File: asymmetric.mat

package info (click to toggle)
last-align 1651-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 14,692 kB
  • sloc: cpp: 44,419; python: 5,217; ansic: 1,938; sh: 710; makefile: 457
file content (18 lines) | stat: -rw-r--r-- 416 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
 
# This matrix is completely made up, for testing only.  It is derived
# from these joint probabilities:
#    a    c    g    t
# a .17  .015 .015 .05 | .25
# c .09  .06  .01  .09 | .25
# g .09  .01  .06  .09 | .25
# t .05  .015 .015 .17 | .25
#   -------------------
#   .4   .1   .1   .4
#
# Some gap costs:
#last -a500 -b50

    a   c   g   t
a  53 -51 -51 -69
c -11  88 -92 -11
g -11 -92  88 -11
t -69 -51 -51  53