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"""
Author: Timothy Tickle
Description: Validate Data containing methods for testing variables.
"""
#####################################################################################
# Copyright (C) <2012>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of
# this software and associated documentation files (the "Software"), to deal in the
# Software without restriction, including without limitation the rights to use, copy,
# modify, merge, publish, distribute, sublicense, and/or sell copies of the Software,
# and to permit persons to whom the Software is furnished to do so, subject to
# the following conditions:
#
# The above copyright notice and this permission notice shall be included in all copies
# or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED,
# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
# OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
# SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
#####################################################################################
__author__ = "Timothy Tickle"
__copyright__ = "Copyright 2012"
__credits__ = ["Timothy Tickle"]
__license__ = "MIT"
__maintainer__ = "Timothy Tickle"
__email__ = "ttickle@sph.harvard.edu"
__status__ = "Development"
# Import local code
from types import *
import decimal
import os
import re
import string
class ValidateData:
# Tested 5
@staticmethod
def funcIsValidBoolean(parameterValue):
"""
Validates a parameter as a valid boolean.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid boolean.
:type Boolean
"""
# Check to make sure it is not null
if parameterValue == None:
return False
# Check to make sure it is a string
if not type(parameterValue) is BooleanType:
return False
return True
# Tested 6
@staticmethod
def funcIsTrue(parameterValue):
"""
Validates a parameter as true.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is True.
:type Boolean
"""
if(ValidateData.funcIsValidBoolean(parameterValue)):
if(parameterValue == True):
return True
return False
# Tested 6
@staticmethod
def funcIsFalse(parameterValue):
"""
Validates a parameter as false.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is False.
:type Boolean
"""
if(ValidateData.funcIsValidBoolean(parameterValue)):
if(parameterValue == False):
return True
return False
# Tested 5
@staticmethod
def funcIsValidInteger(parameterValue):
"""
Validates a parameter as an integer.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is an integer.
:type Boolean
"""
# Check to make sure it is not null
if (parameterValue == None):
return False
# Check to make sure it is an integer
if not type(parameterValue) is IntType:
return False
return True
# Tested 5
@staticmethod
def funcIsValidPositiveInteger(parameterValue, tempZero=False):
"""
Validates a parameter as false.
:param parameterValue: Value to be evaluated.
:type Unknown
:param tempZero: Allows one to set what the value for zero should return.
:type Boolean The return value for zero.
:return Boolean: True indicates the parameter is a positive integer.
:type Boolean
"""
# Check to make sure it is not null
if not ValidateData.funcIsValidInteger(parameterValue):
return False
# Check to see it is positive
if (parameterValue < 0):
return False
# Check for zero value
if(parameterValue == 0):
return tempZero
return True
# Tested 14
@staticmethod
def funcIsValidNumeric(parameterValue):
"""
Validates a parameter as an integer.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a numeric.
:type Boolean
"""
# Check to make sure it is not null
if (parameterValue == None):
return False
# Check to make sure it is an integer
if((type(parameterValue) == IntType)or(type(parameterValue) == LongType)or(type(parameterValue) == FloatType)or(type(parameterValue) == ComplexType)or(str(type(parameterValue)) == "<type 'numpy.float64'>")):
if(not type(parameterValue) == BooleanType):
return True
return False
# Tested 5
@staticmethod
def funcIsValidStringType(parameterValue):
"""
Validates a parameter as a string. This allows the string to be blank or empty.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a string type.
:type Boolean
"""
# Check to make sure it is not null
if parameterValue == None:
return False
# Check to make sure it is a string
if not type(parameterValue) is StringType:
return False
return True
# Tested 5
@staticmethod
def funcIsValidString(parameterValue):
"""
Validates a parameter as a string. Does NOT allow string to be blank or empty.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a string.
:type Boolean
"""
# Type check
if not ValidateData.funcIsValidStringType(parameterValue):
return False
# Check to see it is not blank
if parameterValue.strip() == "":
return False
return True
@staticmethod
def funcIsValidStringInt(parameterValue):
"""
Validates a parameter that is a string as a format which is an integer.
:param parameterValue: Value to be evaluated.
:type Unknown
"""
# Type string check
if not ValidateData.funcIsValidStringType(parameterValue):
return False
# Check to see if the string can be converted to an integer
try:
int(parameterValue)
except:
return False
return True
@staticmethod
def funcIsValidStringFloat(parameterValue):
"""
Validates a parameter that is a string as a format which is a numeric.
:param parameterValue: Value to be evaluated.
:type Unknown
"""
# Type string check
if not ValidateData.funcIsValidStringType(parameterValue):
return False
# Check to see if the string can be converted to a double
try:
float(parameterValue)
except:
return False
return True
# Tested 6
@staticmethod
def funcIsValidFormatString(parameterValue):
"""
Validates a parameter as a valid format string.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
lettersValid = False
if ValidateData.funcIsValidString(parameterValue):
validChars = "BbcdfHhIiLlPpsx0123456789"
for letter in parameterValue:
lettersValid = letter in validChars
if(not lettersValid):
break
return lettersValid
# Tested 5
@staticmethod
def funcIsValidChar(parameterValue):
"""
Validates a parameter as a valid character.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
return ValidateData.funcIsValidString(parameterValue)
# Tested 13
@staticmethod
def funcIsValidPositiveNumberChar(parameterValue):
"""
Validates a parameter as a valid character representing a number.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
# Check to make sure is a valid string
if not ValidateData.funcIsValidString(parameterValue):
return False
# Try to convert to decimal
try:
decimalConversion = decimal.Decimal(parameterValue)
if decimalConversion < 0:
return False
except:
return False
return True
# Tested 9
@staticmethod
def funcIsValidFlagChar(parameterValue):
"""
Validates a parameter as a valid character representing a boolean.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
if parameterValue == '0' or parameterValue == "0" or parameterValue == '1' or parameterValue == "1":
return True
return False
# Tested 15
@staticmethod
def funcIsValidBoundedIntegerChar(parameterValue, iValueOne, iValueTwo):
"""
Validates a parameter as a valid characater that represents an integer inclusively bounded by two given values.
:param parameterValue: Value to be evaluated.
:type Unknown
:param iValueOne: One bound for the value.
:type Integer
:param iValueTwo: The other bound for the data.
:type Integer
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
# Check to make sure is a valid string
if not ValidateData.funcIsValidString(parameterValue):
return False
# Check to make sure is a valid integer
if not ValidateData.funcIsValidInteger(iValueOne):
return False
# Check to make sure is a valid integer
if not ValidateData.funcIsValidInteger(iValueTwo):
return False
# Try to convert to decimal
try:
intConversion = int(parameterValue)
if(iValueOne < iValueTwo):
if ((intConversion >= iValueOne) and (intConversion <= iValueTwo)):
return True
return False
if(iValueTwo < iValueOne):
if ((intConversion >= iValueTwo) and (intConversion <= iValueOne)):
return True
return False
if(iValueOne == iValueTwo):
if (intConversion == iValueOne):
return True
return False
except:
return False
# Tested 9
@staticmethod
def funcIsValidList(parameterValue):
"""
Validates a parameter as a list.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a list
:type Boolean
"""
# Check to make sure it is not null
if parameterValue == None:
return False
# Check to make sure it is a list
if not type(parameterValue) is ListType:
return False
# Check elements
listSize = len(parameterValue)
for i in range(0, listSize):
if parameterValue[i] == None:
return False
if type(parameterValue[i]) is ListType:
if ValidateData.funcIsValidList(parameterValue[i]) == False:
return False
return True
# Tested 9
@staticmethod
def funcIsValidTuple(parameterValue):
"""
Validates a parameter as a tuple.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a tuple
:type Boolean
"""
# Check to make sure it is not null
if parameterValue == None:
return False
# Check to make sure it is a string
if not type(parameterValue) is TupleType:
return False
# Check elements
tupleSize = len(parameterValue)
for i in range(0, tupleSize):
if parameterValue[i] == None:
return False
if type(parameterValue[i]) is TupleType:
if ValidateData.funcIsValidTuple(parameterValue[i]) == False:
return False
return True
# Tested 7
@staticmethod
def funcIsValidNumericList(parameterValue):
"""
Validates a parameter as a list of numeric values.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a list of numeric values.
:type Boolean
"""
#Check is valid list
if(not ValidateData.funcIsValidList(parameterValue)):
return False
#Check elements
listSize = len(parameterValue)
for i in range(0,listSize):
if(not ValidateData.funcIsValidNumeric(parameterValue[i])):
return False
return True
#Tested 7
@staticmethod
def funcIsValidStringList(parameterValue):
"""
Validates a parameter as a list of string values.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a list of string values.
:type Boolean
"""
#Check is valid list
if(not ValidateData.funcIsValidList(parameterValue)):
return False
#Check elements
listSize = len(parameterValue)
for i in range(0,listSize):
if(not ValidateData.funcIsValidString(parameterValue[i])):
return False
return True
#Tested 4
@staticmethod
def funcIsValidNPArray(parameterValue):
"""
Validates a parameter as a numpy array.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a numpy array.
:type Boolean
"""
# Check to make sure it is not null
if parameterValue == None:
return False
# Check to make sure it is a structure array
if not str(type(parameterValue)) == "<type 'numpy.ndarray'>":
return False
return True
# Tested 9
@staticmethod
def funcIsValidDictionary(parameterValue):
"""
Validates a parameter as a dictionary.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a dictionary.
:type Boolean
"""
#Check to make sure it is not null
if parameterValue == None:
return False
#Check to make sure it is a string
if not type(parameterValue) is DictType:
return False
#Check key elements
keyList = list(parameterValue.keys())
keyListSize = len(keyList)
for i in range(0,keyListSize):
if keyList[i] == None:
return False
if type(keyList[i]) is ListType:
if validateData.funcIsValidList(keyList[i]) == False:
return False
#Check key elements
itemList = list(parameterValue.values())
itemListSize = len(itemList)
for i in range(0,itemListSize):
if itemList[i] == None:
return False
if type(itemList[i]) is ListType:
if ValidateData.funcIsValidList(itemList[i]) == False:
return False
return True
# Tested 18
@staticmethod
def funcIsValidDNASequence(parameterValue):
"""
Validates a parameter as a valid DNA sequence.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
if ValidateData.funcIsValidString(parameterValue):
expression = re.compile(r'[^atcgATCG]')
if not None == expression.search(parameterValue):
return False
return True
return False
# Tested 15
@staticmethod
def funcIsValidNucleotideBase(parameterValue):
"""
Validates a parameter as a character which is a valid nucleotide representation.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
if (ValidateData.funcIsValidDNASequence(parameterValue) or (parameterValue == 'u') or (parameterValue == "U")):
if (len(parameterValue) == 1):
return True
return False
# Testing 4
@staticmethod
def funcIsValidFileName(parameterValue):
"""
Validates a parameter as a valid file name.
:param parameterValue: Value to be evaluated.
:type Unknown
:return Boolean: True indicates the parameter is a valid file path.
:type Boolean
"""
if parameterValue is None:
return False
elif(ValidateData.funcIsValidString(parameterValue)):
return os.path.exists(parameterValue)
return False
# Tested 5
@staticmethod
def funcIsValidClass(parameterValue, strCorrectName):
"""
Validates a parameter as a valid class (of a specifc type given by name).
:param parameterValue: Value to be evaluated.
:type Unknown
:param strCorrectName: Name of te class the parameter should be.
:type Unknown
:return Boolean: True indicates the parameter is a valid value.
:type Boolean
"""
if(parameterValue == None):
return False
if not ValidateData.funcIsValidString(strCorrectName):
return False
classType = type(parameterValue).__name__
if(classType == strCorrectName):
return True
if(classType == 'instance'):
if(parameterValue.__class__.__name__ == strCorrectName):
return True
else:
return False
return False
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