File: MAM4.seed

package info (click to toggle)
last-align 963-2
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 3,380 kB
  • sloc: cpp: 41,136; python: 2,744; ansic: 1,240; makefile: 383; sh: 255
file content (12 lines) | stat: -rw-r--r-- 266 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
# This DNA seeding scheme is like MAM8, but a bit less sensitive, and
# uses about half as much memory.  [From Frith & NoƩ 2014 NAR 42:e59
# Table S11, row 12.]

1  A C G T
0  ACGT
T  AG CT

11100TT01T00T10TTTT
TTTT110TT0T001T0T1T1
11TT010T01TT0001T
11TT10T1T101TT