File: AT77.mat

package info (click to toggle)
last-align 830-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 3,240 kB
  • ctags: 3,201
  • sloc: cpp: 40,808; python: 1,910; ansic: 1,188; makefile: 385; sh: 232
file content (9 lines) | stat: -rw-r--r-- 210 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
# This scoring scheme is for weakly-similar AT-rich DNA (~27%
# substitutions and ~77% A+T) (MC Frith, NAR 2011 39(4):e23).

#last -a15 -b2
   A  C  G  T
A  2 -3 -2 -3
C -3  5 -3 -2
G -2 -3  5 -3
T -3 -2 -3  2