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# LAST version 1243
#
# a=21 b=1 A=27 B=1 F=-2,0,-3,0 e=165.797 d=70 x=165 y=42 z=165 D=1e+09 E=18.1715
# R=01 u=2 s=2 S=0 M=0 T=0 m=500 l=1 n=500 K=1 k=1 w=1000 t=4.24284 j=3 Q=0
# ../aant/hg38/last/rmsk-hg38
# Reference sequences=38335 normal letters=27515653
# lambda=0.235691 K=1.69939
#
# AAA AAC AAG AAT ACA ACC ACG ACT AGA AGC AGG AGT ATA ATC ATG ATT CAA CAC CAG CAT CCA CCC CCG CCT CGA CGC CGG CGT CTA CTC CTG CTT GAA GAC GAG GAT GCA GCC GCG GCT GGA GGC GGG GGT GTA GTC GTG GTT TAA TAC TAG TAT TCA TCC TCG TCT TGA TGC TGG TGT TTA TTC TTG TTT
# A -7 -5 -7 -6 3 3 1 3 -6 -3 -6 -2 -2 -3 -2 -4 -7 -6 -5 -6 -1 -1 -3 -1 -5 -4 -7 -5 -5 -6 -4 -5 -2 -2 -3 -3 9 9 7 10 -1 0 -2 1 4 4 4 4 -5 -9 -6 -8 2 1 0 1 -8 -7 -11 -6 -4 -6 -2 -5
# C -11 -4 -11 -5 -7 -4 -11 -5 -8 2 -7 2 -9 -6 -11 -8 -7 1 -6 2 -12 -7 -9 -7 -1 8 -2 8 -10 -6 -6 -4 -12 -6 -10 -6 -6 -6 -29 -5 -8 3 -6 1 -10 -6 -7 -6 -2 5 0 6 -6 -1 -4 0 3 13 1 13 -7 0 -6 1
# D -4 4 -3 4 -9 -3 -7 -4 -7 0 -7 1 -12 -7 -9 -8 -4 1 -5 0 -10 -7 -10 -6 -27 -1 -6 -3 -15 -9 -14 -10 2 11 3 10 -7 -1 -3 -1 -2 5 -2 5 -6 0 -6 -1 -2 1 -3 0 -9 -5 -16 -6 -8 -3 -12 -4 -13 -8 -10 -10
# E 2 -2 1 -1 -5 -8 -8 -6 -3 -4 -4 -5 -7 -12 -7 -12 0 -5 0 -5 -8 -9 -11 -11 -2 -11 -5 -9 -10 -13 -10 -11 9 3 8 4 -1 -6 -1 -6 2 -2 2 -1 -2 -6 -3 -7 3 -6 0 -5 -9 -9 -9 -8 -4 -9 -10 -8 -9 -14 -8 -12
# F -17 -9 -16 -8 -11 -6 -7 -6 -16 -8 -13 -8 -8 -2 -6 -2 -10 -3 -10 -1 -12 -5 -8 -6 -11 -5 -4 -1 -4 3 -2 2 -18 -11 -18 -11 -9 -10 -11 -7 -13 -10 -12 -9 -6 1 -7 -1 -6 2 -4 3 -6 1 -2 1 -7 1 -8 2 2 11 2 11
# G -4 -3 -3 -3 -6 -6 -5 -6 4 3 3 3 -8 -10 -8 -9 -4 -5 -4 -3 -10 -7 -3 -7 0 2 2 0 -13 -13 -14 -13 3 1 3 2 -1 0 1 -1 11 10 10 10 -1 -1 -2 -2 -2 -7 -4 -6 -10 -7 -8 -6 1 -2 -3 -1 -10 -13 -11 -10
# H -6 0 -5 0 -8 -4 -25 -4 -9 -3 -6 -1 -13 -9 -11 -9 3 11 3 11 -5 1 -1 0 -1 7 2 9 -6 -1 -8 -1 -7 -2 -4 -1 -10 -6 -4 -6 -7 -3 -6 -2 -11 -5 -10 -5 -1 6 0 6 -7 -1 -3 -2 -3 2 -6 4 -8 -3 -9 -3
# I -5 -5 -8 -4 1 1 1 2 -4 -2 -6 -2 7 7 3 7 -9 -10 -10 -9 -7 -8 -8 -9 -6 -6 -21 -7 1 -1 -2 -1 -11 -11 -10 -9 -4 -5 -2 -4 -8 -8 -9 -7 4 3 1 3 -6 -8 -8 -9 -6 -8 -7 -7 -7 -7 -15 -9 0 -3 -2 -2
# K 7 1 7 1 -1 -5 0 -5 3 -2 2 -1 -3 -10 -3 -8 0 -5 -1 -5 -7 -10 -4 -10 -2 -8 -5 -5 -8 -13 -10 -13 -1 -7 0 -6 -6 -9 -5 -8 -3 -8 -4 -6 -6 -10 -7 -9 2 -9 -1 -8 -7 -10 -12 -10 -3 -9 -8 -10 -6 -14 -9 -10
# L -10 -10 -10 -11 -5 -7 -2 -4 -9 -8 -8 -8 0 0 1 0 -4 -2 -2 -2 -1 -1 3 -1 0 0 -3 -1 7 7 7 7 -12 -12 -10 -13 -8 -6 -1 -6 -11 -11 -8 -10 0 -1 0 -1 -3 -4 -4 -5 -2 -4 1 -4 -2 -4 -5 -3 7 3 6 3
# M -6 -7 -2 -6 1 -3 7 -3 -4 -6 1 -6 4 1 11 2 -7 -8 -5 -9 -6 -8 -1 -9 -4 -10 -8 -3 0 -2 4 -2 -8 -12 -4 -10 -3 -5 2 -5 -10 -8 -4 -10 1 -3 6 -2 -5 -9 -3 -10 -4 -8 2 -8 -6 -12 -6 -8 1 -5 5 -3
# N 0 9 1 9 -5 1 -3 0 -3 5 -2 5 -7 -3 -7 -3 -3 1 -5 1 -9 -6 -11 -6 -6 -2 -5 -3 -14 -9 -13 -9 -4 2 -3 2 -8 -4 -9 -6 -6 -1 -6 -1 -9 -5 -9 -7 -2 -1 -5 0 -9 -5 -29 -6 -6 -4 -11 -4 -10 -9 -13 -7
# P -9 -9 -11 -9 -2 -2 -3 -1 -10 -9 -7 -7 -7 -8 -8 -8 -1 -1 -4 -2 10 10 9 10 1 2 0 2 4 2 2 2 -11 -8 -12 -9 -1 0 1 -1 -10 -7 -8 -8 -5 -6 -5 -6 -3 -5 -8 -5 5 5 4 5 -1 -3 -8 -4 -2 -3 -3 -3
# Q -1 -4 0 -4 -6 -5 -6 -7 -4 -5 -3 -6 -10 -12 -7 -11 10 2 10 3 0 -4 2 -5 6 0 4 1 -2 -8 -2 -7 0 -3 1 -5 -7 -9 -7 -6 -4 -6 -3 -8 -7 -8 -6 -9 6 -2 5 -2 -3 -4 -1 -5 2 -4 -2 -5 -3 -9 -4 -8
# R 2 -4 3 -3 -1 -6 -1 -6 9 1 8 2 -3 -9 -3 -8 2 1 2 0 -7 -5 -6 -5 6 4 5 3 -8 -7 -8 -8 -4 -8 -4 -8 -7 -8 -3 -7 1 -4 2 -3 -7 -10 -6 -8 0 -5 -1 -4 -6 -7 -6 -6 5 1 -1 0 -6 -9 -7 -8
# S -6 0 -5 -1 0 2 -1 2 -3 6 -3 5 -5 -3 -5 -4 -5 -3 -4 -3 0 2 -1 1 -5 0 -4 -1 -5 -5 -4 -4 -6 -5 -6 -4 0 1 -1 1 -5 0 -4 -1 -5 -4 -4 -4 -1 -2 -4 -3 8 8 7 8 -1 0 -7 -1 1 0 1 0
# T -3 -2 -3 -2 7 7 6 7 -2 1 -3 0 2 1 1 1 -5 -5 -5 -6 -2 -2 -2 -1 -5 -7 -4 -4 -4 -6 -3 -6 -6 -6 -6 -6 3 1 2 2 -5 -5 -6 -6 0 -1 0 -1 -4 -8 -6 -6 2 0 1 1 -5 -5 -12 -7 -3 -6 -3 -5
# V -7 -6 -8 -7 -1 0 -1 1 -5 -5 -5 -4 3 4 2 4 -9 -6 -6 -7 -7 -5 -5 -5 -4 -7 -6 -5 -1 -2 -1 -1 -4 -5 -3 -4 1 2 4 2 -3 -3 0 -2 8 9 9 9 -5 -11 -6 -8 -5 -7 -3 -6 -7 -7 -11 -7 0 -3 -1 -1
# W -14 -18 -7 -13 -16 -15 -7 -14 -6 -9 1 -9 -13 -23 -10 -13 -5 -7 3 -5 -11 -14 -2 -26 4 -4 10 -1 -9 -10 -4 -11 -12 -14 -4 -19 -14 -12 -5 -19 -5 -9 4 -8 -12 -18 -7 -14 2 -3 11 -2 -3 -11 5 -8 10 4 14 4 -3 -9 4 -5
# Y -11 -2 -11 -2 -14 -7 -9 -8 -15 -5 -11 -4 -13 -9 -10 -8 -5 5 -3 6 -10 -6 -7 -5 -11 2 -4 3 -9 -4 -9 -5 -12 -4 -11 -2 -11 -9 -28 -8 -15 -7 -10 -5 -13 -5 -10 -8 3 11 4 11 -8 0 -6 0 -3 5 -5 6 -6 3 -5 2
# * -27 -29 -25 -27 -29 -28 -30 -28 -20 -19 -17 1 -28 -29 -28 -29 0 -20 5 -29 -29 -29 -29 -27 9 -29 4 -29 -25 -29 -26 -29 -24 -29 -28 -29 -29 -28 -29 -29 4 -29 -25 -25 -28 -30 -28 -30 14 -5 10 -12 -26 -29 6 -29 14 -27 -3 -8 -10 -29 -29 -29
# X 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
#
# Coordinates are 0-based. For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# batch 0
a score=3177.2 EG2=0 E=0
s UN-L1MA6_pol#LINE/L1 657 616 + 1275 GlnGlyCysProLeuSerProLeuLeuPheAsnIleValLeuGluValLeuAlaArgAlaIleArgGlnGluLysGluIleLysGlyIleGlnIleGlyLysGluGluValLysLeuSerLeuPheAlaAspAspMetIleLeuTyrIleGluAsnProLysAspSerThrLysLysXaa-LeuGluLeuIleAsnGluPheSerLysValAlaGlyTyrLysIleAsnIleGlnLysSerValAlaPheLeuTyrAlaAsnSerGluLeu-SerGluLysGluIleLyslysthrilepropheThrIleAlaThrLysLysIleLys--TyrLeuGlyIleAsnLeuThrLysGluValLysAspLeuTyrXaaGluAsnTyrLysThrLeuMetLysGluIleGluGluAspThrAsnLysTrpLysAspIleProCysSerTrpIleGlyArgIleAsnIleValLysMetSerIleLeuProLysAlaIleTyrArgPheAsnAlaIleProIleLysIleProMetThrPhePheThrGluIleGluLysThrIleLeuLysPheValTrpAsnHisLysArgProArgIleAlaLysAlaIleLeuSerLysLysAsnLysAlaGlyGlyIleThrLeuProAspPheLysIleTyrTyrLysAlaIleValThrLysThrAlaTrpTyrTrpHisLysAsnArgHisIleAspGlnTrpAsnArgIleGluSerProGluIleAsnProArgIle--TyrSerGlnLeuIlePheAspLysGlyAlaLysAsnThrGln--TrpGlyLysAspSerLeuPheAsnLysTrpCysTrpGluAsnTrpIleSerThrCysArgArgMetLysLeuAspProTyrLeuSerProTyrThrLysIleAsnSerLysTrpIleLys-AspLeuAsnValArgProGluThrMetLysLeuLeuGluGluAsnIle-GlyGluMetLeuHisAspIleGlyLeuGlyLysAspPheLeuAspLysThrSerLysAlaGlnAlaThrLysAlaLysIleAspLysTrpAspTyrIleLysLeuLysSerPheCysThrAlaLysGluThr-IleAsnArgValLysArgGlnProThrGluTrpGluLysIlePheAlaAsnTyrAlaSerAspLysGlyLeuIleSerArgIleTyrLysGluLeuLysGlnLeuAsnSerLysLysThrAsnAsnProIleXaaLysTrpAlaLysAspLeuAsnArgHisPheSerLysGluAspIleGlnMetAlaAsnArgTyrMetLys-LysCysSerThrSerLeuIleIleArgGluMetGlnIleLysThrThrMetArgTyrHisLeuThrProValArgMetAlaIleIleLysLysThrLysAspAsnLysCysTrpArgGlyCysGlyGluLysGlyThrLeuThrHisCys--TrpTrpGluCysLysLeuValGlnProLeuTrpLysThrValTrpArgPheLeuLysLysLeu--LysIleGluLeuProTyrAspProAlaIleProLeuLeuGlyIleTyrProLysGluMetLysSerValCysArgArgAspIleCysThrProMetPheIleAlaAlaLeuPheThrIleAlaLysIleTrpAsnGlnProLysCysProSerThrAspGluTrpIleLysLysMetTrpTyrIleTyrThrMetGluTyrTyrSerAlaIleLysLysAsnGluIle-LeuSerPheAlaThrThrTrpMetAsnLeuGluAspIleMetLeuSerGluIleSerGlnAlaGlnLysAspLysTyrArgMetIleSerLeuIleCysGly
s chrUn_KI270748v1 13904 1811 + 93321 CAAGGGTGCCCACTCTCAGAACTTCTATTCAACATAGTACTGGATGTCCTAGCCAGAGCAATTAGGCAAAAGAAAGaaaTAAAAGGCATGAAAATTGGAAAGGAAGAAGTTAAATTGTTTCTGTTTGCAGTTGACATGATCTTATATATAGAAAACACCAATAACTCTGCCAAAAAA---TTTAGAATTCATAAATGAATTTAGTAAAGTTGCAGGATACAATGTGAACATACAAAATTCAGTAGCATTTCTACACATCAACAACAAACTATACAAAAAAagaaatcaagaaaacaATCCTATTTATAATAGCAACAAAA---------AATACTTAGATGTAAATTTAAACAAAGAGGTGAATGATCTTTACACTGAAAACTACAAAACATTGATGAAAACAATTGAAGAAGCCACAAATAAATGGAAAGATATCTCATGTTCATGGATTGGAAAAAGTAATATGTTTGAAATGTCCATACTATCCAAAGTGATGTACATATTGAATGCAATCTCTATCAAAATTCCTATGACATTTTCCCACAGAAATAGAAAAACAACTCTCAAATCTGTATGGAATCACAAAAAACTCTGAAAAGCCAAAATAATCTTGATCGAAAAAAGCAAGGCAGGAGATATCACATTACCTGACTTCAAATTATACTACATAGCTATAGCAATCGAAACACCATGGTACTGGCATAAACGCAGACACATAGACCAATTACACAGAATAAAGAGCCCATAAATAAATCTACAT---ATTATAGTCAATTGACTTTCAACAAAGGTGCCAGGAACACA---CATGGGGAAAGAACAGTCTCTTCAAAAAATGGTGTTGAGAAAACTGAATGTCCACA------AGATTGATCTTAGGCCCTTATTTCATACCATATAAAAATATAAATTCAAAATAAGTT---AGACTTAAATGTAAGACCTAGCACTATAGAACTCCTAGAAGAAAAC---AGGGGAATAACTCCAAGACATTGGTCTGGGCAATAATATTTTATGATATGACTCTAAAGCACAGGCAAGAAAAGCAACAAAACACAAATGGAATAGCATCAACCTAAAAAGCTTCTGCGCAGCAAAAGAA---AGTCAACAGAGTGAAGTGATAACCTACAAAATGGGAGGAATTATCTGCAAACTATACATTTGATAAGAGGCTAATGTCCAAAATATCTTAGGAACTCAAACAACACAataataagaaAACAAGGAACCCTAATGAAAAATTGACAAAGGATCTAAATAGACATTTCTCAAAAGAAGACATACAAATGGCCAACAGATATATA---AAAATGCTAATTATCACTGATCATCAGAGAAATGCATATTAAAACTACAATAAAATGCCATTTCACATCCGTTAGAATGGCTGTTACAGAAAAGGCAGAAGATACCAAGTGTTGGAGAGGATGTGGAGAAAAGGAAAACCTTGTA------ATTGTTGAGAATGTAAACTATTTCAGCCATTGTAAAAGACAGTATAAGTGATTCTG---------TAAAAATAGAATTACCATATGATTCAGTAATGCTATTTCTGGGCATATATTAAAAAGATATCAAATCAGTGTGTCAATGAGTTATCTGTACTCCCATATTTATTGTAGCATTATTCACAACAGCCAAGATGTGGAATTAACTTAAGTATCCATCGACACATGAGTGGATGAAGAAAATGTGGTACACATACACAATAGAATAGTATACAACCTTAaaaaataaaaaa---aGTATCATTTGTGACAACATGAATGAACCGGGAGGACATTATACTGAGTAAAATAATCCAGGCACAGAAAGCCAGATACTGCATAATCTCACTTGTATGTGGA
a score=1775.7 EG2=2.9e-164 E=1.5e-169
s UN-L1PA2_pol#LINE/L1 1048 227 + 1276 LeuIleSerArgIleTyrAsnGluLeuLysGlnIleTyrLysLysLysThrAsnAsnProIleLysLysTrpAlaLysAspMetAsnArgHisPheSerLysGluAspIleTyrAlaAlaLysLysHisMetLysLysCysSerSerSerLeuAlaIleArgGluMetGlnIleLysThrThrMetArgTyrHisLeuThrProValArgMetAlaIleIleLysLysSerGlyAsnAsnArgCysTrpArgGlyCysGlyGluIleGlyThrLeuLeuHiscystrptrpaspcyslysLeuValGlnProLeuTrpLysSerValTrpArgPheLeuArgAspLeuGluLeuGluIleProPheAspProAlaIleProLeuLeuGlyIleTyrProLysAspTyrLysSerCysCysTyrLysAspThrCysThrArgMetPheIleAlaAlaLeuPheThrIleAlaLysThrTrpAsnGlnProLysCysProThrMetIleAspTrpIleLysLysMetTrpHisIleTyrThrMetGluTyrTyrAlaAlaIleLysAsnAspGluPheMetSerPheValGlyThrTrpMetLysLeuGluIleIleIleLeuSerLysLeuSerGlnGluGlnLysThrLysHisArgIlePheSerLeuIleGlyGlyAsn
s chrUn_KI270748v1 3859 681 + 93321 CTAATATCCGGAATCTACAATGAACCCAAACAAATTTACAAGAAaaaaacaaacaaCCCCATCAAAAAGTGGGCAAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCACTATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTTACACCAGTTAGAATGGCCATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACATTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGTGATTCCGCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTACTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAATCCAAATGTCCAACAATGATAGACTGGATTAAGAAAACGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACAATCACAAGGACAAAAAACCAAACACCGCATGTTCTCACTCATAGGTGGGAAT
a score=1607.4 EG2=5e-147 E=2.5e-152
s UN-L1MA6_pol#LINE/L1 517 362 + 1275 LysProAspLysAspThrThrLysLysGluAsn--TyrArgProIleSerLeuMetAsnIleAspAlaLysIleLeuAsnLys--IleLeuAlaAsnArgIleGlnGlnHisIleLysLysIle--IleHisHisAspGlnVal--GlyPheIleProGlyMetGln-GlyTrpPheAsnIleArgLysSerIleAsnValIleHisHisIleAsnArgMetLysAspLysAsnHisMetIleIleSerIleAspAlaGluLysAlaPheAspLysIleGlnHisProPheMetIleLysThrLeuAsnLysLeuGlyIleGluGlyThrTyrLeuAsnThrIleLysAlaIleTyrAspLysProThrAlaAsnIleIleLeuAsnGlyGluLysLeuLysAlaPheProLeuArgSerGlyThrArgGlnGlyCysProLeuSerProLeuLeuPheAsnIleValLeuGluValLeuAlaArgAlaIleArgGlnGluLysGluIleLysGly-IleGlnIleGlyLysGluGluValLysLeuSerLeuPheAlaAspAspMetIleLeuTyrIleGluAsnProLysAspSerThrLysLysLeuLeuGluLeuIleAsnGluPheSerLysValAlaGlyTyrLysIleAsnIleGlnLysSerValAla-PheLeuTyrAlaAsnSerGluLeuSerGluLysGlu-IleLyslysthrilepropheThrIleAlaThrLysLysIle------------------------------LysTyrLeuGlyIleAsnLeuThrLysGluValLysAspLeuTyrXaaGluAsnTyrLysThrLeuMetLysGlu-IleGluGluAspThrAsnLysTrpLysAspIleProCysSerTrpIleGlyArgIleAsnIleValLysMetSerIleLeuProLysAlaIleTyrArgPheAsnAlaIleProIleLysIleProMetThrPhePheThrGluIleGluLysThrIleLeuLysPheValTrpAsnHisLysArgProArgIleAlaLysAlaIleLeuSerLysLysAsnLysAlaGlyGlyIleThrLeu-ProAspPheLysIleTyrTyrLys
s chrUn_KI270748v1 89660 1085 - 93321 aaggcaaacaAGGACACTATAAGAAAAGTA---TGGGCCAACCAATATCCCTGATGAACACAGATACAAAAGTCCTCAAAAAAAAGTACTAGCAAACAGAATTTAACAACATATTAGGAGA---ACATTTACCATGATAAA---GTGGATTTATCCTC---------CAGATGTTTCAGCAAACACAAATCA---AATGTGATAAACCACATTAACAGAATGAAGGATAAAAAA---ATAGCTATCTCTATATATGCAGAAAAAGCATTTGACTAAATTCAAAATCCTCTCATGACTAAACCTCTCAACAAATTGGGCATAGAAGGCATGTACCTTAACACAAAACAGGACATATATAACAAGCTCACAGCTCACATCATACCCAACAATGAAAAAGTGAAATCTTTTCTGCTAAGATCAAAAACAAGACAAGGATATTTATTCTCACTACTTCTATTCAACTTATTTCTGGAAGTCCTAGCCAGAGCAATTAAGCCAAATAAAGAAATAAAA---TATTCAAATTGAAAAGGaagaagtaaaaTTGTCTCTGTTTGATGAC------ATATTATATATAGGAAACCCTAAAAACTCCACCAAAAAGCTATTAGAAATGATAAATGAATTCAATAAAATTTCAGAATTCAAAATCAATGTACAAAACTCAGTA---GTTTCTTTACACTCACAACAAACTATATGACAAA---AATAAAGAAATCAATCTCATTCACAGTAGCATCAAaaaaaacgtattttttttGTTTAGGAGCACATTTAGGATAGTACttaggagtacatttaACCAAGGAGGTGAAAGATCTGTATTCTGAACACTATAAAACATTGATGAAA---AATTGTAGATGACACAAATACATGGAAAGATATTTTATGTTCATGGGTAGGAAGAATTAATATTCTTAAAATGTCCTTACTGCCCAAAGCGATTTATAGGTTTAATGCAATATTTATCAAAATTTCAATGTCATTCTTCACAGAAATAGAAAAAACAATTTGAAAATTTATATGGAACCACAAAGGATCCTGAATAACTAAAGGACTCTTGAGCAATAAGAACAAAGCTGAAGGCCTCACA---ATCTGACTTCAAAACATATTACAGG
a score=1559.7 EG2=3.8e-142 E=2e-147
s UN-L1MA6_pol#LINE/L1 883 281 + 1275 LysThrAlaTrpTyrTrpHisLys--AsnArgHisIleAspGlnTrpAsnArgIleGluSerProGluIleAsnProArgIleTyrSerGlnLeuIlePheAspLysGlyAlaLysAsnThrGlnTrp-GlyLysAspSerLeuPheAsnLysTrpCysTrpGluAsnTrpIleSerThrCysArgArgMetLysLeuAspProTyrLeuSerProTyrThrLysIleAsnSerLysTrpIleLysAspLeu-AsnValArgProGluThrMetLysLeuLeuGluGluAsnIleGlyGluMetLeuHisAspIleGlyLeuGlyLysAspPheLeuAspLysThrSerLysAlaGlnAlaThrLysAlaLysIleAspLysTrpAspTyrIleLysLeuLysSerPheCysThrAlaLysGluThrIleAsnArgValLysArgGlnProThrGluTrpGluLysIlePheAlaAsnTyrAlaSerAspLysGlyLeuIleSerArgIleTyrLys--GluLeuLysGlnLeuAsnSerLysLysThrAsnAsnProIleXaaLysTrpAlaLysAspLeuAsnArgHisPheSerLysGluAspIleGlnMetAlaAsnArgTyrMetLysLysCysSerThrSerLeuIleIleArgGluMetGlnIle-LysThrThrMetArgTyrHisLeuThrProValArgMetAlaIleIleLysLysThrLysAspAsnLysCysTrpArgGlyCysGlyGluLysGlyThrLeuThrHisCysTrp--TrpGluCysLysLeuValGlnProLeuTrpLysThrVal--TrpArgPheLeuLysLysLeuLys
s chrUn_KI270748v1 3232 818 - 93321 TaatcagcctggtaatcaCGT---AAAACAGACACATAGACCAGTGGAACAGAATAGAGAACCCAGATATAAATCCACACATTTACAGCCAGCTCATCTTCAGCAAAGGCACCAACAACATACGA---GCGAAAGGACGGTCTCTTCCATAAGTGGTGCAGGGGAAACTAGATAAAGATATGCAGAAGAATGAAACTAGACCCGTCTCTCTTACCATACACAGAAATCAAATCAGAATGGATTAAAGGT---AAAACTGAGACCTGAAAGTATAAAACTACTGGAAGAAAACATTAGGGAAGTGCTCCAGGACATTGTTCTCAGCAAAGACTTTTTCAGTAGGGCCCCAAAAGCACAGGCAACCAAAGCAAAAACAGACAAGTGAAATCACACCAAGCTAAGAACCCTCTGCAGACCAAAGGAAAAAGTCAACAAACTGAAGAGACAACCCACAGAATGGGAGAAAATACTTGCAAGCTACCCACCTGACAAGGGATTCATAACC------------AGGAGCTCAAACAA---------TAGCAAACAATTAATCGAATTTTAAAATGGGCAAGAGACCTGAGTAGACATTTCTCAAAAGAAGATGTACAAATGGCCAGCAGGTACATGAAAAAATGCTCAACATCACTAATCATCAGAGAAACGCAAATAAAAAACTGCAATGAGGTCTTCTCTCACCTCAGTTAAAATGGCTTTCGTCAAAAACGCAGGGAATAAGGGATGCTGGCGAGGATGTGGAGAAAGGGGGACCCTCACACACTGT---TGTGGGAACGTTGATTAGTACAACCACTATGGAAAACA---GATGGAGGCTCCTCAaaaaaccaaaa
a score=1508.0 EG2=7.4e-137 E=3.8e-142
s UN-L1PA16_pol#LINE/L1 526 338 + 1276 LysGluAsnTyrArgProIleSerLeuMetAsnIleAspAlaLysIleLeuAsnLysIleLeuAlaAsnArgIleGlnGlnHisIleLysLysLeuIleHisHisAspGlnValGlyPheIleProGlyMetGlnGlyTrpPheAsnIleArgLysSerIleAsnValIleHisHisIleAsnArgIleLysAsnLysAsnHisMetIleIleSerIleAspAlaGluLysAlaPheAspLysIleGlnHisProPheMetIleLysThrLeuXaaLysLeuGlyIleGluGlyThrTyrLeuLysIleIleArgAlaIleTyrAspLysProThrAlaAsnIleIleLeuAsnGlyGlnLysLeuGluAlaPheProLeuArgThrGlyThrArgGlnGlyCysProLeuSerProLeuLeuPheAsnIleValLeuGluValLeuAlaArgAlaIleArgGlnGluLysGluIleLysGlyIleGlnIleGlyLysGluGluValLysLeuSerLeuPheAlaAspAspMetIleLeuTyrLeuGluAsnProLysAspSerAlaLysArgLeuLeuGluLeuIleAsnAspPheSerLysValSerGlyTyrLysIleAsnVal--GlnLysSerValAlaPheLeuTyrThrAsnAsnValGlnAla-----------------------------GluSerGlnIleLysAsnAlaIleProPheThrIleAlaThrLysLysIle--LysTyrLeuGlyIleHisLeu-ThrLysGluValLysAspLeuTyrLysGluAsnTyrLysThrLeuLeuLysGluIleIleAspAspThrAsnLysTrpLysAsnIleProCysSerTrpIleGlyArgIleAsnIle-ValLysMetAlaIleLeuProLys--AlaIleTyrArgPheAsnAlaIleProIleLysLeuProMetSerPhePheThrGluLeuGluLysThr-IleLeuLysPheIleTrpAsnGln-LysArgAlaGlnIleAlaLysAlaIleLeuSerLysLys
s chrUn_KI270748v1 17571 1017 + 93321 AAAGAAAACTACAAATCCTTATCCCTGATCAACACAGATGTAAAAATACTCAACAAAATTCTAGCAAACTGAAGCTAACAACACATCAAAAAGATAATTCATCATGATCAAGTGGGCTTTATTCCAGGGGTGCTTGAATGGTTCAAAATAGACAAATCAATAAACATGATTCACCACATAAATGGAACTGAGAACAAAAACCCTATGATCATCTCATTAGATGCAGAATaagcatttgataaaatccaacatctgtttatgataaaaaccctcaACAATATAGGTATAGATGGAGTATACCTCAAA---AAATGAGTCATCTATGACAAAGCCACAGCCAACATCATCCTGGATGGGCAAAAGTTAGAAGTGTTGCTTCTAGAAACTGGAAAAAAGCAAGGATGTTCACCTTCATCATTCCTATTCAATACAGTACTGGAAGTGCTAGCCAGAACTATCAGAAAGGAGAAAGAAATAAAAGGTATACAAATTAGAAAA---GAAGTCAAATGATCTCTGCTCACTGATGACATGACTGTAGGCCTAGAAAACCCTAAAGTCTTC---AGAAGACTCCTAGACTTGATACACGACTTCAGTAAAGTCTTGGGATAAACAAGC------CACAAAAATCAGTTGTATTTCTATACACCAAATACATTCAAGCTGTTTGAATGTTTGTTGAGATTAATTtgttgAGAACCAAATTAAGAACTCAACTGAATTTACAATAGCCATG---------AAAAATACCTAGGAATGCAT---AACTATATAAATGAAAGATCTCTACAAGGAGAACTACAAAATACTAATGAAAGAAATTATAGATGACATAAACAAATGGAAAAACATCCCATGCTCATGGATTAGAAAAATCAAT---AGCTAAAGTGACCATATCACCC---ATACAATCTATAGAGTTAATGCAATTCCCATCAAATTACCAACGTTATTTCTCACAaaattaaaaaaa---aaTCCTAAAGTTCACATGGAGCCAAAAAAAGATCCCTAATAGCCAAAGCACTTCTAAGCAAAAAa
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