File: BISR.seed

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last-align 963-2
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# This seeding scheme is for aligning bisulfite-converted DNA
# *reverse* strands to a closely-related genome (MC Frith, R Mori, K
# Asai, NAR 2012 40:e100).

#lastdb -w2
#lastal -pBISR

1  AG C T
0  ACGT

1111110101100