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# LAST version 1066
#
# a=15 b=4 A=16 B=4 e=160 d=127 x=159 y=46 z=159 D=1e+06 E=148.452
# R=01 u=0 s=2 S=1 M=0 T=0 m=1 l=1 n=1 k=1 w=1000 t=4.57306 j=3 Q=0
# /home/mcfrith/data/genome/hg38/last/hg38naas-NEAR
# Reference sequences=195 normal letters=2934876451
# lambda=0.221681 K=0.376308
#
# A C G T M S K W R Y B D H V
# A 6 -23 -9 -23 3 -12 -12 3 3 -23 -14 1 1 1
# C -20 6 -23 -16 3 3 -18 -18 -21 3 1 -19 1 1
# G -10 -23 6 -23 -13 3 3 -13 3 -23 1 1 -15 1
# T -23 -14 -22 6 -17 -16 3 3 -22 3 1 1 1 -18
# M 3 3 -12 -18 3 0 -14 0 0 0 -2 -2 1 1
# S -13 3 3 -18 0 3 0 -15 0 0 1 -2 -2 1
# K -13 -17 3 3 -14 0 3 0 0 0 1 1 -2 -2
# W 3 -17 -12 3 0 -14 0 3 0 0 -2 1 1 -2
# R 3 -23 3 -23 0 0 0 0 3 -23 -2 1 -2 1
# Y -21 3 -22 3 0 0 0 0 -22 3 1 -2 1 -2
# B -14 1 1 1 -2 1 1 -2 -2 1 1 -1 -1 -1
# D 1 -18 1 1 -2 -2 1 1 1 -2 -1 1 -1 -1
# H 1 1 -14 1 1 -2 -2 1 -2 1 -1 -1 1 -1
# V 1 1 1 -19 1 1 -2 -2 1 -2 -1 -1 -1 1
#
# Coordinates are 0-based. For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# batch 0
a score=216 EG2=0.0006 E=2.6e-08
s chr14 49704362 45 + 107043718 TCTttttattttttttccttttctgtttttttttttttttttttt
s spliceWithGap 98 44 + 7262 TCTtttt-ttttttttccttttgtgtttttttttttttttttttt
a score=197 EG2=0.041 E=1.7e-06
s chr5 53000873 45 + 181538259 TTCttttttttctttttctttttgttttttttttttttttttttt
s spliceWithGap 97 44 + 7262 TTCTttttttt-tttttccttttgtgttttttttttttttttttt
a score=186 EG2=0.47 E=2e-05
s chr15 96899561 31 + 101991189 CCATAaaaaaaaaaaaaaaaaaagaaaaaaa
s spliceWithGap 1840 31 + 7262 CCATAaaaaaaaaaaaaaaaaaagaaaaaaa
a score=180 EG2=1.8 E=7.5e-05
s chr14 89975575 30 + 107043718 TTtgtgttttttttttttttttttttAATG
s spliceWithGap 116 30 + 7262 tttgtgttttttttttttttttttttAATG
a score=180 EG2=1.8 E=7.5e-05
s chr7 139266226 30 + 159345973 Aaaaaaaaaaaaaaaaaaagaaaaaaacct
s spliceWithGap 1844 30 + 7262 AaaaaaaaaaaaaaaaaaagaaaaaaaCCT
a score=180 EG2=1.8 E=7.5e-05
s chr9 374443 30 + 138394717 TCCTTttgtgtttttttttttttttttttt
s spliceWithGap 112 30 + 7262 tccttttgtgtttttttttttttttttttt
a score=175 EG2=5.3 E=0.00023
s chr14 50098199 34 + 107043718 GTCTTGCCAAaaaaaaaaaaaaaaaaaaagaaaa
s spliceWithGap 1834 34 + 7262 GTCTTGCCATAaaaaaaaaaaaaaaaaaagaaaa
a score=171 EG2=13 E=0.00055
s chr16 88292798 31 + 90338345 AaaaaaaaaaaaaaaaaaaaaCCTCTAACAG
s spliceWithGap 1850 31 + 7262 aaaaaaaaaaaaagaaaaaaaCCTCTAACAG
a score=170 EG2=16 E=0.00069
s chrY 25192029 31 + 57227415 aaaaaaaaaagaaaaaaaagaaaaaaaCCTC
s spliceWithGap 1844 31 + 7262 AaaaaaaaaaaaaaaaaaagaaaaaaaCCTC
a score=169 EG2=20 E=0.00086
s chr9 103222739 33 + 138394717 AaaaaaaaaaaaaaaaaaagaaaaaaaactctA
s spliceWithGap 1844 33 + 7262 AaaaaaaaaaaaaaaaaaagaaaaaaaCCTCTA
a score=166 EG2=39 E=0.0017
s chr11 65756025 35 + 135086622 TAaaaaaaaaaaaaaaaaaaaaaaaaaTCCTCTAA
s spliceWithGap 1843 35 + 7262 TAaaaaaaaaaaaaaaaaaagaaaaaaaCCTCTAA
a score=164 EG2=61 E=0.0026
s chr20 55721155 30 + 64444167 AaaaaaaaaaaaaaaaagaagaaaACCTCT
s spliceWithGap 1846 30 + 7262 aaaaaaaaaaaaaaaaagaaaaaaaCCTCT
a score=164 EG2=61 E=0.0026
s chrX 22098081 31 + 156040895 TTTCCTCTTGtgttttttttttttttttttt
s spliceWithGap 110 31 + 7262 tttccttttgtgttttttttttttttttttt
a score=162 EG2=95 E=0.004
s chr9 122853376 27 + 138394717 ATaaaaaaaaaaaaaaaaaaagaaaaa
s spliceWithGap 1842 27 + 7262 ATAaaaaaaaaaaaaaaaaaagaaaaa
a score=12392 EG2=0 E=0
s chr6 42691029 2476 + 170805979 AGACGGGGAAATCCTTTACA-TTTATGCAAAGAGCGATTCAAGAAGAT----TCAGAAGCTCTGGCACCAACACAGTGTCACAGAGGAAATTG---GACATGCACAGGAAGCCAATCAGACACTGGTTGGCATTGACTGGCAACATTTATAATTATTGCACCACCAAAAAACACAAACTTGGATTTTTTTAACCCAGTTGGCTTTTTAAGAAAGAAAGAAGTTCTGCTGAATTTGGAAATAAATTCTTTATTTAAACTTTCCTTCCCAGTTTTATAGTTTCTGGTTCTGAGGACTGATGAAAATCATCTTCCATCAGCAGATTTTCTTGCACTGTTTGCTGTGCCCC-TCAAATATAATGTCTTGGGTTTTAAGATCGAGCAAGGAGCTTCTCTTCCTAGATTGGATCCCAGCCCCTTTGTGGGGGTCTGACTGCATAGTCCCAGCCATTATGTGATATTTCACGTTATTGATGATAGTGAACCGTGGGTCCGAAGCTGACTCAACGGAGGCAGGGAACAAAGTCTCTGTGGTCTGTTGGGTCATACTTCCTGGTTCCACTGAGTGGCCCAACACTGGGACTGGGTTGGTGTCCCCTCTGCTGACAGGACCCTACTCCTAGGAGCAAAGTGGTTGATTTTGAAGGCAGTGTTCCCTTCTCTCCATTGACTATGAGAGAGTTGGGGGACACACATGCAGAAGAAGCCCGTGGGGAGAAGGTGGATT-CCTGGTGTGCT--GGCTGGTTTTTCAGGGCTGTTAGAGGTtttt---tttttttctttttttttttATGGCAAGACTTTTGGC-TTTGAGAAAACTCACTTAGAGGGCTTTCCAAAAACTTAGGATGGtct-aaaaaattaggatattc-tTTTAGAATTAGGAAGaaaaattaggatattctaaaagaatatggattaaaaatttaggatattcttttagaTATCCTAATATCTAGATGAGAGGCCTTCCTTCATAAGATCTGGTTGTTTGGGCTGTGGTTGGCATAAGTGATATTTATTTTGGCCTCTGTCACATCCAGTTTCT-TGAGCTTTTAAGGTAAGCTTCTTTTGGCTTTTTTTCAGATGTTCACCAAGCTTAAGTTTAAAATAATAGGTATTCT-AAAAG-AGTATCCTAATTTTCTTAtctgtattcttttagaataccc-taatgtt-TCAGACAGTGATATTCTCTTGTTATTTCTAAGGCTAAATTGGCAGAGTATATCATCTAAAGCCAAACACTGAAGAAGGTGAGAACCCA-CTCCCAcccagccagCATTTCCTGGAACAGACAAGCTGCTGCTTCCTTGCTGGCTCACTTAGTGCATTCCTGGGATGGTCTGGCACCCA--GGCTTTTTATTCTTTTTGATCATTGTTCTTACTGAGGTGCCTTCCTAGAACAAGAGCCACTTA--CAAAATAGCTTATAATTATTATGTACCACACAACTACTATTGTTTGATGTATGACTGCTGAGAGCTTGAATACATGCAGAGAGTGACTGAAGACTTAGT--AGAGGAATAAATTCTGAGCCTGTCTAAGGTGGGGCTAAGGAACAGATGAGTAATAAGAG--GCTCTTGGATTTTTTTAACCAATGCAACTGACCCTTTCAATCAGTTTTC-TTTGAA-TTACATCTACAAGTTTTGTTCCACTCAGCTACCAGTCAACTAGGCATGC------TCCACAGTATCACAGGAAGAAGGTCAGAAATCTGGAACTGAAGCTAAAAGAAGTGAGGATGTAGAAGCCACATTCC-TCTCCAAGGTAGTGTGTGAAAGAACCGCCCCCTCTTGACAGGAGGATGACCGTCGCCATTCTTGCGTGGGACTGACTCACCCAGCT-GAGAGGAGGACCAATAGAAAGAAAATTCACATTTGAGTCCACCTCTCTCCCCCTTTTTCTGGCCTTCATTCATAAGATCTGGTTGTTTGGGCTGTAGGTGGCATAATTCATGTTTATTTTGGCCTCTGTCACATC----CAGTTTCTTTAGCTTTTAAGGTAAGCTTCTTTTGGCTTTTTTTCATATGTTCACCAAGCTAAAATTTAAAATAATAAGACCAGGTT--TCTCTCTGTAC-AAGTGGATTATAAACA-TTTTCACCAAATCATAACAATACTCCAGCTTTCCGGTCCGACTTCCTAGGAGCCTGGAGTTAGCAAAGGTTGTC-TCTGGATTTCATTCTCTGAGAATATCACAGAGCCTGGGAGAAGATGAATTTACATGAAATTGCAACATACACACCTTTTTATTTTCTGGTGTTAAGCTAGTTGTCTTTCCTACCTTACAAATCATGTTAGTTTTATGATTTGTTCCGCATGTTTTATGTTTATTGTAGAAATGTT--TATATAACATACGCTTTCCATATCAGGG-AAAATCATATCTGTTTAATAAATTGGCTATAACTTTAATATCTGTGGAC-AACTTGTAAAATTTGGAATGTATCATATGTAAAAAGTTTAAAGATATCCAAATAAATGCTTTAGGTGTTGGCATTA
s spliceWithGap 4645 2476 - 7262 AGACGGGGAAATCCTTTACAGTTTATGCAAAGAGCGATTCAAGAAGATCTTGT--GAAG-TCTGGCACCAACACAGTGTCACAG--------GCCTGACATGCACAGGAAGCCAATCAGACACTGGTTGGCATTGACTGGCAACATTTATAATTATTGCACCACCAAAA--CACAAACTTGGATTTTA--AACCCAGTTGGCTTTT-AAGAAAGAAAGAAGTTCTGCTGAATTTGGAAATAAATTCTTTATTTAAACTTTCCTTCCCAGTTTTATAGTTTCTGGTTCTGAGGACTGATGAAAATCATCTTCCATCAGCAGATTTTCTTGCACTGTTTGCTGTGCCCCCTCAAATATAATGTCTTGGGTTTTAAGATCGAGCAAGGAGCTTCTCTTCCTAGATTGGATCCCAGCCCCTT-GTGGGG-TCTGACTGCATAGTCCCAGCCATTATGTGATATTTCACGTTATTGATGATAGTGAACTGTGGGTCCGAAGCTGACTCAACGGAGGCAGGGAACAAAGTCTCTGTGGTCTGTTGGGTCATACTTCCTGGTTCCACTGAGTGGCCCAACACTGGGACTGGGTTGGTGTCCCCTCTGCTGACAGGACCCTACTCCTAGGAGCAAAGTGGTTGATTTTGAAGGCAGTGTTCCCTTCTCTCCATTGACTATGAGAGAGTTGGGGGACACACATGCAGAAGAAGCCCGTGGG-AGAAGGTGGATTCCCTGGTGTGTTAAGGTTTCTTTTTCAGGGCTGTTAGAGGTttttttctttttttttttttttttttATGGCAAGACTTTTGGCTTTTGAGAAACCTCACTTAGAGGGCTTTCC-AAAACTTAGGATGGTCTAAAaaaattat--tattcttttTAGAATTA-GAAG-aaaattaggatattctaaaagaatATGGATTAAaaatttaggatattc-tTTAGATATCCTAATATTCAGATGAGAGGCC-TCCTTCATAAGATCTGGTTGTTTGGGCTGTGGTTGGCATAAGTGATATTTATTCTGGCCTCTGTCACATCCAGTTTCTCTGAGCTTTTAAGGT--GCTTCTTTTGGCTTTTTTTCAGATGTTCACT--GCTTAAGTTTAAAATAATAGGTATTCTAAAAAGCAGCATCCTAATTTTCTTATCTTCATTC-TTTAGAATACCCTTAATGTTCTCAGACAGTGATAT--TCTTGTTATTTCTAAGGCTAAATTGGCAGAGTATATCATCTAAAGCCAAACACTGAAGAAGGTGAGAACCCATCTCCCACCCAGCCAGCATTTCCTGGAACAGACAAGCTGCTGCTTCCTTGCTGGCTCACTTAGTGCATTCCTGGGATGGTCTGGCACCCAGCGGTTTTTTATTC-TTTTGATCATTGTTCTTACTGAGGTGCCTTCCTAGAACAAGAGCCACTCAAGCAAAATAGCTTATAATTATTATGTACCACAC----ACTATTGTTTGATGTATGACTGCTGAGAGCTTGAATACATGCAGAGAGTGACTGAAGACATAGTTAAGAGGAATAAATTTTGAGCCCGTCTAAGGTGGGGCTAAGGAACAGATGAGTAATAAGAGGTGCTCTT-GA---TCTTAACCAATGCAACTGACCCTTTCAATCAGTTTTCTTTTGAATTTACATCTACAAGTTTTGTTCCACTCAGCTACCAGTCAACTAGGCATGCCCTTGGT---CAGTATCACAGGAAGAAGGTCAGGAATCT-GAACTGAAGCTAAAAGAAGTGAGGATGTAGAAGCCACATTCCTTCTTCAAGGTAGTGTGTGAAAGAACTGCCCCCTCTTGACAGGAGGATGACTGTCGCCATTCTGGTGTGGGACTGACTCACCCAGCTGGAGAGGAGGACCAATAGAAAGAAAATTCACATTTGAGTCCAC--CTCTCCCCCTTTTTCTGGCCTTCATTCATAAGATCTGGTTGTTTGGGCTGTAGGTGGTACAATTCATGTTTA-TTTGGCCCCTGT--CATCCTTACAGTTTCTTTAGCTTTTAAGGTAAGCTTCTTTTGGC-TTTTTTCATATGTTCACCAAGCTAAAATTTAAAATAATAAGACCAGGTTTCTCTCTCTGTACAAAG-GGATTATAAACATTTTTCACCAAATCATAACAATACTCCAGCTTTCCGGTCCGACTTCCTAGGAGCCTGGGGTTAGCAAAGGTTGTCTTCT-GATTTCATTCTCTGAGAATATCACAGAGCCTGGGAGAAGATGAATTTACATGAAATTGCAACATACACACCTTTTTATTTTCTGGTGTTAAGCTAGTTGTCTTTCCTACCTTACAAATCATGTTAGCCTTATGATTTGTTCCGCATGTTTTATGTTTGCTGTAGAAATGTTTCTATATAATATACGCTTTCCATATCAGGGAAAAATCATATCTGTTTAATAAATTGGCTATAACTTTAATATCTGTGGACAAACTTGTAAAATTT-GAATGTATCATATGTAAAAAGTTTAAAGATATCCAAATAAATGCTTTAGGTGTTGGCATTA
a score=1135 EG2=2e-92 E=8.3e-97
s chr6 42659653 202 + 170805979 AGCCCTGTGGCTTCAGATATGACACTTACAGCACTGGGCCCC-GCACAAACTCAGGTTCCTGAACAAAGACAATTCGTTACATGTATATTGTGTCAAGAGGAGCAAGAAGTTAAAGTGGAAAGCAGGGCAATGGTCTTGGCAGCATTTGTTCAGAGATCAACTGTATTATC-AAAAAACAGAAGTAAATTTATTCAAGATCCAG
s spliceWithGap 2758 204 - 7262 AGCCCTGTGGCTTCAGATATGACACTTACAGCACTGGGCCCCCACACAAACTCAGGTTCCTGAACAAAGACAATTCGTTACATGTATATTGTGTCAAGAGGAGCAAGAAGTTAAAGTGGAAAGCAGGGCAATGGTCTTGGCAGCATTTGTTCAGAGATCAACCGTATTATCAAAAAAACAGAAGTAAATTTATTCAAGATCCAG
a score=946 EG2=3.2e-74 E=1.3e-78
s chr6 42688215 167 + 170805979 GTGCCCGAAATCAGGTGGTGATAAGAGCAGAGCCCCAACTCTGTGCCTTGTGTGCGGATCTCTGCTGTGCTCCCAGAGTTACTGCTGCCAGACTGAACTGGAAGGGGAGGATGTAGGAGCCTGCACAGCTCACACCTACTCCTGTGGCTCTGGAGTGGGCATCTTCC
s spliceWithGap 4372 166 - 7262 GTGCCCGAAATCAGGTGGTGATAAGAGCAGAGCCCCAATCCTGTGCCTTGTGTGCGGATCTCTGCTGTGC-CCCAGAGTTACTGCTGCCAGACTGAACTGGAAGGGGAGGATGTAGGAGCCTGCACAGCTCACACCTACTCCTGTGGCTCTGGAGTGGGCATCTTCC
a score=842 EG2=3.3e-64 E=1.4e-68
s chr6 42663253 166 + 170805979 AAAGGTATTTTGATTCCGTTCAAGCTAAAGAACA--GCGAAGGCAACA-GAGATTACGCTTACATACGAGCTATGATGTAGAAAACGGAGAATTCCTTTGCCCCCTTTGTGAATGCTTGAGTAATA---CTGTTATTCCTCTGCTGCTTCCTCCAAGAAATATTTTTAACAA
s spliceWithGap 3050 170 - 7262 AAAGGTATTTTGATTCCGTTCAAGCTAAAGAACAAAGTGAAGGCAACAGGAGATTACGCTTACATACGAGCTATGATGTAGAAAACGGAGAATTCCTTTGCCCCCTTTGTGAATGCTTGAGCAA--GGCCTGTTATTCCTCTGTTGCTTCCTCCAAGAAATATTTTTAACAA
a score=813 EG2=2e-61 E=8.4e-66
s chr6 42670097 143 + 170805979 TTATTCTGAGAGCATAAAAGAAATGCTAACGACATTTGGAACTGCTACCTACAAGGTGGGACTAAAGGTTCATCCCAATGAAGAGGATCCTCGTGTTCCCATAATGTGTTGGGGTAGCTGCGCGTACACCATCCAAAGC-ATAG
s spliceWithGap 3406 143 - 7262 TTATTCTGAGAGCATAAAAGAAATGCTAACGACATTT-GAACTGCTACCTACAAGGTGGGACTAAAGGTTCATCCCAATGAAGAGGATCCTCGTGTTCCCATAATGTGTTGGGGTAGCTGCGCGTACACCATCCAAAGCGATAG
a score=780 EG2=3e-58 E=1.3e-62
s chr6 42632555 163 + 170805979 GAATGCTCATCACAGAAGAAAACTTAATGAGCATTATCATTAAGACTTTTATGGATCATTTGAG-ACATC-GAGATGCCCAGGGCAGATTTCAGTTTGAACGATACACTGCTTTACAAGCCTTCAAATTTAGGAGAGTACAGAGCCT-TATTTTAGATC---TCAAGTA
s spliceWithGap 681 166 - 7262 GAATGCTCATCACAGAAGAAA-CTTGATGAGCATTATCATTAAGACTTTTATGGATCATTTGAGGACATCTGAGATGCCCAGGGCAGATTTCAGTTTGAACGATACACTGCTTTACAAGCCTTCAA-CTTA-GAGAGTACAGAGCCTCTATTTTAGATCCTTTCAAGTA
a score=733 EG2=1e-53 E=4.2e-58
s chr6 42678536 133 + 170805979 AGTGCCTTGAAAGAAATACCATCCGGCTGGCATCTGTGGAGGAGTGTCAGAGCTGGAATCATGCCTTTCCTG-AAGTGTTCTGCTTTATTTTTTCATTACTTAAATGGAGTTCCTTCCCCACCCGACATTCAAG
s spliceWithGap 3995 131 - 7262 AGTGCCTTGAAAGAAATACCATCCGGCTGGCATCTGTGGAGGAGTGTCAGAGCTGGAATCATGCCTTTCCTGGAAGTGTTCTGCTTTATTTTTTCATTACTTAAATGGAGTTCCTT---CACCCGACATTCAAG
a score=707 EG2=3.2e-51 E=1.3e-55
s chr6 42676054 137 + 170805979 GGTGGGCTTGGTGCTTGCATT-TC-CTGCGTTGCAG------TGTCAGGATTTTTCAGGGATCAGCCTTGGCACTGGAGACCTTCACATTTTCCATCTGGTTACTATGGCACACATCATACAGATCTTACTTACCTCATGTACAG
s spliceWithGap 3764 143 - 7262 GGTGGGCTTGGTGCTTGCATTCTCTCTGCGTTGCAGCAAGTTTGT--GGATTTTTCAGGGATCAGCCTTGGCACTGGAGACCTTCACATTTTCCATCTGGTTACTATGGCACACATCATACAGATCTTACTTACCTCATGTACAG
a score=688 EG2=2.2e-49 E=9.1e-54
s chr6 42605721 139 + 170805979 gagaagaGTGACACCTACT----ATTGCATGCTGTTTAATGATGAGGTTCACACCTATGAACAAGTTATTTATACTCTT-CAGAAAGCTGTTAACTGTACAC--AAAAAG-AAGCTATTGGTTTTGCAACTACAGTAGATCGAGATG
s spliceWithGap 57 145 - 7262 GAGAAGAGTGACACCTACTCATTATTGCATGC-G-TTAATGATGAGGTTCACACCTATGAACAAGTTATTTATACTCTTTCAGAAAGCTGTTAACTGTACACAAAAAAAGAAAGCTATTGGTTTTGCAACTACAGTAGATCGAGATG
a score=678 EG2=2e-48 E=8.4e-53
s chr6 42637030 165 + 170805979 TTACAAGAAATGTCTCGCTGTACTGATGCAG-----TGTCATGGTGGTTATACTGATG--GTGAACAGCCAATCACACTAAGCATTTGTGGACATTCAGTGGAAACTATCAGATACTGTGTTTCCCAAGAAAAAGTTAGCATTCACCTCCCAGTTTCTCGCTT---ACTTGCAGG
s spliceWithGap 1095 174 - 7262 TTACAAGAAATGTCTCGCTGTACTGATGCAAACTACT-TCATGGTGGCGAGACCCATGCAGTGAACAGCCAATCACACTAAGCATTTGTGGACATTCAGTGGAAACCATCAGATACTGTGTTTCCCAAGAAAAAGTTAGCATTCACCTCCCAGTTTCTGGCTTTTCATTTGCAGG
a score=642 EG2=5.9e-45 E=2.4e-49
s chr6 42679721 111 + 170805979 AGTTCCTGGAACAAGCCATTTTGAACATTTATGTAGCTATCTTTCCCTACCAAACAACCTCATTTGCCTTTTTCAAGAAAA--TAGTGAGATAATGAATTCACTGATTGAAAG
s spliceWithGap 4124 113 - 7262 AGTTCCTGGAACAAGCCATTTTGAACATTTATGTAGCTATCTTTCCCTACCAAACAACCTCATTTGCCTTTTTCAAGAAAAAATAGTGAGATAATGAATTCACTGATTGAAAG
a score=620 EG2=7.7e-43 E=3.2e-47
s chr6 42635415 132 + 170805979 AGGGAATGGATCCAATTACACGTCAAGTAGGAC-AACATATTGAAATGGAACCAGAGTGGGAAGCAGCCTTC--ACACTACAAATGAAATTAACACATGTCA--TTTCAATGATGCAGGACTGGTGTGCTTCAGATG
s spliceWithGap 937 134 - 7262 AGGGAAGGGACCCAATTACACGTCA--TAG-ACAAACATATTGAAATGGAACCAGAGTGGGAAGCAGCCTTCTCACACTACAAATGAAATTAACACATGTCATTTTTCAATGATGCAGGACTGGTGTGCTTCAGATG
a score=565 EG2=1.5e-37 E=6.4e-42
s chr6 42662180 100 + 170805979 CAGAAAAATATGATCCATTATTCATGCACCCTGATCTGTCTTGTGGAACACACACTAGTAGCTGTGGGCACATTATGCATGCCCATTGTTGGCAAAGGTA
s spliceWithGap 2959 98 - 7262 CAGAAAAATATGATCCATTATTCATGCACCCTGATCTGTCTTGTGGAACACAC--TAGTAGCTGTGGGCACATTATGCATGCCCATTGTTGGCAAAGGTA
a score=551 EG2=3.4e-36 E=1.4e-40
s chr6 42615068 113 + 170805979 AGATGGCCTTCGCCGGATTTTATG-TCAAGTTGGTTTACAAGAAGGGCCAGATGGTGAAAACTCTTCTCTAGTGGACAGACTGATGCTTAGTGATTCCAAATTATGGAAAGGTG
s spliceWithGap 377 111 - 7262 AGATGGCCTTCGCCG-ATTTTATGCTCAAGTTGGTTTACAAGAAGGGCCAGATGGTG--AACTCTTCTCTAGTGGACAGACTGATGCTTAGTGATCTTAAATTATGGAAAGGTG
a score=547 EG2=8.2e-36 E=3.4e-40
s chr6 42612169 122 + 170805979 GAGAAATACCAGTAGACAGACAAAGCCACTCAAAGTTCAAGTTATGCATTCGTCTATTGTCGCACATCAGAATTTTGGTTTGAAACTTTT--GTCTTGGCTGGGAAGTATTATTGGATATTCAG
s spliceWithGap 262 117 - 7262 GAGAAATACCAGTAGA--GACA--GCCACTTAAAGTTC--GCTATGCATTCGTCTATTGTCGCACATCAGAATTTTGGTTTGAAACTTTTTTGTCTTGGCTGGGAAGTATTATT-GATATTCAG
a score=544 EG2=1.6e-35 E=6.7e-40
s chr6 42689566 104 + 170805979 AGAGTACGGGAATGTCAGGTGCTATTT-TTAGCTGGCAAAACCAAAGGCTGTTTTTATTCTCCTCCTTACCTTGATGACTATGGGGAGACCGACCA-GGGACTCAG
s spliceWithGap 4541 106 - 7262 AGAGTACGGGAATGTCAGGTGCTGTTTCTTAGCTGGCAAAACCAAAGGCTGTTTTTATTCTCCTCCTTACCTTGATGACTATGGGGAGACCGACCGTGGGACTCAG
a score=527 EG2=6.9e-34 E=2.9e-38
s chr6 42692915 151 + 170805979 GGCCTTCATTCATAAGATCTGGTTGTTTGGGCTGTAGG-TGGCATAATTCATGTTTATTTTGGCCTCTGTCACATCCAGTTTCTTT-AGCTTTTAAGGTAAGCTTCTTTTGGCTTTTTTTCATATGTTCACCAAGCTAAAATTTAAAATAATA
s spliceWithGap 5589 147 - 7262 GGCCTCC-TTCATAAGATCTGGTTGTTTGGGCTGT-GGTTGGCATAAGTGATATTTATTCTGGCCTCTGTCACATCCAGTTTCTCTGAGCTTTTAAGGT--GCTTCTTTTGGCTTTTTTTCAGATGTTCACT--GCTTAAGTTTAAAATAATA
a score=511 EG2=2.4e-32 E=1e-36
s chr6 42665408 96 + 170805979 CAGGTTAAATTTTTCAGACCAACCAAATCTGA-CTCAGTGGATTAGAACAATATCTCAGCAAATAAAAGCATTACAGTTTCTTAGGAAAGAAGAAAG
s spliceWithGap 3221 96 - 7262 CAGGTTAAATTTTTCAGACCAACCAAATCTGGGCTCAGTGGATTAGAACAATATCTCAGCAAATAAAAGCATTACAGTTTCTTAG-AAAGAAGAAAG
a score=492 EG2=1.6e-30 E=6.8e-35
s chr6 42684791 82 + 170805979 AGATATCCAAGAGAATCTAACAAATTAATAAACCTTCCAGAGGATTACAGCAGCCTCATTAATCAAGCATCCAATTTCTCGT
s spliceWithGap 4292 82 - 7262 agatatcCAAGAGAATCTAACAAATTAATAAACCTTCCAGAGGATTACAGCAGCCTCATTAATCAAGCATCCAATTTCTCGT
a score=489 EG2=3.1e-30 E=1.3e-34
s chr6 42632799 106 + 170805979 TTCAGGTATGTGTTAATTAGCAAACCAACTGAATGGTCAGATGAGCTGAGGCAGAAGTTCCTAGAAGGGTTTGATGCCTTTTTGGAATTACTAAAATGTATGCAGG
s spliceWithGap 839 101 - 7262 TTCAAGTATGTGTTAATTAGCAAACCAACTGAATGGTCAGATGAGCTGAGGCAGAAGTTCCC-GAAGGGTTTGATGCC-TTTTGGAATTACT-AAATGTA--CAGG
a score=456 EG2=4.7e-27 E=2e-31
s chr6 42615998 92 + 170805979 AAGGTGCTAGGAGTGTATATCATCAGTTGT--TCATGAGCAGTCTGCTTATGGATTTGAAATACAAGAAACTATTTGCTGTTCGATTTGCAAAA
s spliceWithGap 482 93 - 7262 AAGGTGCTAG-AGTGTATATCATCAGTTGCCCTCATGAGCAGTTTGTTTATGGATTTGAAATACAAGAAACTATTTGCTGTTCGATTTGCAAAA
a score=444 EG2=6.8e-26 E=2.8e-30
s chr6 42673789 98 + 170805979 GGATGACTGTCTTAGGTCATTGACGAGATTT--GCCGCAGCACACTGGACAGTGGCATCAGTTTCAGTGGTGCAAGGACATTTTTGTAAACTTTTTGCAT
s spliceWithGap 3603 94 - 7262 GGATGACTGTCTTAGGTCATTGACGAGATTTTTGCCGCAGCAC--TGGACAG---CACCAGTTTCAGTGGTGCAAGGACATTTTTGTAAACTTTT-GCAT
a score=438 EG2=2.6e-25 E=1.1e-29
s chr6 42674125 73 + 170805979 CACTGGTGCCTAATGACAGCCATGAGGAACTTCCATGCATATTAGATATTGACATGTTTCATTTATTGGTGGG
s spliceWithGap 3697 73 - 7262 CACTGGTGCCTAATGACAGCCATGAGGAACTTCCATGCATATTAGATATTGACATGTTTCATTTATTGGTGGG
a score=437 EG2=3.2e-25 E=1.3e-29
s chr6 42666167 77 + 170805979 TAATGCCTCTACAAAGAATTCAGAAAATGTGGATGAATTACAGCTCCCTGAAGGGTTCAGGCCTGATTTTCGTCCTA
s spliceWithGap 3327 76 - 7262 TAATGCCTCTACAAAGAATTCAGAAAATGT-GATGAATTACAGCTCCCTGAAGGGTTCAGGCCTGATTTTCGTCCTA
a score=415 EG2=4.2e-23 E=1.8e-27
s chr6 42676779 94 + 170805979 CAGAAGAGAATGGCATGGATCAAGAAAATCCCCCTTGTGAAGAAGAATCAGCAGTTCTTGCTTTGTATAAAACACTTCACCAGTATACGGGAAG
s spliceWithGap 3904 93 - 7262 CAGAAGAGAATGCCATGGATCAAGAAAAATCCCCTTGTGC-GAAGAATCAGCAGTTCTTGCTTTGTATAAAACACTTCACCAGTATACGGAAAG
a score=366 EG2=2.2e-18 E=9.2e-23
s chr6 42683050 61 + 170805979 AAAGTTGGTGCCGTAACAGTGAAGTTAAAAGATATCTAGAAGGTGAAAGAGATGCTATAAG
s spliceWithGap 4233 61 - 7262 AAAGTTGGTGCCGTAACAGTGAAGTTAAAAGATATCTAGAAGGTGaaagagatgctataag
a score=353 EG2=3.9e-17 E=1.6e-21
s chr6 42606588 63 + 170805979 GGGCGTAGGTCTGTTCGATATGGAGATTTTCAGTATTGTGAGCAAGCAAAATCAGTAATTGTG
s spliceWithGap 201 62 - 7262 GGGCGTAGGTCTGTTCGATAT-GAGATTTTCAGTATTGTGAGCAAGCAAAATCAGTAATTGTG
a score=344 EG2=2.9e-16 E=1.2e-20
s chr6 42617408 102 + 170805979 AACTATGAGCGTTTGCAGAGTGATTATGTGA---CAGATGACCACGACAGAGAGTTTTCAGTCGCAGACCTCTCGGTTCAGATA--TTCAC-GGTTCCTTCACTTGTA
s spliceWithGap 576 103 - 7262 AACTATGAGCGTTTGCAGAGTGATTACGTGATGTCAGATGACCACGACAGAG----TTAAAT-GCAGACCTCTCGGTCCAGATGGTTCCACAGGTTCCTTCACTTGTA
a score=342 EG2=4.5e-16 E=1.9e-20
s chr6 42658730 94 + 170805979 CTGAAATGCA-GCGGCATTTTA--TTGA---TGAAAACAAAGAACTCTTTCAGCAGACATTAGAACTGGATGCCTCAACCTCTGCTGTTCTTGATCATAG
s spliceWithGap 2662 98 - 7262 CTGAAATGCATGCAG-ATTTGAGTTTGAGGCTGAAAACAGTGAACT-TTTCAGCAGACATTAGAACTGGATGCCTCAACCTCTGCTGTTCTTGATCATAG
a score=335 EG2=2.1e-15 E=8.9e-20
s chr6 42670656 60 + 170805979 TAGAAAGAATTTTGAGTGATGAAGATAAACCATTGTTTGGTCCTTTACCTTGCAGACTGG
s spliceWithGap 3546 59 - 7262 TAGAAAGAATTTTGAGTGATGAAGATAAACCATTGTTTG-TCCTTTACCTTGCAGACTGG
a score=229 EG2=3.4e-05 E=1.4e-09
s chr2 214812952 46 + 242193529 aaaaaaaaaaaaaaaaaaaacacaaaaggaaaagaaagaaaaagaa
s spliceWithGap 7120 45 - 7262 Aaaaaaaaaaaaaaaaaaaacacaaaaggaaaa-aaaaaaaaagAA
a score=208 EG2=0.0036 E=1.5e-07
s chr6 42640198 42 + 170805979 tttcat--GCA-GGTTTACATGTATTATTAAGCAAAAGTGAAGTG
s spliceWithGap 1256 45 - 7262 TTTCATTTGCAGGGTTTACATGTATTATTAAGCAAAAGTGAAGTG
a score=180 EG2=1.8 E=7.5e-05
s chr10 13638294 30 + 133797422 ttttctttttttttttttttttttATGGCA
s spliceWithGap 5394 30 - 7262 ttttctttttttttttttttttttATGGCA
a score=175 EG2=5.3 E=0.00023
s chr5 144727932 34 + 181538259 tttttttctttttttttttttttttttttggcaa
s spliceWithGap 5391 34 - 7262 TttttttctttttttttttttttttttATGGCAA
a score=175 EG2=5.3 E=0.00023
s chr9 89531443 34 + 138394717 Aaaaaaaaaaaaaaaaaaacaccaaaggaaaaaa
s spliceWithGap 7121 34 - 7262 aaaaaaaaaaaaaaaaaaacacaaaaggaaaaaa
a score=174 EG2=6.7 E=0.00028
s chr2 182431117 29 + 242193529 cattaaaaaaaaaaaaaaaaaaaacacaa
s spliceWithGap 7116 29 - 7262 CATTAaaaaaaaaaaaaaaaaaaacacaa
a score=172 EG2=10 E=0.00044
s chr11 132048811 32 + 135086622 ttttttctttttttttttttttttttaTAGCA
s spliceWithGap 5392 32 - 7262 ttttttctttttttttttttttttttATGGCA
a score=170 EG2=16 E=0.00069
s chr22 36880353 32 + 50818468 aaaaaaaaaaaaaaaaacacaagaggaaaaaa
s spliceWithGap 7123 32 - 7262 aaaaaaaaaaaaaaaaacacaaaaggaaaaaa
a score=170 EG2=16 E=0.00069
s chr8 69767889 40 + 145138636 AAAAAAaaaaaaaaaaaaaaaacaaaaagaaaaagaaaaa
s spliceWithGap 7120 40 - 7262 Aaaaaaaaaaaaaaaaaaaacacaaaaggaaaaaaaaaaa
a score=169 EG2=20 E=0.00086
s chr12 42640460 33 + 133275309 Aaaaaaaaaaaaaaaaaacagaaaaggaaaaaa
s spliceWithGap 7122 33 - 7262 aaaaaaaaaaaaaaaaaacacaaaaggaaaaaa
a score=169 EG2=20 E=0.00086
s chr3 89854073 34 + 198295559 agaggtttttttctttttttttttttttcctttt
s spliceWithGap 5386 32 - 7262 AGAGGTttttttcttttttttttttttt--tttt
a score=166 EG2=39 E=0.0017
s chr9 94409129 35 + 138394717 tttttttttttttttttttttttttttaaGGCAAG
s spliceWithGap 5391 35 - 7262 TttttttctttttttttttttttttttATGGCAAG
a score=162 EG2=95 E=0.004
s chr7 29009180 27 + 159345973 TGGCATTAaaaaaaaaaaaaaaaaaaa
s spliceWithGap 7113 27 - 7262 TGGCATTAaaaaaaaaaaaaaaaaaaa
a score=160 EG2=1.5e+02 E=0.0063
s chr6 89978622 41 + 170805979 GTGTTGGCTttaaaaaaaaaaaaaaaaaaaa---aaaaGCaaaa
s spliceWithGap 7109 44 - 7262 GTGTTGGCATTAaaaaaaaaaaaaaaaaaaacacaaaaggaaaa
# Query sequences=1
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