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# This scoring scheme is for finding remote protein homologs (K Yamada
# & K Tomii, Bioinformatics 2014 30(3):317-25).
#last -a13 -b2
A R N D C Q E G H I L K M F P S T W Y V B J Z X *
A 3 -1 0 0 2 0 0 0 -1 -1 -1 -1 -1 -2 0 1 1 -4 -2 0 0 -1 0 -1 -6
R -1 6 0 -1 -3 2 -1 -2 1 -2 -3 3 -1 -3 -1 0 -1 -4 -2 -2 -1 -2 -1 -1 -6
N 0 0 5 3 -2 1 1 0 1 -4 -4 1 -2 -3 -1 1 0 -5 -1 -3 4 -4 1 -1 -6
D 0 -1 3 6 -4 1 3 -1 0 -5 -5 0 -3 -6 0 0 0 -5 -4 -3 5 -5 3 -1 -6
C 2 -3 -2 -4 12 -3 -3 -2 -1 0 -2 -3 0 -3 -3 1 0 -6 -1 2 -3 -1 -3 -1 -6
Q 0 2 1 1 -3 4 2 -2 1 -2 -2 2 0 -2 0 0 0 -5 -3 -2 1 -2 2 -1 -6
E 0 -1 1 3 -3 2 4 -1 0 -3 -3 1 -2 -4 0 0 0 -6 -2 -2 2 -3 4 -1 -6
G 0 -2 0 -1 -2 -2 -1 8 -2 -5 -5 -2 -4 -5 -2 0 -2 -5 -4 -4 -1 -5 -1 -1 -6
H -1 1 1 0 -1 1 0 -2 7 -2 -2 0 -2 0 -2 0 0 0 2 -2 0 -2 0 -1 -6
I -1 -2 -4 -5 0 -2 -3 -5 -2 5 3 -2 2 1 -4 -3 -1 -1 -1 3 -5 4 -3 -1 -6
L -1 -3 -4 -5 -2 -2 -3 -5 -2 3 5 -2 3 2 -3 -3 -2 0 0 2 -5 4 -3 -1 -6
K -1 3 1 0 -3 2 1 -2 0 -2 -2 4 -1 -4 0 0 0 -4 -2 -2 0 -2 1 -1 -6
M -1 -1 -2 -3 0 0 -2 -4 -2 2 3 -1 5 1 -3 -2 -1 -2 -1 1 -3 3 -2 -1 -6
F -2 -3 -3 -6 -3 -2 -4 -5 0 1 2 -4 1 7 -4 -3 -2 4 5 0 -5 2 -4 -1 -6
P 0 -1 -1 0 -3 0 0 -2 -2 -4 -3 0 -3 -4 8 0 0 -4 -5 -3 0 -3 0 -1 -6
S 1 0 1 0 1 0 0 0 0 -3 -3 0 -2 -3 0 3 2 -4 -2 -1 0 -3 0 -1 -6
T 1 -1 0 0 0 0 0 -2 0 -1 -2 0 -1 -2 0 2 4 -5 -2 0 0 -1 0 -1 -6
W -4 -4 -5 -5 -6 -5 -6 -5 0 -1 0 -4 -2 4 -4 -4 -5 15 5 -3 -5 0 -6 -1 -6
Y -2 -2 -1 -4 -1 -3 -2 -4 2 -1 0 -2 -1 5 -5 -2 -2 5 8 -1 -3 0 -2 -1 -6
V 0 -2 -3 -3 2 -2 -2 -4 -2 3 2 -2 1 0 -3 -1 0 -3 -1 4 -3 3 -2 -1 -6
B 0 -1 4 5 -3 1 2 -1 0 -5 -5 0 -3 -5 0 0 0 -5 -3 -3 5 -5 2 -1 -6
J -1 -2 -4 -5 -1 -2 -3 -5 -2 4 4 -2 3 2 -3 -3 -1 0 0 3 -5 4 -1 -1 -6
Z 0 -1 1 3 -3 2 4 -1 0 -3 -3 1 -2 -4 0 0 0 -6 -2 -2 2 -1 4 -1 -6
X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -6 -6
* -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 1
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