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### Copyright (C) 2001-2023 Deepayan Sarkar <Deepayan.Sarkar@R-project.org>
###
### This file is part of the lattice package for R.
### It is made available under the terms of the GNU General Public
### License, version 2, or at your option, any later version,
### incorporated herein by reference.
###
### This program is distributed in the hope that it will be
### useful, but WITHOUT ANY WARRANTY; without even the implied
### warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
### PURPOSE. See the GNU General Public License for more
### details.
###
### You should have received a copy of the GNU General Public
### License along with this program; if not, write to the Free
### Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
### MA 02110-1301, USA
level.colors <- function(x, at, col.regions, colors = TRUE, ...)
{
ind.col <- cut(x, at, include.lowest = TRUE, labels = FALSE)
if (!colors)
ind.col
else
{
if (missing(col.regions)) col.regions <- trellis.par.get("regions")$col
nregions <- length(at) - 1
if (is.function(col.regions)) col.regions <- col.regions(nregions)
ncolor <- length(col.regions)
col.regions <-
if (ncolor <= nregions)
rep(col.regions, length.out = nregions)
else
col.regions[round(seq(1, ncolor, length.out = nregions))]
col.regions[ind.col]
}
}
prepanel.default.levelplot <-
function(x, y, subscripts, ...)
{
pad <- lattice.getOption("axis.padding")$numeric
if (length(subscripts) > 0)
{
x <- x[subscripts]
y <- y[subscripts]
if (!is.factor(x)) ## (is.numeric(x))
{
ux <- sort(unique(x[is.finite(x)]))
if ((ulen <- length(ux)) < 2) xlim <- ux + c(-1, 1)
else
{
## need to be careful here for DateTime classes
diffs <- diff(as.numeric(ux))[c(1, ulen-1)]
xlim <- c(ux[1] - diffs[1] / 2,
ux[ulen] + diffs[2] / 2)
}
}
if (!is.factor(y)) ## (is.numeric(y))
{
uy <- sort(unique(y[is.finite(y)]))
if ((ulen <- length(uy)) < 2) ylim <- uy + c(-1, 1)
else
{
## need to be careful here for DateTime classes
diffs <- diff(as.numeric(uy))[c(1, ulen-1)]
ylim <- c(uy[1] - diffs[1] / 2,
uy[ulen] + diffs[2] / 2)
}
}
list(xlim =
if (!is.factor(x)) { ## (is.numeric(x))
extend.limits(xlim, prop = -pad/(1 + 2*pad))
} ## ^^ these get extended back later
else levels(x),
ylim = if (!is.factor(y)) { ## (is.numeric(y))
extend.limits(ylim, prop = -pad/(1 + 2*pad))
}
else levels(y),
dx = if (is.numeric(x)) length(ux) else 1,
dy = if (is.numeric(y)) length(uy) else 1)
}
else
prepanel.null()
}
panel.contourplot <- function(...) panel.levelplot(...)
## version using contourLines, and hopefully works for missing matrix
## entries as well
panel.levelplot <-
function(x, y, z,
subscripts,
at = pretty(z),
shrink,
labels = FALSE,
label.style = c("mixed", "flat", "align"),
contour = FALSE,
region = TRUE,
col = add.line$col,
lty = add.line$lty,
lwd = add.line$lwd,
border = "transparent",
border.lty = 1,
border.lwd = 0.1,
...,
region.type = c("grid", "contour"),
col.regions = regions$col,
alpha.regions = regions$alpha,
identifier = "levelplot")
{
if (length(subscripts) == 0) return()
regions <- trellis.par.get("regions")
region.type <- match.arg(region.type)
label.style <- match.arg(label.style)
x.is.factor <- is.factor(x)
y.is.factor <- is.factor(y)
x <- as.numeric(x)
y <- as.numeric(y)
z <- as.numeric(z)
## numcol <- length(at) - 1
## numcol.r <- length(col.regions)
## col.regions <-
## if (numcol.r <= numcol)
## rep(col.regions, length.out = numcol)
## else
## col.regions[round(seq(1, numcol.r, length.out = numcol))]
## zcol <- cut(z, at, include.lowest = TRUE, labels = FALSE)
zcol <-
if (region) level.colors(z, at, col.regions, colors = TRUE)
else "transparent"
x <- x[subscripts]
y <- y[subscripts]
minXwid <- if (length(unique(x)) > 1) min(diff(sort(unique(x)))) else 1
minYwid <- if (length(unique(y)) > 1) min(diff(sort(unique(y)))) else 1
fullZrange <- range(as.numeric(z), finite = TRUE) # for shrinking
z <- z[subscripts]
if (region) zcol <- zcol[subscripts]
if (hasGroupNumber())
group <- list(...)$group.number
else
group <- 0
## Do we need a zlim-like argument ?
shrinkx <- c(1, 1)
shrinky <- c(1, 1)
if (!missing(shrink)) {
if (is.numeric(shrink)) {
shrinkx <- rep(shrink, length.out = 2)
shrinky <- rep(shrink, length.out = 2)
}
else if (is.list(shrink)) {
shrinkx <- rep(shrink[[1]], length.out = 2)
shrinky <- rep(shrink[[1]], length.out = 2)
if ("x" %in% names(shrink)) shrinkx <- rep(shrink$x, length.out = 2)
if ("y" %in% names(shrink)) shrinky <- rep(shrink$y, length.out = 2)
}
else warning("Invalid 'shrink' parameter ignored")
}
scaleWidth <- function(z, min = .8, max = .8, zl = range(z, finite = TRUE)) {
if (diff(zl) == 0) rep(.5 * (min + max), length(z))
else min + (max - min) * (z - zl[1]) / diff(zl)
}
if (x.is.factor)
{
## unique values
ux <- sort(unique(x[!is.na(x)]))
## dimension of rectangles
lx <- rep(1, length(ux))
## centers of rectangles
cx <- ux
}
else
{
## sorted unique values of x
ux <- sort(unique(x[!is.na(x)]))
## actual box boundaries (x axis)
bx <-
if (length(ux) > 1)
c(3 * ux[1] - ux[2],
ux[-length(ux)] + ux[-1],
3 * ux[length(ux)] - ux[length(ux)-1]) / 2
else
ux + c(-.5, .5) * minXwid
## dimension of rectangles
lx <- diff(bx)
## centers of rectangles
cx <- (bx[-1] + bx[-length(bx)])/2
}
## same things for y
if (y.is.factor)
{
## unique values
uy <- sort(unique(y[!is.na(y)]))
## dimension of rectangles
ly <- rep(1, length(uy))
## centers of rectangles
cy <- uy
}
else
{
uy <- sort(unique(y[!is.na(y)]))
by <-
if (length(uy) > 1)
c(3 * uy[1] - uy[2],
uy[-length(uy)] + uy[-1],
3 * uy[length(uy)] - uy[length(uy)-1]) / 2
else
uy + c(-.5, .5) * minYwid
ly <- diff(by)
cy <- (by[-1] + by[-length(by)])/2
}
idx <- match(x, ux)
idy <- match(y, uy)
if (region)
{
if (region.type == "grid")
{
grid.rect(x = cx[idx],
y = cy[idy],
width = lx[idx] * scaleWidth(z, shrinkx[1], shrinkx[2], fullZrange),
height = ly[idy] * scaleWidth(z, shrinky[1], shrinky[2], fullZrange),
default.units = "native",
name = trellis.grobname(paste(identifier, "rect", sep="."),
type = "panel", group = group),
gp =
gpar(fill = zcol,
col = border,
lwd = border.lwd,
lty = border.lty,
alpha = alpha.regions))
}
else if (region.type == "contour")
{
numcol <- length(at) - 1
cols <- level.colors(x = seq_len(numcol) - 0.5,
at = seq_len(numcol + 1) - 1,
col.regions = col.regions,
colors = TRUE)
filledContour(x = cx,
y = cy,
z = matrix(z, length(cx)),
s = at,
cols = cols,
name = trellis.grobname(paste(identifier,
"polygon",
sep = "."),
type = "panel",
group = group),
border = border,
lwd = border.lwd,
lty = border.lty,
alpha = alpha.regions)
}
}
if (contour)
{
## calculate aspect ratio of panel to use in calculating label alignment
cpl <- current.panel.limits(unit="cm")
asp <- diff(cpl$ylim) / diff(cpl$xlim)
## Processing the labels argument
if (is.logical(labels) && !labels) labels <- NULL
else
{
if (is.characterOrExpression(labels)) labels <- list(labels = labels)
text <- trellis.par.get("add.text")
tmp <- list(col = text$col,
alpha = text$alpha,
cex = text$cex,
fontfamily = text$fontfamily,
fontface = text$fontface,
font = text$font)
labels <-
if (is.list(labels)) updateList(tmp, labels)
else tmp
if (!is.characterOrExpression(labels$labels)) # NULL/TRUE
labels$labels <- format(at, trim = TRUE)
}
add.line <- trellis.par.get("add.line")
## convert z into a matrix, with NA entries for those
## 'missing' from data frame. There's scope for ambiguity
## here, which can be avoided by the user.
m <- matrix(NA_real_, nrow = length(ux), ncol = length(uy))
m[(idy - 1) * length(ux) + idx ] <- z
clines <-
contourLines(x = ux, y = uy, z = m,
nlevels = length(at), ## necessary ?
levels = at)
ccount <- 0
for (val in clines) {
ccount <- ccount + 1
## each val looks like:
## $ :List of 3
## ..$ level: num 170
## ..$ x : num [1:21] 0.535 0.534 0.534 0.534 0.535 ...
## ..$ y : num [1:21] 0.398 0.400 0.417 0.433 0.434 ...
## we don't know how to leave gap in lines for labels.
llines(val, ## hopefully $levels won't matter
col = col, lty = lty, lwd = lwd,
identifier = paste(identifier, "line", ccount,
sep = "."))
## if too small, don't add label. How small is small ?
## Should depend on resolution. How ?
if (length(val$x) > 5)
{
if (!is.null(labels))
{
slopes <- diff(val$y) / diff(val$x)
## slopes[is.na(slopes)] <- 0
if (label.style == "flat")
{
## draw label at 'flattest' position along contour
textloc <- which.min(abs(slopes))
rotangle <- 0
}
else if (label.style == "align")
{
## draw label at 'deepest' position along
## contour, depth being min distance to either
## of the four edges, scaled appropriately
rx <- range(ux)
ry <- range(uy)
depth <- pmin(pmin(val$x - rx[1], rx[2] - val$x) / diff(rx),
pmin(val$y - ry[1], ry[2] - val$y) / diff(ry))
textloc <- min(which.max(depth), length(slopes))
# slopes has one less entry,
# and textloc indexes slopes
rotangle <- atan(asp * slopes[textloc] * diff(rx) / diff(ry)) * 180 / base::pi
}
else if (label.style == "mixed")
{
## mix both. align for contours whose flattest
## portion is too close to edge
rx <- range(ux)
ry <- range(uy)
depth <- pmin(pmin(val$x - rx[1], rx[2] - val$x) / diff(rx),
pmin(val$y - ry[1], ry[2] - val$y) / diff(ry))
textloc <- which.min(abs(slopes))
rotangle <- 0
if (depth[textloc] < .05 ) {
textloc <- min(which.max(depth), length(slopes))
rotangle <- atan(asp * slopes[textloc] * diff(rx) / diff(ry)) * 180 / base::pi
}
}
else stop("Invalid label.style")
i <- match(val$level, at)
ltext(labels$labels[i],
adj = c(.5, 0),
srt = rotangle,
col = labels$col,
alpha = labels$alpha,
cex = labels$cex,
font = labels$font,
fontfamily = labels$fontfamily,
fontface = labels$fontface,
x = .5 * (val$x[textloc]+val$x[textloc + 1]),
y = .5 * (val$y[textloc]+val$y[textloc + 1]),
identifier = paste(identifier, "label", ccount,
sep = "."))
}
}
}
}
}
contourplot <- function(x, data, ...) UseMethod("contourplot")
contourplot.table <-
function(x, data = NULL, aspect = "iso", ..., xlim, ylim)
{
ocall <- sys.call(); ocall[[1]] <- quote(contourplot)
## see comments in levelplot.table below
if (!missing(data)) warning("explicit 'data' specification ignored")
dn <- dimnames(x)
## if (!is.null(dn))
dimnames(x) <- lapply(dn, make.unique)
data <- as.data.frame.table(x)
nms <- names(data)
freq <- which(nms == "Freq")
nms <- nms[-freq]
form <- sprintf("Freq ~ %s + %s", nms[1], nms[2])
nms <- nms[-c(1, 2)]
len <- length(nms)
if (len > 0)
{
rest <- paste(nms, collapse = "+")
form <- paste(form, rest, sep = "|")
}
if (missing(xlim)) xlim <- dn[[1]]
if (missing(ylim)) ylim <- dn[[2]]
modifyList(contourplot(as.formula(form), data,
aspect = aspect, xlim = xlim, ylim = ylim, ...),
list(call = ocall))
}
contourplot.matrix <-
function(x, data = NULL, aspect = "iso",
..., xlim, ylim,
row.values = seq_len(nrow(x)),
column.values = seq_len(ncol(x)))
{
stopifnot(length(row.values) == nrow(x),
length(column.values) == ncol(x))
ocall <- sys.call(); ocall[[1]] <- quote(contourplot)
if (!missing(data)) warning("explicit 'data' specification ignored")
form <- z ~ row * column
data <- expand.grid(row = row.values, column = column.values)
data$z <- as.vector(as.numeric(x))
## if rownames/colnames are non-null, use them to label
if (missing(xlim))
xlim <-
if (!is.null(rownames(x))) rownames(x)
else range(row.values, finite = TRUE) + c(-0.5, 0.5)
if (missing(ylim))
ylim <-
if (!is.null(colnames(x))) colnames(x)
else range(column.values, finite = TRUE) + c(-0.5, 0.5)
modifyList(contourplot(form, data, aspect = aspect, xlim = xlim, ylim = ylim, ...),
list(call = ocall))
}
### FIXME: This would have been cleaner, except that as.table() forces
### row and column names, whereas we would prefer numeric axes if no
### names are present. The same point could be made for arrays
### (although what should happen to conditioning variables is less
### clear in that case), but we will ignore that issue for now.
## contourplot.matrix <- function(x, data = NULL, xlab, ylab, ...)
## {
## if (!missing(data)) warning("explicit 'data' specification ignored")
## dns <- names(dimnames(x))
## if (missing(xlab))
## xlab <- if (is.null(dns)) "row" else dns[1]
## if (missing(ylab))
## ylab <- if (is.null(dns)) "column" else dns[2]
## contourplot(as.table(x), xlab = xlab, ylab = ylab, ...)
## }
contourplot.array <- function(x, data = NULL, ...)
{
ocall <- sys.call(); ocall[[1]] <- quote(contourplot)
if (!missing(data)) warning("explicit 'data' specification ignored")
modifyList(contourplot(as.table(x), ...), list(call = ocall))
}
contourplot.formula <-
function(x,
data = NULL,
panel = lattice.getOption("panel.contourplot"),
default.prepanel = lattice.getOption("prepanel.default.contourplot"),
cuts = 7,
labels = TRUE,
contour = TRUE,
pretty = TRUE,
region = FALSE,
...)
{
ocall <- sys.call(); ocall[[1]] <- quote(contourplot)
ccall <- match.call()
ccall$data <- data
ccall$panel <- panel
ccall$cuts <- cuts
ccall$labels <- labels
ccall$contour <- contour
ccall$pretty <- pretty
ccall$region <- region
ccall[[1]] <- quote(lattice::levelplot)
ans <- eval.parent(ccall)
ans$call <- ocall
ans
}
levelplot <- function(x, data, ...) UseMethod("levelplot")
levelplot.array <- function(x, data = NULL, ...)
{
if (!missing(data)) warning("explicit 'data' specification ignored")
levelplot(as.table(x), ...)
}
levelplot.table <-
function(x, data = NULL, aspect = "iso", ..., xlim, ylim)
{
ocall <- sys.call(); ocall[[1]] <- quote(levelplot)
if (!missing(data)) warning("explicit 'data' specification ignored")
dn <- dimnames(x) ## cannot be NULL for tables
## We don't want to collapse duplicate names. We do prefer to use
## original names for labeling, and we do so for xlim and ylim
## below, but not for conditioning variables (too much work, plus
## may not even be possible)
## if (!is.null(dn))
dimnames(x) <- lapply(dn, make.unique)
data <- as.data.frame.table(x)
nms <- names(data)
freq <- which(nms == "Freq")
nms <- nms[-freq]
form <- sprintf("Freq ~ %s + %s", nms[1], nms[2])
nms <- nms[-c(1, 2)]
len <- length(nms)
if (len > 0)
{
rest <- paste(nms, collapse = "+")
form <- paste(form, rest, sep = "|")
}
## if rownames/colnames are non-null, use them to label (not the unique versions)
if (missing(xlim)) xlim <- dn[[1]]
if (missing(ylim)) ylim <- dn[[2]]
modifyList(levelplot(as.formula(form), data,
aspect = aspect, xlim = xlim, ylim = ylim, ...),
list(call = ocall))
}
levelplot.matrix <-
function(x, data = NULL, aspect = "iso",
..., xlim, ylim,
row.values = seq_len(nrow(x)),
column.values = seq_len(ncol(x)))
{
stopifnot(length(row.values) == nrow(x),
length(column.values) == ncol(x))
ocall <- sys.call(); ocall[[1]] <- quote(levelplot)
if (!missing(data)) warning("explicit 'data' specification ignored")
form <- z ~ row * column
data <- expand.grid(row = row.values, column = column.values)
data$z <- as.vector(as.numeric(x))
## if rownames/colnames are non-null, use them to label
if (missing(xlim))
xlim <-
if (!is.null(rownames(x))) rownames(x)
else range(row.values, finite = TRUE) + c(-0.5, 0.5)
if (missing(ylim))
ylim <-
if (!is.null(colnames(x))) colnames(x)
else range(column.values, finite = TRUE) + c(-0.5, 0.5)
modifyList(levelplot(form, data, aspect = aspect, xlim = xlim, ylim = ylim, ...),
list(call = ocall))
}
### See FIXME for contourplot.matrix above
## levelplot.matrix <- function(x, data = NULL, xlab, ylab, ...)
## {
## if (!missing(data)) warning("explicit 'data' specification ignored")
## dns <- names(dimnames(x))
## if (missing(xlab))
## xlab <- if (is.null(dns)) "row" else dns[1]
## if (missing(ylab))
## ylab <- if (is.null(dns)) "column" else dns[2]
## levelplot(as.table(x), xlab = xlab, ylab = ylab, ...)
## }
levelplot.formula <-
function(x,
data = NULL,
allow.multiple = is.null(groups) || outer,
outer = TRUE,
aspect = "fill",
panel = if (useRaster) lattice.getOption("panel.levelplot.raster")
else lattice.getOption("panel.levelplot"),
prepanel = NULL,
scales = list(),
strip = TRUE,
groups = NULL,
xlab,
xlim,
ylab,
ylim,
## at, region etc should be ideally in panel.levelplot only, but is needed for colorkey
at,
cuts = 15,
pretty = FALSE,
region = TRUE,
drop.unused.levels = lattice.getOption("drop.unused.levels"),
...,
useRaster = FALSE,
lattice.options = NULL,
default.scales = list(),
default.prepanel = lattice.getOption("prepanel.default.levelplot"),
colorkey = region,
col.regions,
alpha.regions,
subset = TRUE)
{
formula <- x
dots <- list(...)
groups <- eval(substitute(groups), data, environment(formula))
subset <- eval(substitute(subset), data, environment(formula))
if (!is.null(lattice.options))
{
oopt <- lattice.options(lattice.options)
on.exit(lattice.options(oopt), add = TRUE)
}
## Step 1: Evaluate x, y, z etc. and do some preprocessing
form <-
latticeParseFormula(formula, data, dimension = 3,
subset = subset, groups = groups,
multiple = allow.multiple,
outer = outer, subscripts = TRUE,
drop = drop.unused.levels)
## We need to be careful with 'subscripts' here. It HAS to be
## there, and it's to be used to index x, y, z (and not only
## groups, unlike in xyplot etc). This means we have to subset
## groups as well, which is about the only use for the subscripts
## calculated in latticeParseFormula, after which subscripts is
## regenerated as a straight sequence indexing the variables
if (!is.null(form$groups))
groups <-
if (is.matrix(form$groups)) as.vector(form$groups)[form$subscr]
else if (is.data.frame(form$groups)) as.vector(as.matrix(form$groups))[form$subscr]
else form$groups[form$subscr]
subscr <- seq_len(length(form$left))
cond <- form$condition
z <- form$left
x <- form$right.x
y <- form$right.y
if (useRaster)
{
## Does device support raster images?
devRaster <- dev.capabilities("rasterImage")$rasterImage
if (is.na(devRaster))
{
warning("device support for raster images unknown, ignoring 'raster=TRUE'")
useRaster <- FALSE
}
else if (devRaster == "no")
{
warning("device has no raster support, ignoring 'raster=TRUE'")
useRaster <- FALSE
}
else if (devRaster == "non-missing" && any(is.na(z)))
{
warning("device does not support raster images with NA, ignoring 'raster=TRUE'")
useRaster <- FALSE
}
}
if (!is.function(panel)) panel <- eval(panel)
if (!is.function(strip)) strip <- eval(strip)
if (length(cond) == 0)
{
strip <- FALSE
cond <- list(gl(1, length(x)))
}
if (missing(xlab)) xlab <- form$right.x.name
if (missing(ylab)) ylab <- form$right.y.name
zrng <- extend.limits(range(as.numeric(z), finite = TRUE))
if (missing(at))
at <-
if (pretty) pretty(zrng, cuts)
else seq(zrng[1], zrng[2], length.out = cuts + 2)
## create a skeleton trellis object with the
## less complicated components:
foo <-
do.call("trellis.skeleton",
c(list(formula = formula,
cond = cond,
aspect = aspect,
strip = strip,
panel = panel,
xlab = xlab,
ylab = ylab,
xlab.default = form$right.x.name,
ylab.default = form$right.y.name,
lattice.options = lattice.options), dots),
quote = TRUE)
dots <- foo$dots # arguments not processed by trellis.skeleton
foo <- foo$foo
foo$call <- sys.call(); foo$call[[1]] <- quote(levelplot)
## Step 2: Compute scales.common (excluding limits)
if (is.character (scales)) scales <- list(relation = scales)
scales <- updateList(default.scales, scales)
foo <- c(foo,
do.call("construct.scales", scales))
## Step 3: Decide if limits were specified in call:
have.xlim <- !missing(xlim)
if (!is.null(foo$x.scales$limits))
{
have.xlim <- TRUE
xlim <- foo$x.scales$limits
}
have.ylim <- !missing(ylim)
if (!is.null(foo$y.scales$limits))
{
have.ylim <- TRUE
ylim <- foo$y.scales$limits
}
## Step 4: Decide if log scales are being used:
have.xlog <- !is.logical(foo$x.scales$log) || foo$x.scales$log
have.ylog <- !is.logical(foo$y.scales$log) || foo$y.scales$log
if (have.xlog)
{
xlog <- foo$x.scales$log
xbase <-
if (is.logical(xlog)) 10
else if (is.numeric(xlog)) xlog
else if (xlog == "e") exp(1)
x <- log(x, xbase)
if (have.xlim) xlim <- logLimits(xlim, xbase)
}
if (have.ylog)
{
ylog <- foo$y.scales$log
ybase <-
if (is.logical(ylog)) 10
else if (is.numeric(ylog)) ylog
else if (ylog == "e") exp(1)
y <- log(y, ybase)
if (have.ylim) ylim <- logLimits(ylim, ybase)
}
## Step 5: Process cond
cond.max.level <- unlist(lapply(cond, nlevels))
## Most levelplot/contourplot specific code here
if (is.logical(colorkey))
{
if (colorkey)
{
colorkey <- list(at = at, space = "right")
if (useRaster) colorkey$raster <- TRUE
if (!missing(col.regions)) colorkey$col <- col.regions
if (!missing(alpha.regions)) colorkey$alpha <- alpha.regions
}
else colorkey <- NULL
}
else if (is.list(colorkey))
{
tmp <- ## FIXME: does the inside thing work? probably not
list(space = if (any(c("x", "y", "corner") %in% names(colorkey))) "inside" else "right",
at = at)
if (!missing(col.regions)) tmp$col <- col.regions
if (!missing(alpha.regions)) tmp$alpha <- alpha.regions
if (useRaster) tmp$raster <- TRUE
colorkey <- updateList(tmp, colorkey)
}
foo$legend <-
construct.legend(foo$legend,
colorkey,
fun = "draw.colorkey")
## Step 6: Determine packets
foo$panel.args.common <-
c(list(x = x, y = y, z = z, at = at,
region = region), dots)
if (!missing(col.regions)) foo$panel.args.common$col.regions <- col.regions
if (!missing(alpha.regions)) foo$panel.args.common$alpha.regions <- alpha.regions
# ############### premature calculation of col.regions
# ## region
# numcol <- length(at)-1
# numcol.r <- length(col.regions)
# col.regions <-
# if (numcol.r <= numcol)
# rep(col.regions, length.out = numcol)
# else col.regions[floor(1+(1:numcol-1)*(numcol.r-1)/(numcol-1))]
# if (is.logical(colorkey))
# {
# if (colorkey) colorkey <-
# list(space = "right", col = col.regions,
# at = at, tick.number = 7)
# else colorkey <- NULL
# }
# else if (is.list(colorkey))
# {
# #foo$colorkey <- colorkey
# if (is.null(colorkey$col)) colorkey$col <- col.regions
# if (is.null(colorkey$at)) colorkey$at <- at
# if (is.null(colorkey$space)) colorkey$space <-
# if (any(c("x", "y", "corner") %in% names(colorkey))) "inside" else "right"
# }
# foo$legend <-
# construct.legend(foo$legend,
# colorkey,
# fun = "draw.colorkey")
# zcol <- rep(NA, length(z)) #numeric(length(z))
# for (i in seq_along(col.regions))
# zcol[!id.na & !is.na(z) & z>=at[i] & z<at[i+1]] <- i
# foo$panel.args.common <-
# c(list(x=x, y=y, z=z, at=at,
# labels=labels,
# region = region, contour = contour,
# zcol=zcol,
# col.regions=col.regions),
# dots)
# ##############################
if (!is.null(groups)) foo$panel.args.common$groups <- groups
npackets <- prod(cond.max.level)
if (npackets != prod(sapply(foo$condlevels, length)))
stop("mismatch in number of packets")
foo$panel.args <- vector(mode = "list", length = npackets)
foo$packet.sizes <- numeric(npackets)
if (npackets > 1)
{
dim(foo$packet.sizes) <- sapply(foo$condlevels, length)
dimnames(foo$packet.sizes) <- lapply(foo$condlevels, as.character)
}
cond.current.level <- rep(1, length(cond))
for (packet.number in seq_len(npackets))
{
id <- compute.packet(cond, cond.current.level)
foo$packet.sizes[packet.number] <- sum(id)
foo$panel.args[[packet.number]] <-
list(subscripts = subscr[id])
cond.current.level <-
cupdate(cond.current.level,
cond.max.level)
}
more.comp <-
c(limits.and.aspect(default.prepanel,
prepanel = prepanel,
have.xlim = have.xlim, xlim = xlim,
have.ylim = have.ylim, ylim = ylim,
x.relation = foo$x.scales$relation,
y.relation = foo$y.scales$relation,
panel.args.common = foo$panel.args.common,
panel.args = foo$panel.args,
aspect = aspect,
npackets = npackets,
x.axs = foo$x.scales$axs,
y.axs = foo$y.scales$axs),
cond.orders(foo))
foo[names(more.comp)] <- more.comp
class(foo) <- "trellis"
foo
}
## experimental version using grid.raster (R >= 2.11.0)
panel.levelplot.raster <-
function(x, y, z,
subscripts,
at = pretty(z),
...,
col.regions = regions$col,
alpha.regions = regions$alpha,
interpolate = FALSE,
identifier = "levelplot")
{
if (length(subscripts) == 0) return()
regions <- trellis.par.get("regions")
x.is.factor <- is.factor(x)
y.is.factor <- is.factor(y)
x <- as.numeric(x)
y <- as.numeric(y)
z <- as.numeric(z)
zcol <- level.colors(z, at, col.regions, colors = TRUE)
x <- x[subscripts]
y <- y[subscripts]
z <- z[subscripts]
zcol <- zcol[subscripts]
if (hasGroupNumber())
group <- list(...)$group.number
else
group <- 0
if (x.is.factor)
{
## unique values (we want to keep missing levels in between)
ux <- seq(from = min(x, na.rm = TRUE), to = max(x, na.rm = TRUE))
xwid <- 1L
}
else
{
## sorted unique values of x
ux <- sort(unique(x[!is.na(x)]))
## complain if all ux are not equidistant
## if (length(unique(diff(ux))) != 1) -- too strict
if (!isTRUE(all.equal(diff(range(diff(ux))), 0)))
warning("'x' values are not equispaced; output may be wrong")
xwid <- mean(diff(ux))
}
## same things for y
if (y.is.factor)
{
ux <- seq(from = min(y, na.rm = TRUE), to = max(y, na.rm = TRUE))
ywid <- 1L
}
else
{
uy <- sort(unique(y[!is.na(y)]))
if (!isTRUE(all.equal(diff(range(diff(uy))), 0)))
warning("'y' values are not equispaced; output may be wrong")
ywid <- mean(diff(uy))
}
ncolumns <- length(ux)
nrows <- length(uy)
xlow <- ux[1] - 0.5 * xwid
xhigh <- ux[ncolumns] + 0.5 * xwid
ylow <- uy[1] - 0.5 * ywid
yhigh <- uy[nrows] + 0.5 * ywid
## create a suitable matrix of colors
zmat <- rep("transparent", ncolumns * nrows)
idx <- match(x, ux)
idy <- match(y, rev(uy)) # image goes top to bottom
id <- idy + nrows * (idx-1L)
zmat[id] <- zcol
dim(zmat) <- c(nrows, ncolumns)
grid.raster(as.raster(zmat), interpolate = interpolate,
x = xlow, y = ylow,
width = xhigh - xlow, height = yhigh - ylow,
just = c("left", "bottom"),
default.units = "native",
name = trellis.grobname(paste(identifier, "raster", sep="."),
type = "panel", group = group))
}
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