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#! /bin/sh
try () {
echo TEST "$@"
eval "$@"
echo
}
cd $(dirname $0)
PATH=../bin:$PATH
db=/tmp/$(basename $0 .sh)
trap 'rm -f $db*' EXIT
{
lastdb --bits=4 -R10 $db ../examples/humanMito.fa
try "last-train -m1 $db < ../examples/mouseMito.fa"
try last-train -m1 -C2 --revsym $db ../examples/mouseMito.fa
try last-train -m1 -k16 --matsym --gapsym $db ../examples/mouseMito.fa
lastdb -uBISF -S2 $db ../examples/humanMito.fa
try last-train -S0 -Q1 $db bs100.fastq
} 2>&1 |
grep -v '^# lastal' | diff -u last-train-test.out -
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