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#!/bin/bash
set -e
# Run comparative tests to see if we get an expected default output. Test installed files so no need to move them.
# lefse_run.py
if [[ $(lefse_run.py -h 2>&1) = "usage: lefse_run.py [-h]"* ]]; then
echo "lefse_run.py comparative pass"
else
echo "lefse_run.py comparative fail. Instead, I get:"
lefse_run.py -h
exit 1
fi
# lefse2circlader.py
if [[ $(lefse2circlader.py -h 2>&1) = "usage: lefse2circlader.py [-h]"* ]]; then
echo "lefse2circlader.py comparative pass"
else
echo "lefse2circlader.py comparative fail. Instead, I get:"
lefse2circlader.py -h
exit 1
fi
# lefse_plot_cladogram.py
if [[ $(lefse_plot_cladogram.py -h 2>&1) = "usage: lefse_plot_cladogram.py [-h]"* ]]; then
echo "lefse_plot_cladogram.py comparative pass"
else
echo "lefse_plot_cladogram.py comparative fail. Instead, I get:"
lefse_plot_cladogram.py -h
exit 1
fi
# lefse_plot_features.py
if [[ $(lefse_plot_features.py -h 2>&1) = "usage: lefse_plot_features.py [-h]"* ]]; then
echo "lefse_plot_features.py comparative pass"
else
echo "lefse_plot_features.py comparative fail. Instead, I get:"
lefse_plot_features.py -h
exit 1
fi
# plo_res
if [[ $(lefse_plot_res.py -h 2>&1) = "usage: lefse_plot_res.py [-h]"* ]]; then
echo "lefse_plot_res.py comparative pass"
else
echo "lefse_plot_res.py comparative fail. Instead, I get:"
lefse_plot_res.py -h
exit 1
fi
# qiime2lefse.py
if [[ $(qiime2lefse.py -h 2>&1) = "usage: qiime2lefse.py [-h]"* ]]; then
echo "qiime2lefse.py comparative pass"
else
echo "qiime2lefse.py comparative fail. Instead, I get:"
qiime2lefse.py -h
exit 1
fi
# lefse_format_input.py
if [[ $(lefse_format_input.py -h 2>&1) = "usage: lefse_format_input.py [-h]"* ]]; then
echo "lefse_format_input.py comparative pass"
else
echo "lefse_format_input.py comparative fail. Instead, I get:"
lefse_format_input.py -h
exit 1
fi
|
