10
s chrM 5793 46 + 16571 ATTTGCAATTCAATATGAAAATCACCTCGGAGCTGGTAAAAAGAGG
s 93/1    0 46 +    50 ATTTGTAATTTAATATGAAAATTATTTCGGAGTTGGTAAAAAGAGG
q 93/1                 D=FFFECEBDFFFFFFFFFFFFFFFFFFEFFFEFAFEFFFCEBEEF

a score=157 mismap=1e-10
s chrM 7286 50 + 16571 TCTAACAGCAGTAATattaataattttcatgatTTGAGAAGCCTTCGCTT
s 95/1    0 50 -    50 TCTAACAACAAtaatattaataattttcataatttaAAAAACCTTCGCTT
q 95/1                 A06+0@@;>@C:@@@;FFFFGFGGFFFFFFFEFECGGGGGFGFGGGEGGD

a score=251 mismap=1e-10
s chrM 7140 50 + 16571 CATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACA
s 95/2    0 50 +    50 CATTTCACTATCATATTCATCGACATAAATCTAACTTTCTTCCCACAACA
q 95/2                 B@BABA>BB=.=?*@@?2<A?6BA=*?@>>8:?0;=6>@A8?76@7<?@?

a score=180 mismap=1e-10
s chrM 9555 50 + 16571 CCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCCACTCCTAAA
s 98/1    0 50 -    50 CCCCCAACAAACATCACCCCACTAAATCCCCTAAAAATCCCACTCCTAAA
q 98/1                 EDEEBEBCEBFDFEFDGGGGEGGGGFGEGGGBGGGGGGFGGGGGG?EEEE

a score=154 mismap=1e-10
s chrM 9350 26 + 16571 AACCAACACACTAACCATATACCAAT
s 98/2    0 26 +    50 AACCAACACACTAACCATATACCAAT
q 98/2                 9BBBA6=?8*<(;BAB@7B+AA<<A<

# Query sequences=200 normal letters=10000

TEST lastal -r1 -W19 -fTAB /tmp/last-test hg19-M.fa
#
# a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=19 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1107	chrM	6510	2477	+	16775	chrM	5764	2482	+	16571	78,2:0,35,3:0,17,0:8,450,0:3,1085,0:3,67,5:0,57,1:0,19,1:0,152,0:3,505	EG=0	E=0
540	chrM	11243	1829	+	16775	chrM	10518	1821	+	16571	1692,8:0,129	EG=1e-244	E=1.6e-249
538	chrM	4097	1794	+	16775	chrM	3334	1787	+	16571	914,0:2,27,2:0,44,9:0,66,0:3,61,1:0,670	EG=9.2e-244	E=1.4e-248
524	chrM	14904	1124	+	16775	chrM	14756	1124	+	16571	1124	EG=4.2e-237	E=6.6e-242
509	chrM	9353	1389	+	16775	chrM	8638	1389	+	16571	1389	EG=5.9e-230	E=9.1e-235
473	chrM	13197	1385	+	16775	chrM	12461	1388	+	16571	510,0:3,875	EG=8.1e-213	E=1.3e-217
186	chrM	1702	574	+	16775	chrM	1042	564	+	16571	114,2:0,92,4:0,33,1:0,27,1:0,45,0:1,32,0:1,61,6:0,55,0:2,101	EG=3.4e-76	E=5.5e-81
160	chrM	3629	255	+	16775	chrM	2908	255	+	16571	146,1:0,53,0:1,55	EG=8.1e-64	E=1.3e-68
122	chrM	3112	338	+	16775	chrM	2409	334	+	16571	41,0:2,38,1:0,32,2:0,37,3:0,184	EG=1e-45	E=1.6e-50
114	chrM	5978	529	+	16775	chrM	5208	523	+	16571	233,0:3,84,5:0,39,3:0,14,0:1,69,2:0,80	EG=6.4e-42	E=1e-46
108	chrM	1243	356	+	16775	chrM	595	352	+	16571	56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,57,1:0,18	EG=4.6e-39	E=7.5e-44
95	chrM	2432	295	+	16775	chrM	1742	281	+	16571	26,1:0,12,4:0,25,4:0,11,2:0,57,0:1,42,1:0,24,3:0,83	EG=7.1e-33	E=1.2e-37
92	chrM	10825	349	+	16775	chrM	10106	346	+	16571	299,3:0,47	EG=1.9e-31	E=3.1e-36
48	chrM	16456	319	+	16775	chrM	14425	318	+	16571	247,2:0,54,0:1,16	EG=1.7e-10	E=2.8e-15
26	chrM	856	48	+	16775	chrM	198	48	+	16571	48	EG=5	E=8.3e-05
26	chrM	5538	94	+	16775	chrM	12989	94	+	16571	94	EG=5	E=8.3e-05
25	chrM	3973	69	+	16775	chrM	3237	70	+	16571	38,0:1,31	EG=15	E=0.00025
22	chrM	12073	105	+	16775	chrM	12976	102	+	16571	69,3:0,33	EG=4e+02	E=0.0066
24	chrM	6570	28	+	16775	chrM	13264	28	-	16571	28	EG=45	E=0.00074
# Query sequences=1 normal letters=16571

TEST lastal -W1 -M -fTAB /tmp/last-test hg19-M.fa
#
# a=0 b=4 A=0 B=4 e=42 d=23 x=41 y=16 z=41 D=1e+06 E=2.19598e+07
# R=10 u=0 s=2 S=0 M=1 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.57796 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.545793 K=0.198192
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   2  -3  -3  -3   1  -3  -3   1   1  -3  -3   0   0   0
# C  -3   2  -3  -3   1   1  -3  -3  -3   1   0  -3   0   0
# G  -3  -3   2  -3  -3   1   1  -3   1  -3   0   0  -3   0
# T  -3  -3  -3   2  -3  -3   1   1  -3   1   0   0   0  -3
# M   1   1  -3  -3   1   0  -3   0   0   0  -1  -1   0   0
# S  -3   1   1  -3   0   1   0  -3   0   0   0  -1  -1   0
# K  -3  -3   1   1  -3   0   1   0   0   0   0   0  -1  -1
# W   1  -3  -3   1   0  -3   0   1   0   0  -1   0   0  -1
# R   1  -3   1  -3   0   0   0   0   1  -3  -1   0  -1   0
# Y  -3   1  -3   1   0   0   0   0  -3   1   0  -1   0  -1
# B  -3   0   0   0  -1   0   0  -1  -1   0   0   0   0   0
# D   0  -3   0   0  -1  -1   0   0   0  -1   0   0   0   0
# H   0   0  -3   0   0  -1  -1   0  -1   0   0   0   0   0
# V   0   0   0  -3   0   0  -1  -1   0  -1   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1757	chrM	6536	2451	+	16775	chrM	5790	2456	+	16571	27,0:1,2,1:0,21,1:0,1,1:0,14,1:0,3,0:1,15,3:0,19,0:8,61,1:0,3,0:1,71,0:1,2,0:1,2,1:0,2,1:0,105,0:1,4,1:0,70,1:0,2,0:1,79,1:0,4,0:1,34,0:1,5,0:2,21,1:0,2,0:1,48,0:1,2,1:0,48,1:0,2,0:1,15,1:0,7,0:1,387,0:1,6,1:0,292,0:1,4,1:0,52,0:1,2,1:0,51,1:0,2,0:1,58,1:0,4,0:1,5,1:0,3,1:0,3,0:1,1,0:1,59,0:1,2,0:1,1,0:1,23,1:0,4,0:1,23,2:0,6,1:0,2,1:0,2,0:1,3,1:0,4,1:0,17,0:1,3,1:0,7,1:0,4,0:1,5,1:0,3,0:1,10,1:0,19,1:0,5,0:1,6,1:0,11,0:1,2,1:0,93,0:2,4,1:0,4,1:0,23,0:1,1,0:1,1,0:1,182,0:1,11,1:0,286,1:0,2,0:1,20	EG=0	E=0
1264	chrM	11669	2917	+	16775	chrM	10944	2907	+	16571	21,1:0,3,0:1,45,1:0,3,0:1,3,2:0,6,0:2,38,0:1,4,1:0,48,0:1,2,1:0,22,1:0,8,0:1,49,1:0,3,0:1,14,1:0,4,0:1,21,1:0,2,0:1,15,1:0,10,3:0,2,1:0,2,1:0,20,0:1,1,0:1,3,0:2,3,0:1,1,0:1,15,0:2,1,0:2,5,1:0,7,2:0,1,1:0,28,1:0,5,0:1,142,0:1,4,1:0,255,1:0,4,0:1,139,0:2,14,1:0,4,1:0,4,1:0,3,1:0,5,0:2,12,1:0,2,0:1,17,0:1,2,1:0,16,0:2,9,1:0,2,1:0,6,0:1,5,0:1,6,2:0,16,1:0,6,0:1,16,1:0,6,0:1,5,1:0,10,0:1,22,0:1,9,1:0,47,1:0,2,0:1,4,0:2,4,1:0,1,1:0,12,3:0,1,5:0,4,0:1,2,1:0,20,1:0,12,1:0,5,0:1,3,0:1,79,2:0,1,1:0,2,1:0,1,1:0,1,1:0,5,0:1,2,1:0,1,1:0,1,2:0,18,0:1,3,1:0,17,3:0,20,0:1,3,0:1,17,0:2,4,0:1,6,0:1,5,0:3,52,1:0,4,0:1,27,0:1,3,2:0,13,0:1,27,1:0,2,0:1,136,1:0,3,0:1,159,1:0,5,0:1,9,0:1,14,1:0,34,0:1,4,1:0,10,0:1,4,0:2,158,2:0,1,1:0,1,3:0,3,1:0,1,1:0,11,0:2,3,0:1,1,0:1,2,0:1,1,0:1,2,0:1,2,0:1,15,2:0,11,0:1,2,0:1,170,0:1,4,1:0,174,1:0,3,1:0,2,0:1,1,0:1,38,0:1,3,1:0,9,0:1,3,1:0,6,0:1,4,1:0,17,1:0,2,0:1,11,1:0,7,0:1,16,0:1,4,0:1,11,1:0,4,1:0,25,1:0,2,0:1,6,3:0,3,2:0,12,0:2,4,0:1,16,0:1,4,0:1,7,1:0,3,1:0,2,1:0,2,0:1,2,0:1,7,0:1,44,1:0,1,1:0,5	EG=1.6e-287	E=2.4e-292
813	chrM	14883	1145	+	16775	chrM	14737	1143	+	16571	5,0:1,6,1:0,1,1:0,6,1:0,5,0:1,7,1:0,40,0:1,4,1:0,41,0:1,5,1:0,91,1:0,8,0:1,147,0:1,1,0:1,2,1:0,3,1:0,101,0:1,7,1:0,36,0:1,5,1:0,55,1:0,7,0:1,113,1:0,2,0:1,8,0:1,6,1:0,68,1:0,2,0:1,155,0:1,2,1:0,28,1:0,4,0:1,53,1:0,3,0:1,34,0:1,4,1:0,61	EG=1.3e-180	E=2e-185
711	chrM	9633	1385	+	16775	chrM	8918	1381	+	16571	23,0:1,5,1:0,123,0:1,10,2:0,13,1:0,10,0:1,3,0:1,5,0:1,3,1:0,124,0:1,4,1:0,108,1:0,2,0:1,10,1:0,4,0:1,169,0:1,7,1:0,145,1:0,3,0:1,56,1:0,6,0:1,129,0:1,6,1:0,129,1:0,12,1:0,1,1:0,4,0:2,19,0:1,4,0:1,3,1:0,4,1:0,4,0:1,7,1:0,2,3:0,6,1:0,2,1:0,2,0:1,2,0:1,5,1:0,4,0:1,23,0:1,6,1:0,12,1:0,1,1:0,5,0:1,2,0:1,70,0:2,3,1:0,1,1:0,55	EG=2e-156	E=3.1e-161
461	chrM	4084	702	+	16775	chrM	3319	704	+	16571	5,0:2,2,0:1,5,1:0,169,1:0,6,0:1,33,1:0,4,0:1,8,1:0,5,0:1,11,0:1,4,1:0,2,0:1,4,1:0,8,0:1,2,1:0,185,0:1,10,1:0,14,1:0,2,0:1,15,1:0,13,0:1,185	EG=3.6e-97	E=5.9e-102
390	chrM	1707	603	+	16775	chrM	1047	592	+	16571	72,1:0,3,0:1,2,0:1,3,0:1,3,1:0,1,1:0,18,1:0,4,1:0,75,1:0,2,0:1,2,0:1,2,1:0,11,2:0,3,2:0,28,1:0,10,0:1,5,1:0,11,0:1,2,1:0,3,1:0,3,1:0,3,0:1,34,0:1,30,0:1,56,2:0,3,2:0,4,2:0,53,1:0,1,1:0,1,1:0,3,1:0,1,1:0,6,0:2,8,0:2,10,0:1,8,0:1,1,0:1,52,0:1,3,0:1,2,1:0,7,1:0,4,1:0,20	EG=2.5e-80	E=4e-85
331	chrM	5399	1101	+	16775	chrM	4629	1095	+	16571	40,3:0,7,1:0,1,1:0,7,0:1,3,0:1,4,0:1,1,0:2,6,1:0,1,1:0,2,0:1,1,0:1,21,1:0,3,1:0,3,0:1,11,0:1,73,0:1,3,1:0,17,1:0,2,0:1,12,0:1,3,1:0,2,1:0,6,0:1,44,1:0,3,1:0,3,0:2,1,0:1,2,0:1,1,0:1,10,1:0,2,2:0,16,1:0,3,0:1,8,1:0,3,0:1,16,1:0,3,0:1,48,1:0,6,1:0,3,0:1,2,0:1,8,1:0,4,0:1,53,1:0,1,2:0,2,1:0,15,1:0,5,1:0,12,0:1,1,0:1,5,2:0,4,0:1,6,3:0,2,1:0,5,0:1,3,0:1,1,0:1,3,0:2,3,0:1,5,0:2,1,0:1,75,1:0,9,1:0,8,0:2,19,2:0,7,0:2,28,2:0,3,1:0,9,0:3,17,2:0,1,1:0,25,0:1,20,0:1,5,0:2,5,0:2,7,1:0,1,1:0,8,1:0,12,0:1,13,1:0,5,1:0,4,0:1,2,0:2,2,0:1,13,1:0,6,3:0,2,1:0,7,0:1,2,1:0,20,2:0,7,1:0,13,0:1,9,0:1,2,0:2,12,2:0,1,1:0,46,1:0,3,1:0,12,0:1,9,0:1,9,2:0,34	EG=2.4e-66	E=3.9e-71
325	chrM	3617	415	+	16775	chrM	2897	400	+	16571	9,1:0,43,0:1,5,1:0,99,1:0,53,0:1,42,0:1,5,1:0,9,1:0,10,2:0,2,2:0,1,1:0,3,0:1,2,1:0,10,2:0,2,1:0,3,1:0,8,1:0,6,1:0,1,1:0,1,1:0,13,1:0,43,1:0,4,0:3,2,1:0,17	EG=6.4e-65	E=1e-69
242	chrM	2890	560	+	16775	chrM	2171	572	+	16571	25,1:0,9,0:1,2,1:0,6,0:2,1,0:1,4,0:1,1,0:3,14,1:0,6,0:2,2,0:1,3,1:0,5,0:1,22,0:2,35,0:1,4,0:1,6,0:1,1,0:1,1,0:1,1,0:1,1,0:2,8,0:1,1,0:1,3,0:1,5,0:1,2,0:1,1,0:1,3,2:0,9,1:0,1,1:0,15,1:0,9,0:1,6,1:0,3,1:0,4,1:0,1,1:0,27,0:1,3,0:1,6,0:2,8,1:0,1,1:0,21,1:0,26,1:0,2,0:1,3,1:0,3,1:0,31,2:0,3,1:0,87,0:1,3,1:0,10,1:0,2,1:0,4,0:2,38,2:0,3,0:1,4,0:1,28	EG=3e-45	E=4.9e-50
222	chrM	1234	365	+	16775	chrM	585	362	+	16571	9,0:1,9,0:1,3,1:0,24,1:0,2,1:0,2,0:1,1,0:1,12,0:1,34,0:1,4,1:0,28,2:0,5,0:1,3,0:1,5,3:0,15,0:1,3,1:0,11,2:0,8,0:1,1,0:1,13,1:0,3,0:1,4,1:0,20,1:0,52,0:1,60,1:0,18	EG=1.7e-40	E=2.7e-45
212	chrM	2432	326	+	16775	chrM	1742	311	+	16571	18,0:1,3,1:0,1,1:0,16,1:0,1,1:0,1,2:0,19,1:0,2,1:0,1,2:0,10,2:0,55,0:1,28,0:1,4,1:0,7,1:0,2,1:0,2,0:1,24,3:0,66,0:1,2,1:0,14,4:0,3,0:1,2,0:1,1,0:1,21	EG=3.9e-38	E=6.4e-43
208	chrM	4850	400	+	16775	chrM	4087	393	+	16571	24,1:0,6,0:1,117,1:0,3,0:1,9,0:1,5,0:1,5,0:1,4,1:0,12,1:0,5,1:0,23,0:1,3,0:1,4,1:0,3,1:0,1,1:0,3,1:0,1,1:0,1,2:0,2,1:0,3,2:0,2,1:0,3,0:1,8,1:0,11,0:1,6,1:0,2,1:0,3,0:1,21,0:1,13,0:2,50,0:1,2,1:0,3,1:0,21	EG=3.5e-37	E=5.7e-42
138	chrM	11219	296	+	16775	chrM	10493	297	+	16571	6,0:1,7,0:1,3,0:1,3,1:0,3,1:0,34,0:1,2,1:0,15,0:1,2,1:0,21,0:1,7,0:1,3,2:0,2,0:1,6,1:0,2,1:0,7,1:0,8,1:0,7,0:3,9,0:1,4,1:0,27,1:0,5,0:1,21,0:1,5,0:1,2,2:0,9,1:0,2,0:1,59	EG=1.4e-20	E=2.2e-25
82	chrM	9353	216	+	16775	chrM	8638	216	+	16571	110,1:0,3,0:1,4,0:1,9,1:0,25,1:0,3,1:0,3,0:1,1,0:1,44,1:0,5,0:1,4	EG=2.6e-07	E=4.2e-12
57	chrM	16456	319	+	16775	chrM	14425	318	+	16571	84,1:0,3,2:0,2,1:0,6,0:1,13,0:2,5,0:1,2,0:2,8,2:0,13,1:0,9,0:1,3,0:2,8,1:0,3,1:0,4,0:1,2,1:0,19,0:1,13,1:0,4,0:1,21,1:0,15,1:0,1,1:0,12,0:1,8,1:0,3,1:0,9,0:1,17,0:1,16	EG=0.22	E=3.6e-06
42	chrM	5620	47	+	16775	chrM	5336	50	+	16571	3,1:0,4,0:1,3,0:1,2,0:1,2,0:1,8,1:0,8,0:1,15	EG=7.8e+02	E=0.013
42	chrM	9034	64	+	16775	chrM	8312	68	+	16571	24,0:1,7,1:0,6,0:1,6,0:1,1,0:1,1,0:1,18	EG=7.8e+02	E=0.013
46	chrM	6575	23	+	16775	chrM	13269	23	-	16571	23	EG=88	E=0.0015
# Query sequences=1 normal letters=16571

TEST lastal -r1 -fTAB -j4 -A2 -B2 /tmp/last-test hg19-M.fa
#
# a=7 b=1 A=2 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.16774e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=0.910239 j=4 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09024 K=0.30481
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1116	chrM	6510	2477	+	16775	chrM	5764	2482	+	16571	78,2:0,35,3:0,17,0:8,445,0:1,8,0:2,1082,0:3,67,5:0,57,1:0,19,1:0,150,0:2,4,0:1,503	EG=0	E=0	fullScore=1.13e+03
583	chrM	9353	1821	+	16775	chrM	8638	1814	+	16571	432,0:1,10,2:0,28,0:1,934,1:0,21,0:1,26,4:0,313,3:0,47	EG=9.1e-264	E=1.4e-268	fullScore=594
545	chrM	4097	1794	+	16775	chrM	3334	1787	+	16571	914,0:2,27,2:0,26,0:1,13,10:0,70,0:3,61,1:0,670	EG=9e-246	E=1.4e-250	fullScore=558
540	chrM	11243	1829	+	16775	chrM	10518	1821	+	16571	1692,8:0,129	EG=2.1e-243	E=3.2e-248	fullScore=548
524	chrM	14904	1124	+	16775	chrM	14756	1124	+	16571	1124	EG=7.9e-236	E=1.2e-240	fullScore=528
475	chrM	13197	1385	+	16775	chrM	12461	1388	+	16571	510,0:3,875	EG=1.3e-212	E=2e-217	fullScore=490
203	chrM	1702	617	+	16775	chrM	1042	606	+	16571	114,2:0,92,4:0,33,1:0,27,1:0,45,0:1,32,0:1,61,6:0,54,0:1,10,0:1,85,0:1,14,2:0,34	EG=8.1e-84	E=1.3e-88	fullScore=221
164	chrM	3629	255	+	16775	chrM	2908	255	+	16571	146,1:0,53,0:1,55	EG=2.4e-65	E=3.8e-70	fullScore=169
131	chrM	2890	560	+	16775	chrM	2171	572	+	16571	27,0:3,8,0:3,32,0:1,15,0:1,24,0:2,37,0:2,22,0:1,13,0:2,19,0:1,66,0:2,38,1:0,32,2:0,37,3:0,184	EG=1e-49	E=1.6e-54	fullScore=151
120	chrM	5978	529	+	16775	chrM	5208	523	+	16571	233,0:3,84,5:0,39,3:0,14,0:1,69,2:0,80	EG=1.6e-44	E=2.7e-49	fullScore=131
119	chrM	1234	365	+	16775	chrM	585	362	+	16571	9,0:1,56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,57,1:0,18	EG=4.8e-44	E=7.9e-49	fullScore=127
99	chrM	2432	295	+	16775	chrM	1742	281	+	16571	26,1:0,12,4:0,25,4:0,11,2:0,57,0:1,42,1:0,24,3:0,83	EG=1.4e-34	E=2.3e-39	fullScore=110
52	chrM	16456	319	+	16775	chrM	14425	318	+	16571	247,2:0,54,0:1,16	EG=2.6e-12	E=4.2e-17	fullScore=56.1
29	chrM	3973	69	+	16775	chrM	3237	70	+	16571	38,0:1,31	EG=0.2	E=3.3e-06	fullScore=32.3
26	chrM	856	48	+	16775	chrM	198	48	+	16571	48	EG=5.3	E=8.7e-05	fullScore=27.8
26	chrM	5538	94	+	16775	chrM	12989	94	+	16571	94	EG=5.3	E=8.7e-05	fullScore=28.9
24	chrM	3520	38	+	16775	chrM	2807	38	+	16571	38	EG=47	E=0.00077	fullScore=26.9
23	chrM	16128	49	+	16775	chrM	15975	49	+	16571	49	EG=1.4e+02	E=0.0023	fullScore=25
22	chrM	9034	88	+	16775	chrM	8312	92	+	16571	24,0:2,20,0:2,44	EG=4.1e+02	E=0.0069	fullScore=28
22	chrM	12073	105	+	16775	chrM	12976	102	+	16571	69,3:0,33	EG=4.1e+02	E=0.0069	fullScore=24.7
22	chrM	14801	78	+	16775	chrM	14065	78	+	16571	78	EG=4.1e+02	E=0.0069	fullScore=25.8
24	chrM	6570	28	+	16775	chrM	13264	28	-	16571	28	EG=47	E=0.00077	fullScore=25.6
# Query sequences=1 normal letters=16571

TEST lastal -r6 -q18 -a21 -b9 -fTAB -j4 -Q1 -e90 -a7 -A12 -B4 /tmp/last-test SRR001981-1k.fastq
#
# a=7 b=9 A=12 B=4 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.41478e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=4.36661 j=4 Q=1
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.218273 K=0.335682
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
93	chrM	963	25	+	16775	SRR001981.67	6	24	+	36	18,1:0,6	EG=1.8e+04	E=0.00031	fullScore=101
104	chrM	973	20	+	16775	SRR001981.107	7	21	+	36	17,0:1,3	EG=1.7e+03	E=2.4e-05	fullScore=112
100	chrM	957	29	+	16775	SRR001981.202	0	31	-	36	6,0:1,8,0:2,10,1:0,4	EG=4e+03	E=6.2e-05	fullScore=112
119	chrM	952	33	+	16775	SRR001981.279	0	33	-	36	33	EG=63	E=7.1e-07	fullScore=131
104	chrM	949	33	+	16775	SRR001981.279	1	33	-	36	33	EG=1.7e+03	E=2.4e-05	fullScore=112
99	chrM	960	28	+	16775	SRR001981.279	0	28	-	36	28	EG=4.9e+03	E=7.8e-05	fullScore=109
97	chrM	960	28	+	16775	SRR001981.279	5	26	-	36	9,2:0,17	EG=7.6e+03	E=0.00012	fullScore=117
96	chrM	963	24	+	16775	SRR001981.279	0	24	-	36	24	EG=9.5e+03	E=0.00016	fullScore=105
108	chrM	968	22	+	16775	SRR001981.346	1	25	-	36	17,0:3,5	EG=6.9e+02	E=9.5e-06	fullScore=114
95	chrM	950	37	+	16775	SRR001981.597	0	33	-	36	12,1:0,6,2:0,10,1:0,5	EG=1.2e+04	E=0.0002	fullScore=108
90	chrM	949	32	+	16775	SRR001981.597	5	28	-	36	10,1:0,2,1:0,6,2:0,10	EG=3.5e+04	E=0.00062	fullScore=102
90	chrM	971	15	+	16775	SRR001981.805	21	15	+	36	15	EG=3.5e+04	E=0.00062	fullScore=91.3
93	chrM	959	27	+	16775	SRR001981.815	1	25	-	36	10,2:0,15	EG=1.8e+04	E=0.00031	fullScore=101
# Query sequences=1000 normal letters=35941

TEST lastal -fTAB -j4 -Q0 -e90 -a7 -A12 -B4 -b9 -r6 -q18 /tmp/last-test SRR001981-1k.fastq
#
# a=7 b=9 A=12 B=4 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.41478e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=4.36661 j=4 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.218273 K=0.335682
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
104	chrM	973	20	+	16775	SRR001981.107	7	21	+	36	17,0:1,3	EG=1.7e+03	E=2.4e-05	fullScore=112
96	chrM	963	23	+	16775	SRR001981.202	7	24	-	36	8,0:2,10,1:0,4	EG=9.5e+03	E=0.00016	fullScore=111
115	chrM	951	39	+	16775	SRR001981.279	0	35	-	36	4,1:0,6,1:0,6,2:0,8,0:1,2,1:0,8	EG=1.5e+02	E=1.8e-06	fullScore=122
92	chrM	949	23	+	16775	SRR001981.279	14	22	-	36	13,1:0,9	EG=2.3e+04	E=0.00039	fullScore=94.9
108	chrM	968	22	+	16775	SRR001981.346	1	25	-	36	17,0:3,5	EG=6.9e+02	E=9.5e-06	fullScore=114
90	chrM	971	15	+	16775	SRR001981.805	21	15	+	36	15	EG=3.5e+04	E=0.00062	fullScore=91.2
90	chrM	971	15	+	16775	SRR001981.815	11	15	-	36	15	EG=3.5e+04	E=0.00062	fullScore=99
# Query sequences=1000 normal letters=35941

TEST lastal -j4 -Qkeep -e90 -a7 -A12 -B4 -b9 -r6 -q18 /tmp/last-test SRR001981-1k.fastq
#
# a=7 b=9 A=12 B=4 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.41478e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=4.36661 j=4 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=0.218273 K=0.335682
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=104 EG=1.7e+03 E=2.4e-05 fullScore=112
s chrM          973 20 + 16775 ttttttttattttttAA-AAA
s SRR001981.107   7 21 +    36 TTTTTTTTATTTTTTAATAAA
q SRR001981.107                IIIIIIIIGIIIIII:IIIII
p                              ~~~~~~~~~~~~~~~~~'###

a score=96 EG=9.5e+03 E=0.00016 fullScore=111
s chrM          963 23 + 16775 ttttttaa--ttttttttttatttt
s SRR001981.202   7 24 -    36 TTTTTTAACATTTTTTTTTT-TTTT
q SRR001981.202                &IIIII3II@IIIIIIIIII-IIII
p                              ~~~~~~~~..''&&&%%%%$(###"

a score=115 EG=1.5e+02 E=1.8e-06 fullScore=122
s chrM          951 39 + 16775 ttttctttgttattttttaatttttttt-ttattttttAA
s SRR001981.279   0 35 -    36 TTTT-TTTGTT-TTTTTT--TTTTTTTTGTT-TTTTTTAA
q SRR001981.279                5(&%-5.&%*$-&-,7)+--,*)-***2$I2-5D$37$II
p                              #%%%'*-093/.,,,,--32~~~~~~~~*((**++,,,*&

a score=92 EG=2.3e+04 E=0.00039 fullScore=94.9
s chrM          949 23 + 16775 ttttttctttgttattttttaat
s SRR001981.279  14 22 -    36 TTTTTTTTTTGTT-TTTTTTAAT
q SRR001981.279                )+,*)-***2$I2-5D$37$III
p                              ~~~~~~(*,/>51/.//0120,&

a score=108 EG=6.9e+02 E=9.5e-06 fullScore=114
s chrM          968 22 + 16775 taattttttttttattt---tttAA
s SRR001981.346   1 25 -    36 TAATTTTTTTTTTATTTATTTTTAA
q SRR001981.346                BIIAIIEIIIIIIIIFIIIIIIIII
p                              ~~~~~~~~~~~~~~~~~*%$#$$$#

a score=90 EG=3.5e+04 E=0.00062 fullScore=91.2
s chrM          971 15 + 16775 ttttttttttatttt
s SRR001981.805  21 15 +    36 TTTTTTTTTTATTTT
q SRR001981.805                IIIIIIIIII;I0II
p                              ~~~~~~~~~~~~~~~

a score=90 EG=3.5e+04 E=0.00062 fullScore=99
s chrM          971 15 + 16775 ttttttttttatttt
s SRR001981.815  11 15 -    36 TTTTTTTTTTATTTT
q SRR001981.815                G,I'9I/D3+IEII7
p                              ~~~~~~~~~~~~~~~

# Query sequences=1000 normal letters=35941

TEST lastal -r1 -N2 /tmp/last-test hg19-M.fa
#
# a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 N=2 k=1 W=3 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=108 EG=4.6e-39 E=7.5e-44
s chrM 1243 356 + 16775 CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAA-AGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAA-CCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTG
s chrM  595 352 + 16571 CCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAA---ATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAG-AAGCCGGCGTAAAGAGTG

a score=26 EG=5 E=8.3e-05
s chrM 856 48 + 16775 TAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATT
s chrM 198 48 + 16571 TAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATT

a score=24 EG=45 E=0.00074
s chrM  6570 28 + 16775 GTCGATAAGAAGAGGAATTGAACCTCTG
s chrM 13264 28 - 16571 gttgttaagaagaggaattgaacctctg

# Query sequences=1 normal letters=16571

TEST tr Tt Uu < hg19-M.fa | lastal -r1 -N2 /tmp/last-test
#
# a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 N=2 k=1 W=3 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=108 EG=4.6e-39 E=7.5e-44
s chrM 1243 356 + 16775 CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAA-AGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAA-CCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTG
s chrM  595 352 + 16571 CCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAA---ATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAG-AAGCCGGCGTAAAGAGTG

a score=26 EG=5 E=8.3e-05
s chrM 856 48 + 16775 TAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATT
s chrM 198 48 + 16571 TAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATT

a score=24 EG=45 E=0.00074
s chrM  6570 28 + 16775 GTCGATAAGAAGAGGAATTGAACCTCTG
s chrM 13264 28 - 16571 gttgttaagaagaggaattgaacctctg

# Query sequences=1 normal letters=16571

TEST lastal -r1 -W19 -z50% -fTAB /tmp/last-test hg19-M.fa
#
# a=7 b=1 A=7 B=1 e=22 d=13 x=10 y=9 z=10 D=1e+06 E=1.13155e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=19 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
586	chrM	7095	1072	+	16775	chrM	6355	1072	+	16571	1072	EG=1.3e-266	E=2e-271
524	chrM	14904	1124	+	16775	chrM	14756	1124	+	16571	1124	EG=4.2e-237	E=6.6e-242
404	chrM	9824	918	+	16775	chrM	9109	918	+	16571	918	EG=5.7e-180	E=8.9e-185
376	chrM	11669	982	+	16775	chrM	10944	982	+	16571	982	EG=1.2e-166	E=1.9e-171
309	chrM	4097	689	+	16775	chrM	3334	689	+	16571	689	EG=9.5e-135	E=1.5e-139
251	chrM	6645	445	+	16775	chrM	5902	445	+	16571	445	EG=3.9e-107	E=6.2e-112
249	chrM	13901	681	+	16775	chrM	13168	681	+	16571	681	EG=3.5e-106	E=5.6e-111
242	chrM	13197	668	+	16775	chrM	12461	671	+	16571	510,0:3,158	EG=7.5e-103	E=1.2e-107
223	chrM	8486	501	+	16775	chrM	7745	501	+	16571	501	EG=8.3e-94	E=1.3e-98
160	chrM	3629	255	+	16775	chrM	2908	255	+	16571	146,1:0,53,0:1,55	EG=8.1e-64	E=1.3e-68
122	chrM	3112	338	+	16775	chrM	2409	334	+	16571	41,0:2,38,1:0,32,2:0,37,3:0,184	EG=1e-45	E=1.6e-50
110	chrM	5481	410	+	16775	chrM	4711	410	+	16571	410	EG=5.2e-40	E=8.4e-45
105	chrM	1702	210	+	16775	chrM	1042	208	+	16571	109,2:0,99	EG=1.2e-37	E=2e-42
90	chrM	5171	269	+	16775	chrM	4402	268	+	16571	49,1:0,219	EG=1.7e-30	E=2.8e-35
87	chrM	10825	299	+	16775	chrM	10106	299	+	16571	299	EG=4.6e-29	E=7.5e-34
86	chrM	1394	205	+	16775	chrM	744	203	+	16571	53,1:0,19,1:0,55,0:1,57,1:0,18	EG=1.4e-28	E=2.2e-33
83	chrM	2516	211	+	16775	chrM	1815	208	+	16571	58,0:1,42,1:0,24,3:0,83	EG=3.7e-27	E=6e-32
72	chrM	9353	216	+	16775	chrM	8638	216	+	16571	216	EG=6.3e-22	E=1e-26
71	chrM	4850	167	+	16775	chrM	4087	167	+	16571	167	EG=1.9e-21	E=3.1e-26
69	chrM	5978	181	+	16775	chrM	5208	181	+	16571	181	EG=1.7e-20	E=2.8e-25
67	chrM	9612	151	+	16775	chrM	8897	151	+	16571	151	EG=1.5e-19	E=2.5e-24
62	chrM	11367	148	+	16775	chrM	10642	148	+	16571	148	EG=3.6e-17	E=6e-22
61	chrM	12684	251	+	16775	chrM	11959	251	+	16571	251	EG=1.1e-16	E=1.8e-21
60	chrM	12944	128	+	16775	chrM	12211	128	+	16571	128	EG=3.3e-16	E=5.4e-21
48	chrM	8266	214	+	16775	chrM	7524	212	+	16571	45,1:0,17,1:0,150	EG=1.7e-10	E=2.8e-15
48	chrM	16456	319	+	16775	chrM	14425	318	+	16571	247,2:0,54,0:1,16	EG=1.7e-10	E=2.8e-15
45	chrM	1914	137	+	16775	chrM	1248	136	+	16571	33,1:0,31,1:0,41,0:1,30	EG=4.5e-09	E=7.4e-14
41	chrM	11243	77	+	16775	chrM	10518	77	+	16571	77	EG=3.6e-07	E=6e-12
40	chrM	2216	60	+	16775	chrM	1546	60	+	16571	60	EG=1.1e-06	E=1.8e-11
37	chrM	8183	51	+	16775	chrM	7446	51	+	16571	51	EG=2.9e-05	E=4.8e-10
33	chrM	1296	71	+	16775	chrM	649	71	+	16571	71	EG=0.0023	E=3.8e-08
33	chrM	2122	53	+	16775	chrM	1450	53	+	16571	53	EG=0.0023	E=3.8e-08
26	chrM	856	48	+	16775	chrM	198	48	+	16571	48	EG=5	E=8.3e-05
26	chrM	5538	94	+	16775	chrM	12989	94	+	16571	94	EG=5	E=8.3e-05
25	chrM	3973	69	+	16775	chrM	3237	70	+	16571	38,0:1,31	EG=15	E=0.00025
22	chrM	2478	22	+	16775	chrM	1783	22	+	16571	22	EG=4e+02	E=0.0066
24	chrM	6570	28	+	16775	chrM	13264	28	-	16571	28	EG=45	E=0.00074
# Query sequences=1 normal letters=16571

TEST lastal -r1 -W19 -x1g -fTAB /tmp/last-test hg19-M.fa
#
# a=7 b=1 A=7 B=1 e=22 d=13 x=8 y=8 z=21 D=1e+06 E=1.13155e+07
# R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=19 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1107	chrM	6510	2477	+	16775	chrM	5764	2482	+	16571	78,2:0,35,3:0,17,0:8,450,0:3,1085,0:3,67,5:0,57,1:0,19,1:0,152,0:3,505	EG=0	E=0
540	chrM	11243	1829	+	16775	chrM	10518	1821	+	16571	1692,8:0,129	EG=1e-244	E=1.6e-249
538	chrM	4097	1794	+	16775	chrM	3334	1787	+	16571	914,0:2,27,2:0,44,9:0,66,0:3,61,1:0,670	EG=9.2e-244	E=1.4e-248
524	chrM	14904	1124	+	16775	chrM	14756	1124	+	16571	1124	EG=4.2e-237	E=6.6e-242
509	chrM	9353	1389	+	16775	chrM	8638	1389	+	16571	1389	EG=5.9e-230	E=9.1e-235
473	chrM	13197	1385	+	16775	chrM	12461	1388	+	16571	510,0:3,875	EG=8.1e-213	E=1.3e-217
186	chrM	1702	574	+	16775	chrM	1042	564	+	16571	114,2:0,92,4:0,33,1:0,27,1:0,45,0:1,32,0:1,61,6:0,55,0:2,101	EG=3.4e-76	E=5.5e-81
160	chrM	3629	255	+	16775	chrM	2908	255	+	16571	146,1:0,53,0:1,55	EG=8.1e-64	E=1.3e-68
122	chrM	3112	338	+	16775	chrM	2409	334	+	16571	41,0:2,38,1:0,32,2:0,37,3:0,184	EG=1e-45	E=1.6e-50
114	chrM	5978	529	+	16775	chrM	5208	523	+	16571	233,0:3,84,5:0,39,3:0,14,0:1,69,2:0,80	EG=6.4e-42	E=1e-46
108	chrM	1243	356	+	16775	chrM	595	352	+	16571	56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,57,1:0,18	EG=4.6e-39	E=7.5e-44
95	chrM	2432	295	+	16775	chrM	1742	281	+	16571	26,1:0,12,4:0,25,4:0,11,2:0,57,0:1,42,1:0,24,3:0,83	EG=7.1e-33	E=1.2e-37
92	chrM	10825	349	+	16775	chrM	10106	346	+	16571	299,3:0,47	EG=1.9e-31	E=3.1e-36
26	chrM	856	48	+	16775	chrM	198	48	+	16571	48	EG=5	E=8.3e-05
26	chrM	5538	94	+	16775	chrM	12989	94	+	16571	94	EG=5	E=8.3e-05
24	chrM	6570	28	+	16775	chrM	13264	28	-	16571	28	EG=45	E=0.00074
# Query sequences=1 normal letters=16571

TEST lastal -L9 -m0 -j1 -q0 -d5 -n6 -fTAB /tmp/last-test tttttccccc.fa
#
# a=7 b=1 A=7 B=1 e=5 d=5 x=4 y=0 z=4 D=1e+06
# R=10 u=0 s=2 S=0 M=0 T=0 m=0 l=1 L=9 n=6 k=1 W=3 w=1000 t=-1 j=1 Q=0
# /tmp/last-test
# Reference sequences=2 normal letters=17803
#
#     A   C   G   T
# A   1   0   0   0
# C   0   1   0   0
# G   0   0   1   0
# T   0   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
6	chrM	7918	8	+	16775	tttttccccc	0	8	+	10	8
8	chrM	4594	9	+	16775	tttttccccc	0	9	+	10	9
9	chrM	8831	10	+	16775	tttttccccc	0	10	-	10	10
7	chrM	15299	10	+	16775	tttttccccc	0	10	-	10	10
7	chrM	1292	10	+	16775	tttttccccc	0	10	-	10	10
6	chrM	3866	9	+	16775	tttttccccc	0	9	-	10	9
8	chrM	4223	9	+	16775	tttttccccc	0	9	-	10	9
7	chrM	8832	9	+	16775	tttttccccc	0	9	-	10	9
# Query sequences=1 normal letters=10

TEST lastal -Q1 -T1 -j1 -s0 /tmp/last-test SRR001981-1k.fastq
#
# a=21 b=9 A=21 B=9 e=102 d=102 x=101 y=44 z=101 D=1e+06 E=5.09225e+07
# R=01 u=2 s=0 S=0 M=0 T=1 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=1 Q=1
# /tmp/last-test
# Reference sequences=1000 normal letters=35941
# lambda=0.229011 K=0.710602
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -18 -18 -18   3 -18 -18   3   3 -18 -18   1   1   1
# C -18   6 -18 -18   3   3 -18 -18 -18   3   1 -18   1   1
# G -18 -18   6 -18 -18   3   3 -18   3 -18   1   1 -18   1
# T -18 -18 -18   6 -18 -18   3   3 -18   3   1   1   1 -18
# M   3   3 -18 -18   3   0 -18   0   0   0  -2  -2   1   1
# S -18   3   3 -18   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -18   3   3 -18   0   3   0   0   0   1   1  -2  -2
# W   3 -18 -18   3   0 -18   0   3   0   0  -2   1   1  -2
# R   3 -18   3 -18   0   0   0   0   3 -18  -2   1  -2   1
# Y -18   3 -18   3   0   0   0   0 -18   3   1  -2   1  -2
# B -18   1   1   1  -2   1   1  -2  -2   1   1  -1  -1  -1
# D   1 -18   1   1  -2  -2   1   1   1  -2  -1   1  -1  -1
# H   1   1 -18   1   1  -2  -2   1  -2   1  -1  -1   1  -1
# V   1   1   1 -18   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=103 EG=7.3e+02 E=1.3e-05
s SRR001981.110  0 21 + 36 GCTTACAAATAAAGACTGTTC
q SRR001981.110            IIIIIIIIIIIIIIIIIIIII
s SRR001981.24  15 21 - 36 GCTTGCAAATAAAGACTGTTC
q SRR001981.24             I+II<IIIIIIIIIIIIIIII

a score=103 EG=7.3e+02 E=1.3e-05
s SRR001981.24   0 21 + 36 GAACAGTCTTTATTTGCAAGC
q SRR001981.24             IIIIIIIIIIIIIIII<II+I
s SRR001981.110 15 21 - 36 GAACAGTCTTTATTTGTAAGC
q SRR001981.110            IIIIIIIIIIIIIIIIIIIII

a score=180 EG=4e-06 E=2.4e-14
s SRR001981.530 0 30 + 36 GTTTTTCCAAATTTCGGTCATCAAATAATC
q SRR001981.530           IIIIIIIIIIIIIIIIIIIIIIIIIIIII<
s SRR001981.125 6 30 - 36 GTTTTTCCAAATTTCGGTCATCAAATAATC
q SRR001981.125           I?-?;.+8IIIBI3IIIIIIIIIIIIII>I

a score=108 EG=2.2e+02 E=3.8e-06
s SRR001981.412 14 22 + 36 ATTTTTCACTTATACACATAAT
q SRR001981.412            IIIIIIIIIIIIIIAIIIII3I
s SRR001981.172  0 22 - 36 ATTTTTCACTTATACATATAAT
q SRR001981.172            II=.+8III2IIIIIIIIIIII

a score=182 EG=2.3e-06 E=1.3e-14
s SRR001981.589 0 34 + 36 GTTTTGAGCAGCTAATTACCAGTGATAACGTTCC
q SRR001981.589           I@IIIAIIIGIDIIAIIIIII,I9'II-I%%II,
s SRR001981.293 2 34 - 36 GTTTTGAGCAGCTAATTACCAGTGCTAACGATCC
q SRR001981.293           IFII>IIIIIII<III@IIIIIIIIIIIIIIIII

a score=171 EG=4.2e-05 E=3e-13
s SRR001981.530 6 30 + 36 CCAAATTTCGGTCATCAAATAATCATTTAT
q SRR001981.530           IIIIIIIIIIIIIIIIIIIIIII<=IIIII
s SRR001981.394 0 30 - 36 ACAAATTTCGGTCATCAAATAATCATTTAT
q SRR001981.394           %/III5=5II5I,IBIIIIIIIIIIIGIII

a score=108 EG=2.2e+02 E=3.8e-06
s SRR001981.172 14 22 + 36 ATTATATGTATAAGTGAAAAAT
q SRR001981.172            IIIIIIIIIIII2III8+.=II
s SRR001981.412  0 22 - 36 ATTATGTGTATAAGTGAAAAAT
q SRR001981.412            I3IIIIIAIIIIIIIIIIIIII

a score=102 EG=9.2e+02 E=1.7e-05
s SRR001981.873  0 25 + 36 GTCAGAATATGGAATGTCATACTTC
q SRR001981.873            IIIIIIIIIIIIHIIIIIIIIIIII
s SRR001981.483 11 25 - 36 GTCTGAATATGGAATGTCATACCTC
q SRR001981.483            III>III<I9IIIIIIAIIIIIIII

a score=171 EG=4.2e-05 E=3e-13
s SRR001981.394 6 30 + 36 ATAAATGATTATTTGATGACCGAAATTTGT
q SRR001981.394           IIIGIIIIIIIIIIIBI,I5II5=5III/%
s SRR001981.530 0 30 - 36 ATAAATGATTATTTGATGACCGAAATTTGG
q SRR001981.530           IIIII=<IIIIIIIIIIIIIIIIIIIIIII

a score=180 EG=4e-06 E=2.4e-14
s SRR001981.125 0 30 + 36 GATTATTTGATGACCGAAATTTGGAAAAAC
q SRR001981.125           I>IIIIIIIIIIIIII3IBIII8+.;?-?I
s SRR001981.530 6 30 - 36 GATTATTTGATGACCGAAATTTGGAAAAAC
q SRR001981.530           <IIIIIIIIIIIIIIIIIIIIIIIIIIIII

a score=108 EG=2.2e+02 E=3.8e-06
s SRR001981.393  0 18 + 36 ACCGAAATTTGGAAAAAC
q SRR001981.393            I>IIIIIIIHIIIIIIII
s SRR001981.530 18 18 - 36 ACCGAAATTTGGAAAAAC
q SRR001981.530            IIIIIIIIIIIIIIIIII

a score=182 EG=2.3e-06 E=1.3e-14
s SRR001981.293 0 34 + 36 GGATCGTTAGCACTGGTAATTAGCTGCTCAAAAC
q SRR001981.293           IIIIIIIIIIIIIIIII@III<IIIIIII>IIFI
s SRR001981.589 2 34 - 36 GGAACGTTATCACTGGTAATTAGCTGCTCAAAAC
q SRR001981.589           ,II%%I-II'9I,IIIIIIAIIDIGIIIAIII@I

a score=102 EG=9.2e+02 E=1.7e-05
s SRR001981.483  0 25 + 36 GAGGTATGACATTCCATATTCAGAC
q SRR001981.483            IIIIIIIIAIIIIII9I<III>III
s SRR001981.873 11 25 - 36 GAAGTATGACATTCCATATTCTGAC
q SRR001981.873            IIIIIIIIIIIIHIIIIIIIIIIII

# Query sequences=1000 normal letters=35941

#
# a=10 b=1 A=10 B=1 e=36 d=20 x=35 y=18 z=35 D=1e+06 E=7.76903e+08
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.82048 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=507
# lambda=0.545487 K=0.26232
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   2  -2  -2  -2   1  -2  -2   1   1  -2  -2   0   0   0
# C  -2   2  -2  -2   1   1  -2  -2  -2   1   0  -2   0   0
# G  -2  -2   2  -2  -2   1   1  -2   1  -2   0   0  -2   0
# T  -2  -2  -2   2  -2  -2   1   1  -2   1   0   0   0  -2
# M   1   1  -2  -2   1   0  -2   0   0   0   0   0   0   0
# S  -2   1   1  -2   0   1   0  -2   0   0   0   0   0   0
# K  -2  -2   1   1  -2   0   1   0   0   0   0   0   0   0
# W   1  -2  -2   1   0  -2   0   1   0   0   0   0   0   0
# R   1  -2   1  -2   0   0   0   0   1  -2   0   0   0   0
# Y  -2   1  -2   1   0   0   0   0  -2   1   0   0   0   0
# B  -2   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -2   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -2   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -2   0   0   0   0   0   0   0   0   0   0
# N   0   0   0   0   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=558 EG=5.1e-124 E=5e-132
s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA-GGCANAATATCTGTGTC--AGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC
s LTR22C#LTR/ERVK  0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGGG----------------GGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC

# Query sequences=1 normal letters=485
#
# a=10 b=1 A=10 B=1 e=36 d=20 x=35 y=18 z=35 D=1e+06 E=7.76903e+08
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.82048 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=507
# lambda=0.545487 K=0.26232
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V   N
# A   2  -2  -2  -2   1  -2  -2   1   1  -2  -2   0   0   0   0
# C  -2   2  -2  -2   1   1  -2  -2  -2   1   0  -2   0   0   0
# G  -2  -2   2  -2  -2   1   1  -2   1  -2   0   0  -2   0   0
# T  -2  -2  -2   2  -2  -2   1   1  -2   1   0   0   0  -2   0
# M   1   1  -2  -2   1   0  -2   0   0   0   0   0   0   0   0
# S  -2   1   1  -2   0   1   0  -2   0   0   0   0   0   0   0
# K  -2  -2   1   1  -2   0   1   0   0   0   0   0   0   0   0
# W   1  -2  -2   1   0  -2   0   1   0   0   0   0   0   0   0
# R   1  -2   1  -2   0   0   0   0   1  -2   0   0   0   0   0
# Y  -2   1  -2   1   0   0   0   0  -2   1   0   0   0   0   0
# B  -2   0   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -2   0   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -2   0   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -2   0   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=572 EG=1.2e-127 E=7e-136
s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA-GGCANAATATCTGTGTC--AGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC
s LTR22C#LTR/ERVK  0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGG----------------GGGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC

# Query sequences=1 normal letters=485
#
# a=10 b=1 A=10 B=1 e=36 d=20 x=35 y=18 z=35 D=1e+06 E=7.76903e+08
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.82048 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=507
# lambda=0.545487 K=0.26232
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V   N
# A   2  -2  -2  -2   1  -2  -2   1   1  -2  -2   0   0   0   0
# C  -2   2  -2  -2   1   1  -2  -2  -2   1   0  -2   0   0   0
# G  -2  -2   2  -2  -2   1   1  -2   1  -2   0   0  -2   0   0
# T  -2  -2  -2   2  -2  -2   1   1  -2   1   0   0   0  -2   0
# M   1   1  -2  -2   1   0  -2   0   0   0   0   0   0   0   0
# S  -2   1   1  -2   0   1   0  -2   0   0   0   0   0   0   0
# K  -2  -2   1   1  -2   0   1   0   0   0   0   0   0   0   0
# W   1  -2  -2   1   0  -2   0   1   0   0   0   0   0   0   0
# R   1  -2   1  -2   0   0   0   0   1  -2   0   0   0   0   0
# Y  -2   1  -2   1   0   0   0   0  -2   1   0   0   0   0   0
# B  -2   0   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -2   0   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -2   0   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -2   0   0   0   0   0   0   0   0   0   0   0
# N   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=602 EG=1.7e-135 E=2.5e-144
s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA-GGCANAATATCTGTGTC--AGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC
s LTR22C#LTR/ERVK  0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGGG----------------GGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC

# Query sequences=1 normal letters=485
#
# a=128 b=1 A=128 B=1 e=210 d=117 x=209 y=109 z=209 D=1e+06 E=9.80233e+08
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=10.9229 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=507
# lambda=0.0914364 K=0.214039
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A  12 -12 -12 -12   6 -12 -12   6   6 -12 -12   2   2   2
# C -12  12 -12 -12   6   6 -12 -12 -12   6   2 -12   2   2
# G -12 -12  12 -12 -12   6   6 -12   6 -12   2   2 -12   2
# T -12 -12 -12  12 -12 -12   6   6 -12   6   2   2   2 -12
# M   6   6 -12 -12   6   0 -12   0   0   0  -3  -3   2   2
# S -12   6   6 -12   0   6   0 -12   0   0   2  -3  -3   2
# K -12 -12   6   6 -12   0   6   0   0   0   2   2  -3  -3
# W   6 -12 -12   6   0 -12   0   6   0   0  -3   2   2  -3
# R   6 -12   6 -12   0   0   0   0   6 -12  -3   2  -3   2
# Y -12   6 -12   6   0   0   0   0 -12   6   2  -3   2  -3
# B -12   2   2   2  -3   2   2  -3  -3   2   2  -1  -1  -1
# D   2 -12   2   2  -3  -3   2   2   2  -3  -1   2  -1  -1
# H   2   2 -12   2   2  -3  -3   2  -3   2  -1  -1   2  -1
# V   2   2   2 -12   2   2  -3  -3   2  -3  -1  -1  -1   2
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=2688 EG=4.6e-97 E=3.6e-104
s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA---GGCANAATATCTGTGTCAGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC
s LTR22C#LTR/ERVK  0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGG----------------GGGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC

# Query sequences=1 normal letters=485
#
# a=21 b=4 A=21 B=4 e=114 d=77 x=113 y=49 z=113 D=1e+06 E=2.92797e+07
# R=01 u=0 s=2 S=0 M=0 T=0 m=2 l=1 n=2 k=1 w=1000 t=4.88281 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=0.201859 K=0.288737
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6  -8  -8  -8   3  -8  -8   3   3  -8  -8   1   1   1
# C  -8   6  -8  -8   3   3  -8  -8  -8   3   1  -8   1   1
# G  -8  -8   6  -8  -8   3   3  -8   3  -8   1   1  -8   1
# T  -8  -8  -8   6  -8  -8   3   3  -8   3   1   1   1  -8
# M   3   3  -8  -8   3   0  -8   0   0   0  -2  -2   1   1
# S  -8   3   3  -8   0   3   0  -8   0   0   1  -2  -2   1
# K  -8  -8   3   3  -8   0   3   0   0   0   1   1  -2  -2
# W   3  -8  -8   3   0  -8   0   3   0   0  -2   1   1  -2
# R   3  -8   3  -8   0   0   0   0   3  -8  -2   1  -2   1
# Y  -8   3  -8   3   0   0   0   0  -8   3   1  -2   1  -2
# B  -8   1   1   1  -2   1   1  -2  -2   1   1   0   0   0
# D   1  -8   1   1  -2  -2   1   1   1  -2   0   1   0   0
# H   1   1  -8   1   1  -2  -2   1  -2   1   0   0   1   0
# V   1   1   1  -8   1   1  -2  -2   1  -2   0   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
5672	chrM	5764	2482	+	16571	chrM	6510	2477	+	16775	78,0:2,35,0:3,17,8:0,445,1:0,8,2:0,1082,3:0,54,0:4,18,0:1,52,0:1,19,0:1,150,2:0,4,1:0,503	EG=0	E=0
2564	chrM	14769	1111	+	16571	chrM	14917	1111	+	16775	446,1:0,7,0:1,657	EG=1.5e-212	E=2.5e-217
2355	chrM	8918	1381	+	16571	chrM	9633	1385	+	16775	152,1:0,10,0:2,17,2:0,9,0:1,917,0:3,18,2:0,19,2:0,12,8:0,8,0:1,16,0:9,11,0:3,177	EG=3.2e-194	E=5.2e-199
2096	chrM	12461	1220	+	16571	chrM	13197	1217	+	16775	81,0:7,20,1:0,9,6:0,329,0:1,8,1:0,55,3:0,156,1:0,12,4:0,14,1:0,6,0:6,513	EG=1.6e-171	E=2.7e-176
2017	chrM	10944	1395	+	16571	chrM	11669	1403	+	16775	386,4:0,4,0:1,8,0:3,604,0:1,3,0:1,4,2:0,69,0:2,13,2:0,72,1:0,21,0:1,73,0:8,129	EG=1.4e-164	E=2.3e-169
1474	chrM	3334	689	+	16571	chrM	4097	689	+	16775	689	EG=5.6e-117	E=9.2e-122
1109	chrM	1042	597	+	16571	chrM	1702	608	+	16775	110,1:0,3,0:3,95,0:4,30,0:1,27,1:0,2,0:2,44,1:0,31,1:0,62,0:6,52,0:2,3,0:3,23,4:0,7,0:2,2,5:0,53,1:0,15,0:1,4,0:1,20	EG=5.6e-85	E=9.3e-90
969	chrM	4087	991	+	16571	chrM	4850	998	+	16775	167,3:0,13,0:1,15,0:2,20,1:0,11,0:2,4,0:8,66,3:0,69,0:1,30,3:0,11,0:3,167,0:3,9,1:0,7,2:0,41,0:1,18,1:0,329	EG=1.1e-72	E=1.7e-77
955	chrM	2897	245	+	16571	chrM	3617	246	+	16775	9,0:1,148,0:1,53,1:0,34	EG=1.8e-71	E=3e-76
694	chrM	2171	572	+	16571	chrM	2890	560	+	16775	27,0:1,17,7:0,22,1:0,15,1:0,24,2:0,37,0:1,11,0:1,11,5:0,11,9:0,8,0:2,17,0:1,13,0:3,41,2:0,38,0:1,32,0:2,37,0:3,184	EG=1.4e-48	E=2.3e-53
644	chrM	1742	311	+	16571	chrM	2432	326	+	16775	18,1:0,2,0:2,17,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83,0:4,6,3:0,21	EG=3.3e-44	E=5.5e-49
627	chrM	656	291	+	16571	chrM	1303	296	+	16775	78,0:3,35,0:2,6,2:0,20,0:1,19,0:1,55,1:0,57,0:1,18	EG=1e-42	E=1.7e-47
587	chrM	5208	516	+	16571	chrM	5978	522	+	16775	74,0:2,17,2:0,88,0:3,19,3:0,5,5:0,14,0:5,6,3:0,21,0:3,14,1:0,12,2:0,29,0:1,6,0:4,30,0:2,9,0:1,13,1:0,73,0:1,2,0:1,67	EG=3.3e-39	E=5.5e-44
210	chrM	10518	77	+	16571	chrM	11243	77	+	16775	77	EG=3.7e-06	E=6.2e-11
137	chrM	3237	70	+	16571	chrM	3973	69	+	16775	37,1:0,32	EG=9.3	E=0.00016
130	chrM	2807	38	+	16571	chrM	3520	38	+	16775	38	EG=38	E=0.00064
140	chrM	3279	28	+	16571	chrM	10177	28	-	16775	28	EG=5.1	E=8.5e-05
# Query sequences=2 normal letters=17803
#
# a=15 b=3 A=15 B=3 e=79 d=40 x=78 y=46 z=78 D=1e+06 E=1.42772e+10
# R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.5512 j=7 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=70
# lambda=0.203841 K=0.140698
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   5  -5  -5  -5   2  -5  -5   2   2  -5  -5   1   1   1
# C  -5   5  -5  -5   2   2  -5  -5  -5   2   1  -5   1   1
# G  -5  -5   5  -5  -5   2   2  -5   2  -5   1   1  -5   1
# T  -5  -5  -5   5  -5  -5   2   2  -5   2   1   1   1  -5
# M   2   2  -5  -5   2   0  -5   0   0   0  -1  -1   1   1
# S  -5   2   2  -5   0   2   0  -5   0   0   1  -1  -1   1
# K  -5  -5   2   2  -5   0   2   0   0   0   1   1  -1  -1
# W   2  -5  -5   2   0  -5   0   2   0   0  -1   1   1  -1
# R   2  -5   2  -5   0   0   0   0   2  -5  -1   1  -1   1
# Y  -5   2  -5   2   0   0   0   0  -5   2   1  -1   1  -1
# B  -5   1   1   1  -1   1   1  -1  -1   1   1   0   0   0
# D   1  -5   1   1  -1  -1   1   1   1  -1   0   1   0   0
# H   1   1  -5   1   1  -1  -1   1  -1   1   0   0   1   0
# V   1   1   1  -5   1   1  -1  -1   1  -1   0   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
a score=92 EG=46 E=8e-07 fullScore=102
s NW_017707804.1 0 70 + 70 AACACCACAATGAGATACCACCTCACAGCAGTCAGAATGGCTACAATTAACAAGTCAGGAAAGGACAGAT
s 57:130722274   0 54 + 54 AAAACCACAATGAGA---------------GTCAGAGTGGTGATTATTAA-AAGTCGAGAAATGATAGAT
p                          $&'~~~~~~~~~~~~(.0233.,,,,,+--&)*+,,,-.-+++++---)'%(+253--/111/0/,,+(%
c 20.6 0.00414 1.97 1.05 1.13 4.98 0.158 2.83 0.966 0.0011 9.56 0.997 0.0153 0.0037 1.07 6.54 51.8 16.4 0.361 3 0.27

# Query sequences=1 normal letters=54
#
# a=31 b=1 A=37 B=2 e=58 d=58 x=57 y=42 z=57 D=10 E=3.95616e+11
# R=01 u=0 s=2 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.16075 j=3 Q=1
# /tmp/last-test
# Reference sequences=1 normal letters=100000
# lambda=0.240522 K=0.452697
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   6 -23 -15 -22   3 -17 -18   3   3 -22 -19   1   1   1
# C -24   6 -23 -17   3   3 -19 -19 -23   3   1 -20   1   1
# G -15 -23   6 -22 -17   3   3 -18   3 -22   1   1 -19   1
# T -22 -17 -22   5 -19 -19   3   3 -22   3   1   1   1 -20
# M   3   3 -17 -19   3   0 -18   0   0   0  -2  -2   1   1
# S -17   3   3 -19   0   3   0 -18   0   0   1  -2  -2   1
# K -18 -19   3   3 -18   0   3   0   0   0   1   1  -1  -2
# W   3 -19 -18   3   0 -18   0   3   0   0  -1   1   1  -2
# R   3 -23   3 -22   0   0   0   0   3 -22  -2   1  -2   1
# Y -23   3 -22   3   0   0   0   0 -23   3   1  -1   1  -2
# B -19   1   1   1  -2   1   1  -1  -2   1   1   0   0  -1
# D   1 -20   1   1  -2  -2   1   1   1  -1   0   1   0  -1
# H   1   1 -19   1   1  -2  -1   1  -2   1   0   0   1  -1
# V   1   1   1 -20   1   1  -2  -2   1  -2  -1  -1  -1   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# m=1 s=77 d=2 c=0.004 t=1e-05 M=7 S=1.7
# trans=-99
# cismax=194886
# GT=11 GC=-5 AT=-11 NN=-14
# AG=11 AC=-11 NN=-14
#
a score=252 mismap=1e-10 sense=-15 acc=AG
s XSR          87799 43 + 100000 gGAGGTTAGGTAGGTGTGGAAACAAGTGAGGCCGACCACAGAC
s ERR4570987.9     0 43 +    151 GGAGGTTAGGTAGGTGTGGAAACAAGTGAGGCCGACCACAGAC
q ERR4570987.9                   A?AAB3FFFFFFCFGGF?2DDG44FGHB5GAFEA2AEEDDCF2

a score=575 mismap=1e-10 sense=-15 don=GT
s XSR          88741 108 + 100000 CAAATTGAAAAGAAGCTAACGAATATTTCAAATGCGGAAGGCCAGGATTCTTGAAGCGCGGCGAGTATTTCTCCTTCGTACTTGtcctTCGAGAGAATCATCAAGTTC
s ERR4570987.9    43 108 +    151 CAAATTGAAAAGAAGCTAACGAATATTTCAAATGCGGAAGGCCAGGATTCTTGACGCGCGGCGAGTATTTCTCCTTCGTACTTGTCCTTTGAGAGAATCATCAAGTTC
q ERR4570987.9                    ABA1BF55FBHFFHHHB5DGGE1B?BF5GGFHD55E??E>EAF1FAFGHHHHFF3EC@EE?CGGG/01GHHHE1FHBG<GEHDD<<GGGHDGFA<</DGFFF0<GG0=

a score=107 mismap=1.84e-08 sense=-16 acc=AG
s XSR            70407 19 + 100000 CGTGTTTAACGTCCTTCGA
s ERR4570987.920     0 19 +    151 CGTGTTTAACGTCCTTCGA
q ERR4570987.920                   1AAAA>FBD1A1AFABGCE

a score=758 mismap=1e-10 sense=-16 don=GT
s XSR            70475 132 + 100000 TGTAAGTACTGATGTCGATTTCCTCGGGGAGCTCGGTGATCTTGACTTCGAATCGGTCCTGGACGGACTGGGAGGTCTTGGCGTCTTCCTCGTCGGAAACGAAGGAGATGGCAAGACCCTTGGTGCCGAATC
s ERR4570987.920    19 132 +    151 TGTAAGTACTGATGTCGATTTCCTCGGGGAGCTCGGTGATCTTGACTTCGAATCGGTCCTGGACGGACTGGGAGGTCTTGGCGTCTTCCTCGTCGGAAACGAAGGAGATGGCAAGACCCTTGGTGCCGAATC
q ERR4570987.920                    33FFHF3DGG3FDBGHCF0FEFFFHE0A?E?FF1AA/A/FDGFHEFBAGEHFGEHCECGFFEHAEE/>>>CEA//?FGBGGBEEGFEBGFBEHGGCGGGGA/?A/0/?CD1FHF/0F0<GHFH1FFG<<C..

a score=291 mismap=1e-10 sense=-16 acc=AG
s XSR             51419 51 + 100000 GCCGCGTACAGACTATGCGACACCTTCATCATTTCATCGTTTGCCGTGTCA
s ERR4570987.1142     1 51 +    136 GCCGCGTACAGACTATGCGACACCTTCATCATTTCATCGTTTGCCGTGTCA
q ERR4570987.1142                   AAAA@>DDD03AGFGGFGCEG?000AF1FGFHHHHHHHHGHFAGFE/AFF2

a score=475 mismap=1e-10 sense=-16 don=GT
s XSR             51518 82 + 100000 CAGAAATCGACGATGTCTTTGAACAAATACACGACTTCGGGAAAGGAAGAAGACAGCCGCGCTAGTTTCAAAATCGCCTTTG
s ERR4570987.1142    52 82 +    136 CAGAAATCGACGATGTCTTTGAACAAATACACGACTTCGGGAAAGGAAGAAGACAGCCGCGCTAGTTTCAAAATCGCCTTTG
q ERR4570987.1142                   GFGHHHFFECE?/F/FEFHHF2GCB>A111FFFGEGGHFA/EEC00FFF0CGHHGFHEGGGCGGGFFGHF1<<FGCECC?G1

a score=569 mismap=1e-10 sense=-15 acc=AG
s XSR              98139 99 + 100000 TTCGCCGTTACCTCTGCTGTCCACGAGTTCGTCGAGGAGAGAAGCCAGAAGTTGAAATTAGGAGAAAGCCTCAGTGATTACGTTCACACGGCGCTCCAG
s ERR4570987.11099    52 99 -    151 TTCGCCGTTACCTCTGCTGTCCACGAGTTCGTCGAGGAGAGAAGCCAGAAGTTGAAATTAGGAGAAAGCCTCAGTGATTACGTTCACACGGCGCTCCAG
q ERR4570987.11099                   /EE?@1HBGFF?3FFHGHHGFCEEFHECGGFGECHHHGHHGEGEHHHEHHHHEHFHHFFFFHHGGFHGGHHGHHHHFEFAADGGEGGD@?D3FCA@AA?

a score=292 mismap=1e-10 sense=-15 don=GT
s XSR              97918 52 + 100000 GATCGAAAAAATGAACAACTGGGATTGCTCTAAAGTACACAACTTCGTCCAG
s ERR4570987.11099     0 52 -    151 GATCGAAAAAATGAACAACTGGGATTGCTCTAAAGTACACAACTTCGTCCAG
q ERR4570987.11099                   <FGFBGHHHHHHHEGBG1GG?0HFBGHFFGHHHG22F?2FG/G?GCC22GF@

# Query sequences=4 normal letters=589
#
# a=29 b=2 A=28 B=1 e=105 d=-1 x=104 y=47 z=104 D=1e+06 E=2.68446e+07
# R=01 u=0 s=0 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.72795 j=3 Q=0
# /tmp/last-test
# Reference sequences=4 normal letters=35606
# lambda=0.21678 K=0.20616
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   4  -3  -2  -5   2  -3  -4   1   2  -4  -3   1   0   1
# C  -3   4  -7  -2   2   2  -3  -2  -4   2   1  -3   1   1
# G  -4  -8   7  -9  -6   3   3  -6   3  -9   1   1  -7   1
# T  -5  -2  -7   4  -3  -3   2   2  -6   2   1   0   1  -4
# M   2   2  -4  -3   2   0  -3   0   0   0  -1  -1   0   1
# S  -3   2   3  -4   0   2   0  -3   0   0   1  -1  -1   1
# K  -5  -3   2   2  -4   0   2   0  -1   0   1   1  -1  -1
# W   1  -2  -4   1   0  -3   0   1   0   0  -1   1   0  -1
# R   2  -4   3  -6   0   0   0   0   3  -5  -1   1  -1   1
# Y  -4   2  -7   2   0   0   0   0  -5   2   1  -1   1  -1
# B  -4   1   1   1  -1   1   1  -1  -2   1   1   0   0  -1
# D   1  -3   1   0  -1  -1   1   1   1  -1   0   1   0   0
# H   0   1  -5   1   0  -1  -1   0  -1   1   0   0   1   0
# V   1   1   1  -4   1   1  -1  -1   1  -1  -1   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
# batch 0
21390	chrM	1890	13651	-	16775	chrM	2422	13564	-	16571	84,3:0,171,0:8,17,8:0,900,0:3,515,0:5,29,0:4,23,3:0,51,9:0,129,8:0,1281,6:0,12,0:6,458,3:0,48,3:0,340,3:0,21,1:0,1406,3:0,138,8:0,52,0:5,33,0:9,62,0:4,27,2:0,14,0:4,18,0:17,514,0:3,152,1:0,18,1:0,58,5:0,67,0:3,1085,0:3,450,0:8,17,3:0,35,2:0,81,0:30,80,2:0,68,0:1,21,3:0,32,5:0,79,2:0,29,0:5,263,1:0,26,0:1,673,1:0,63,0:3,70,10:0,11,0:1,20,2:0,29,0:2,930,21:0,20,7:0,29,0:1,44,1:0,15,5:0,21,3:0,19,6:0,67,0:1,53,1:0,148,1:0,21,0:4,15,0:1,16,12:0,70,4:0,8,2:0,212,3:0,37,2:0,33,1:0,37,0:2,41,3:0,13,3:0,25,0:4,23,0:9,11,1:0,37,0:2,24,0:1,38,0:8,16,1:0,30,3:0,40,0:1,38,16:0,11,0:4,41,1:0,93,3:0,24,1:0,43,0:1,56,2:0,11,4:0,26,4:0,16,1:0,21,14:0,36,0:2,25,0:9,21,16:0,33,2:0,9,0:1,60,0:7,34,5:0,57,6:0,60,0:1,33,0:1,38,1:0,34,1:0,30,4:0,95,2:0,114,3:0,14,5:0,98,1:0,58,0:1,55,1:0,19,1:0,63,3:0,82,0:1,56,0:1,9	EG=0	E=0
2669	chrM	598	1273	-	16775	chrM	547	1268	-	16571	94,4:0,24,0:1,22,2:0,1127	EG=3.6e-239	E=5.4e-244
367	chrM	0	562	-	16775	chrM	1828	588	-	16571	16,0:1,54,2:0,246,5:0,29,0:5,75,0:27,135	EG=2e-22	E=3.3e-27
130	chrM	11141	96	-	16775	chrM	3486	96	-	16571	96	EG=4.2	E=7e-05
107	chrM	15871	42	-	16775	chrM	16325	42	-	16571	42	EG=6.2e+02	E=0.01
106	chrM	9486	72	-	16775	chrM	13183	72	-	16571	72	EG=7.7e+02	E=0.013
# Query sequences=1 normal letters=16571
#
# a=29 b=2 A=28 B=1 e=105 d=-1 x=104 y=47 z=104 D=1e+06 E=2.68446e+07
# R=01 u=0 s=1 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.72795 j=3 Q=0
# /tmp/last-test
# Reference sequences=4 normal letters=35606
# lambda=0.21678 K=0.20616
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   4  -3  -2  -5   2  -3  -4   1   2  -4  -3   1   0   1
# C  -3   4  -7  -2   2   2  -3  -2  -4   2   1  -3   1   1
# G  -4  -8   7  -9  -6   3   3  -6   3  -9   1   1  -7   1
# T  -5  -2  -7   4  -3  -3   2   2  -6   2   1   0   1  -4
# M   2   2  -4  -3   2   0  -3   0   0   0  -1  -1   0   1
# S  -3   2   3  -4   0   2   0  -3   0   0   1  -1  -1   1
# K  -5  -3   2   2  -4   0   2   0  -1   0   1   1  -1  -1
# W   1  -2  -4   1   0  -3   0   1   0   0  -1   1   0  -1
# R   2  -4   3  -6   0   0   0   0   3  -5  -1   1  -1   1
# Y  -4   2  -7   2   0   0   0   0  -5   2   1  -1   1  -1
# B  -4   1   1   1  -1   1   1  -1  -2   1   1   0   0  -1
# D   1  -3   1   0  -1  -1   1   1   1  -1   0   1   0   0
# H   0   1  -5   1   0  -1  -1   0  -1   1   0   0   1   0
# V   1   1   1  -4   1   1  -1  -1   1  -1  -1   0   0   1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
# batch 0
21390	chrM	1234	13651	+	16775	chrM	585	13564	+	16571	9,0:1,56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,58,1:0,98,5:0,14,3:0,114,2:0,95,4:0,30,1:0,34,1:0,38,0:1,33,0:1,60,6:0,57,5:0,34,0:7,60,0:1,9,2:0,33,16:0,21,0:9,25,0:2,36,14:0,21,1:0,16,4:0,26,4:0,11,2:0,56,0:1,43,1:0,24,3:0,93,1:0,41,0:4,11,16:0,38,0:1,40,3:0,30,1:0,16,0:8,38,0:1,24,0:2,37,1:0,11,0:9,23,0:4,25,3:0,13,3:0,41,0:2,37,1:0,33,2:0,37,3:0,212,2:0,8,4:0,70,12:0,16,0:1,15,0:4,21,1:0,148,1:0,53,0:1,67,6:0,19,3:0,21,5:0,15,1:0,44,0:1,29,7:0,20,21:0,930,0:2,29,2:0,20,0:1,11,10:0,70,0:3,63,1:0,673,0:1,26,1:0,263,0:5,29,2:0,79,5:0,32,3:0,21,0:1,68,2:0,80,0:30,81,2:0,35,3:0,17,0:8,450,0:3,1085,0:3,67,5:0,58,1:0,18,1:0,152,0:3,514,0:17,18,0:4,14,2:0,27,0:4,62,0:9,33,0:5,52,8:0,138,3:0,1406,1:0,21,3:0,340,3:0,48,3:0,458,0:6,12,6:0,1281,8:0,129,9:0,51,3:0,23,0:4,29,0:5,515,0:3,900,8:0,17,0:8,171,3:0,84	EG=0	E=0
2669	chrM	14904	1273	+	16775	chrM	14756	1268	+	16571	1127,2:0,22,0:1,24,4:0,94	EG=3.6e-239	E=5.4e-244
367	chrM	16213	562	+	16775	chrM	14155	588	+	16571	135,0:27,75,0:5,29,5:0,246,2:0,54,0:1,16	EG=2e-22	E=3.3e-27
130	chrM	5538	96	+	16775	chrM	12989	96	+	16571	96	EG=4.2	E=7e-05
107	chrM	862	42	+	16775	chrM	204	42	+	16571	42	EG=6.2e+02	E=0.01
106	chrM	7217	72	+	16775	chrM	3316	72	+	16571	72	EG=7.7e+02	E=0.013
# Query sequences=1 normal letters=16571
#
# a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07
# R=01 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0
# /tmp/last-test
# Reference sequences=1 normal letters=16571
# lambda=1.09602 K=0.335388
#
#     A   C   G   T   M   S   K   W   R   Y   B   D   H   V
# A   1  -1  -1  -1   0  -1  -1   0   0  -1  -1   0   0   0
# C  -1   1  -1  -1   0   0  -1  -1  -1   0   0  -1   0   0
# G  -1  -1   1  -1  -1   0   0  -1   0  -1   0   0  -1   0
# T  -1  -1  -1   1  -1  -1   0   0  -1   0   0   0   0  -1
# M   0   0  -1  -1   0   0  -1   0   0   0   0   0   0   0
# S  -1   0   0  -1   0   0   0  -1   0   0   0   0   0   0
# K  -1  -1   0   0  -1   0   0   0   0   0   0   0   0   0
# W   0  -1  -1   0   0  -1   0   0   0   0   0   0   0   0
# R   0  -1   0  -1   0   0   0   0   0  -1   0   0   0   0
# Y  -1   0  -1   0   0   0   0   0  -1   0   0   0   0   0
# B  -1   0   0   0   0   0   0   0   0   0   0   0   0   0
# D   0  -1   0   0   0   0   0   0   0   0   0   0   0   0
# H   0   0  -1   0   0   0   0   0   0   0   0   0   0   0
# V   0   0   0  -1   0   0   0   0   0   0   0   0   0   0
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# score	name1	start1	alnSize1	strand1	seqSize1	name2	start2	alnSize2	strand2	seqSize2	blocks
1107	chrM	5764	2482	+	33142	chrM	6510	2477	+	16775	78,0:2,35,0:3,17,8:0,450,3:0,1085,3:0,67,0:5,57,0:1,19,0:1,152,3:0,505	EG=0	E=0
540	chrM	10518	1821	+	33142	chrM	11243	1829	+	16775	1692,0:8,129	EG=1e-244	E=1.6e-249
538	chrM	3334	1787	+	33142	chrM	4097	1794	+	16775	914,2:0,27,0:2,44,0:9,66,3:0,61,0:1,670	EG=9.1e-244	E=1.4e-248
524	chrM	14756	1124	+	33142	chrM	14904	1124	+	16775	1124	EG=4.2e-237	E=6.6e-242
509	chrM	8638	1389	+	33142	chrM	9353	1389	+	16775	1389	EG=5.8e-230	E=9.2e-235
473	chrM	12461	1388	+	33142	chrM	13197	1385	+	16775	510,3:0,875	EG=8e-213	E=1.3e-217
186	chrM	1042	564	+	33142	chrM	1702	574	+	16775	114,0:2,92,0:4,33,0:1,27,0:1,45,1:0,32,1:0,61,0:6,55,2:0,101	EG=3.2e-76	E=5.3e-81
160	chrM	2908	255	+	33142	chrM	3629	255	+	16775	146,0:1,53,1:0,55	EG=7.7e-64	E=1.3e-68
122	chrM	2409	334	+	33142	chrM	3112	338	+	16775	41,2:0,38,0:1,32,0:2,37,0:3,184	EG=9.4e-46	E=1.6e-50
114	chrM	5208	523	+	33142	chrM	5978	529	+	16775	233,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80	EG=6.1e-42	E=1e-46
108	chrM	595	352	+	33142	chrM	1243	356	+	16775	56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,18	EG=4.4e-39	E=7.2e-44
95	chrM	1742	281	+	33142	chrM	2432	295	+	16775	26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83	EG=6.7e-33	E=1.1e-37
92	chrM	10106	346	+	33142	chrM	10825	349	+	16775	299,0:3,47	EG=1.8e-31	E=3e-36
48	chrM	14425	318	+	33142	chrM	16456	319	+	16775	247,0:2,54,1:0,16	EG=1.6e-10	E=2.6e-15
25	chrM	3237	70	+	33142	chrM	3973	69	+	16775	38,1:0,31	EG=14	E=0.00023
23	chrM	15975	49	+	33142	chrM	16128	49	+	16775	49	EG=1.3e+02	E=0.0021
24	chrM	3279	28	+	33142	chrM	10177	28	-	16775	28	EG=42	E=0.0007
# Query sequences=2 normal letters=17803