File: ublast.seed

package info (click to toggle)
last-align 963-2
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 3,380 kB
  • sloc: cpp: 41,136; python: 2,744; ansic: 1,240; makefile: 383; sh: 255
file content (12 lines) | stat: -rw-r--r-- 408 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
# This subset seed is the default for protein UBLAST v8
# (http://drive5.com/usearch/).  According to the UBLAST website, it
# is good for typical medium- to low-identity protein searches.

# (The final position of UBLAST's pattern is omitted here, because it
# is the same as the first position, and LAST cyclically repeats the
# pattern.)

1  ILMV FWY A C G H P KR ST DENQ
0  ILMVFWYACGHPKRSTDENQ

1011101