1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
|
Changes
LICENSE
MANIFEST
META.json
META.yml
Makefile.PL
README
README.md
dist.ini
doc/slides/dbic_intro/Spork.slides
doc/slides/dbic_intro/config.yaml
doc/slides/dbic_intro/config/config.yaml
doc/slides/dbic_intro/plugin/template/ttc/slides/template/s5/s5.html.ttc
doc/slides/dbic_intro/plugin/template/ttc/slides/template/s5/slide.html.ttc
doc/slides/dbic_intro/slides/css/perl_tidy_blocks.css
doc/slides/dbic_intro/slides/images/cpan.jpg
doc/slides/dbic_intro/slides/images/cpan_banner.png
doc/slides/dbic_intro/slides/start.html
doc/slides/dbic_intro/slides/template/s5/s5.html
doc/slides/dbic_intro/slides/template/s5/slide.html
doc/slides/dbic_intro/slides/ui/bodybg.gif
doc/slides/dbic_intro/slides/ui/button.gif
doc/slides/dbic_intro/slides/ui/framing.css
doc/slides/dbic_intro/slides/ui/opera.css
doc/slides/dbic_intro/slides/ui/pretty.css
doc/slides/dbic_intro/slides/ui/print.css
doc/slides/dbic_intro/slides/ui/s5-core.css
doc/slides/dbic_intro/slides/ui/slide0h1.gif
doc/slides/dbic_intro/slides/ui/slides.css
doc/slides/dbic_intro/slides/ui/slides.js
doc/slides/dbic_intro/slides/ui/toggle.gif
doc/slides/dbic_intro/template/tt2/bottom.html
doc/slides/dbic_intro/template/tt2/controls.js
doc/slides/dbic_intro/template/tt2/index.html
doc/slides/dbic_intro/template/tt2/slide.css
doc/slides/dbic_intro/template/tt2/slide.html
doc/slides/dbic_intro/template/tt2/start.html
doc/slides/dbic_intro/template/tt2/top.html
doc/slides/intro/Spork.slides
doc/slides/intro/config.yaml
doc/slides/intro/config/config.yaml
doc/slides/intro/plugin/template/ttc/slides/template/s5/s5.html.ttc
doc/slides/intro/plugin/template/ttc/slides/template/s5/slide.html.ttc
doc/slides/intro/slides/css/perl_tidy_blocks.css
doc/slides/intro/slides/images/cpan.jpg
doc/slides/intro/slides/images/cpan_banner.png
doc/slides/intro/slides/start.html
doc/slides/intro/slides/template/s5/s5.html
doc/slides/intro/slides/template/s5/slide.html
doc/slides/intro/slides/ui/bodybg.gif
doc/slides/intro/slides/ui/button.gif
doc/slides/intro/slides/ui/framing.css
doc/slides/intro/slides/ui/opera.css
doc/slides/intro/slides/ui/pretty.css
doc/slides/intro/slides/ui/print.css
doc/slides/intro/slides/ui/s5-core.css
doc/slides/intro/slides/ui/slide0h1.gif
doc/slides/intro/slides/ui/slides.css
doc/slides/intro/slides/ui/slides.js
doc/slides/intro/slides/ui/toggle.gif
doc/slides/intro/template/tt2/bottom.html
doc/slides/intro/template/tt2/controls.js
doc/slides/intro/template/tt2/index.html
doc/slides/intro/template/tt2/slide.css
doc/slides/intro/template/tt2/slide.html
doc/slides/intro/template/tt2/start.html
doc/slides/intro/template/tt2/top.html
lib/Bio/Chado/Schema.pm
lib/Bio/Chado/Schema/Result/CellLine.pod
lib/Bio/Chado/Schema/Result/CellLine/CellLine.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineCvterm.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineCvtermprop.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineDbxref.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineFeature.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineLibrary.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLinePub.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineRelationship.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineSynonym.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLineprop.pm
lib/Bio/Chado/Schema/Result/CellLine/CellLinepropPub.pm
lib/Bio/Chado/Schema/Result/Companalysis.pod
lib/Bio/Chado/Schema/Result/Companalysis/Analysis.pm
lib/Bio/Chado/Schema/Result/Companalysis/Analysisfeature.pm
lib/Bio/Chado/Schema/Result/Companalysis/Analysisfeatureprop.pm
lib/Bio/Chado/Schema/Result/Companalysis/Analysisprop.pm
lib/Bio/Chado/Schema/Result/Composite.pod
lib/Bio/Chado/Schema/Result/Composite/AllFeatureNames.pm
lib/Bio/Chado/Schema/Result/Composite/Dfeatureloc.pm
lib/Bio/Chado/Schema/Result/Composite/FLoc.pm
lib/Bio/Chado/Schema/Result/Composite/FType.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureContains.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureDifference.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureDisjoint.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureDistance.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureIntersection.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureMeets.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureMeetsOnSameStrand.pm
lib/Bio/Chado/Schema/Result/Composite/FeatureUnion.pm
lib/Bio/Chado/Schema/Result/Composite/FeaturesetMeets.pm
lib/Bio/Chado/Schema/Result/Composite/FnrType.pm
lib/Bio/Chado/Schema/Result/Composite/FpKey.pm
lib/Bio/Chado/Schema/Result/Composite/Gff3atts.pm
lib/Bio/Chado/Schema/Result/Composite/Gff3view.pm
lib/Bio/Chado/Schema/Result/Composite/Gffatts.pm
lib/Bio/Chado/Schema/Result/Contact.pod
lib/Bio/Chado/Schema/Result/Contact/Contact.pm
lib/Bio/Chado/Schema/Result/Contact/ContactRelationship.pm
lib/Bio/Chado/Schema/Result/Cv.pod
lib/Bio/Chado/Schema/Result/Cv/Chadoprop.pm
lib/Bio/Chado/Schema/Result/Cv/CommonAncestorCvterm.pm
lib/Bio/Chado/Schema/Result/Cv/CommonDescendantCvterm.pm
lib/Bio/Chado/Schema/Result/Cv/Cv.pm
lib/Bio/Chado/Schema/Result/Cv/CvCvtermCount.pm
lib/Bio/Chado/Schema/Result/Cv/CvCvtermCountWithObs.pm
lib/Bio/Chado/Schema/Result/Cv/CvLeaf.pm
lib/Bio/Chado/Schema/Result/Cv/CvLinkCount.pm
lib/Bio/Chado/Schema/Result/Cv/CvPathCount.pm
lib/Bio/Chado/Schema/Result/Cv/CvRoot.pm
lib/Bio/Chado/Schema/Result/Cv/Cvprop.pm
lib/Bio/Chado/Schema/Result/Cv/Cvterm.pm
lib/Bio/Chado/Schema/Result/Cv/CvtermDbxref.pm
lib/Bio/Chado/Schema/Result/Cv/CvtermRelationship.pm
lib/Bio/Chado/Schema/Result/Cv/Cvtermpath.pm
lib/Bio/Chado/Schema/Result/Cv/Cvtermprop.pm
lib/Bio/Chado/Schema/Result/Cv/Cvtermsynonym.pm
lib/Bio/Chado/Schema/Result/Cv/Dbxrefprop.pm
lib/Bio/Chado/Schema/Result/Cv/StatsPathsToRoot.pm
lib/Bio/Chado/Schema/Result/Expression.pod
lib/Bio/Chado/Schema/Result/Expression/Eimage.pm
lib/Bio/Chado/Schema/Result/Expression/Expression.pm
lib/Bio/Chado/Schema/Result/Expression/ExpressionCvterm.pm
lib/Bio/Chado/Schema/Result/Expression/ExpressionCvtermprop.pm
lib/Bio/Chado/Schema/Result/Expression/ExpressionImage.pm
lib/Bio/Chado/Schema/Result/Expression/ExpressionPub.pm
lib/Bio/Chado/Schema/Result/Expression/Expressionprop.pm
lib/Bio/Chado/Schema/Result/Expression/FeatureExpression.pm
lib/Bio/Chado/Schema/Result/Expression/FeatureExpressionprop.pm
lib/Bio/Chado/Schema/Result/General.pod
lib/Bio/Chado/Schema/Result/General/Db.pm
lib/Bio/Chado/Schema/Result/General/DbDbxrefCount.pm
lib/Bio/Chado/Schema/Result/General/Dbxref.pm
lib/Bio/Chado/Schema/Result/General/Tableinfo.pm
lib/Bio/Chado/Schema/Result/Genetic.pod
lib/Bio/Chado/Schema/Result/Genetic/Environment.pm
lib/Bio/Chado/Schema/Result/Genetic/EnvironmentCvterm.pm
lib/Bio/Chado/Schema/Result/Genetic/FeatureGenotype.pm
lib/Bio/Chado/Schema/Result/Genetic/Genotype.pm
lib/Bio/Chado/Schema/Result/Genetic/Genotypeprop.pm
lib/Bio/Chado/Schema/Result/Genetic/Phendesc.pm
lib/Bio/Chado/Schema/Result/Genetic/PhenotypeComparison.pm
lib/Bio/Chado/Schema/Result/Genetic/PhenotypeComparisonCvterm.pm
lib/Bio/Chado/Schema/Result/Genetic/Phenstatement.pm
lib/Bio/Chado/Schema/Result/Library.pod
lib/Bio/Chado/Schema/Result/Library/Library.pm
lib/Bio/Chado/Schema/Result/Library/LibraryCvterm.pm
lib/Bio/Chado/Schema/Result/Library/LibraryDbxref.pm
lib/Bio/Chado/Schema/Result/Library/LibraryFeature.pm
lib/Bio/Chado/Schema/Result/Library/LibraryPub.pm
lib/Bio/Chado/Schema/Result/Library/LibrarySynonym.pm
lib/Bio/Chado/Schema/Result/Library/Libraryprop.pm
lib/Bio/Chado/Schema/Result/Library/LibrarypropPub.pm
lib/Bio/Chado/Schema/Result/Mage.pod
lib/Bio/Chado/Schema/Result/Mage/Acquisition.pm
lib/Bio/Chado/Schema/Result/Mage/AcquisitionRelationship.pm
lib/Bio/Chado/Schema/Result/Mage/Acquisitionprop.pm
lib/Bio/Chado/Schema/Result/Mage/Arraydesign.pm
lib/Bio/Chado/Schema/Result/Mage/Arraydesignprop.pm
lib/Bio/Chado/Schema/Result/Mage/Assay.pm
lib/Bio/Chado/Schema/Result/Mage/AssayBiomaterial.pm
lib/Bio/Chado/Schema/Result/Mage/AssayProject.pm
lib/Bio/Chado/Schema/Result/Mage/Assayprop.pm
lib/Bio/Chado/Schema/Result/Mage/Biomaterial.pm
lib/Bio/Chado/Schema/Result/Mage/BiomaterialDbxref.pm
lib/Bio/Chado/Schema/Result/Mage/BiomaterialRelationship.pm
lib/Bio/Chado/Schema/Result/Mage/BiomaterialTreatment.pm
lib/Bio/Chado/Schema/Result/Mage/Biomaterialprop.pm
lib/Bio/Chado/Schema/Result/Mage/Channel.pm
lib/Bio/Chado/Schema/Result/Mage/Control.pm
lib/Bio/Chado/Schema/Result/Mage/Element.pm
lib/Bio/Chado/Schema/Result/Mage/ElementRelationship.pm
lib/Bio/Chado/Schema/Result/Mage/Elementresult.pm
lib/Bio/Chado/Schema/Result/Mage/ElementresultRelationship.pm
lib/Bio/Chado/Schema/Result/Mage/Magedocumentation.pm
lib/Bio/Chado/Schema/Result/Mage/Mageml.pm
lib/Bio/Chado/Schema/Result/Mage/Protocol.pm
lib/Bio/Chado/Schema/Result/Mage/Protocolparam.pm
lib/Bio/Chado/Schema/Result/Mage/Quantification.pm
lib/Bio/Chado/Schema/Result/Mage/QuantificationRelationship.pm
lib/Bio/Chado/Schema/Result/Mage/Quantificationprop.pm
lib/Bio/Chado/Schema/Result/Mage/Study.pm
lib/Bio/Chado/Schema/Result/Mage/StudyAssay.pm
lib/Bio/Chado/Schema/Result/Mage/Studydesign.pm
lib/Bio/Chado/Schema/Result/Mage/Studydesignprop.pm
lib/Bio/Chado/Schema/Result/Mage/Studyfactor.pm
lib/Bio/Chado/Schema/Result/Mage/Studyfactorvalue.pm
lib/Bio/Chado/Schema/Result/Mage/Studyprop.pm
lib/Bio/Chado/Schema/Result/Mage/StudypropFeature.pm
lib/Bio/Chado/Schema/Result/Mage/Treatment.pm
lib/Bio/Chado/Schema/Result/Map.pod
lib/Bio/Chado/Schema/Result/Map/Featuremap.pm
lib/Bio/Chado/Schema/Result/Map/FeaturemapPub.pm
lib/Bio/Chado/Schema/Result/Map/Featurepos.pm
lib/Bio/Chado/Schema/Result/Map/Featurerange.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity.pod
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperiment.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentContact.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentDbxref.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentGenotype.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentPhenotype.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentProject.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentProtocol.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentPub.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentStock.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentStockDbxref.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentStockprop.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdExperimentprop.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdGeolocation.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdGeolocationprop.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdProtocol.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdProtocolReagent.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdProtocolprop.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdReagent.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdReagentRelationship.pm
lib/Bio/Chado/Schema/Result/NaturalDiversity/NdReagentprop.pm
lib/Bio/Chado/Schema/Result/Organism.pod
lib/Bio/Chado/Schema/Result/Organism/Organism.pm
lib/Bio/Chado/Schema/Result/Organism/OrganismDbxref.pm
lib/Bio/Chado/Schema/Result/Organism/Organismprop.pm
lib/Bio/Chado/Schema/Result/Phenotype.pod
lib/Bio/Chado/Schema/Result/Phenotype/FeaturePhenotype.pm
lib/Bio/Chado/Schema/Result/Phenotype/Phenotype.pm
lib/Bio/Chado/Schema/Result/Phenotype/PhenotypeCvterm.pm
lib/Bio/Chado/Schema/Result/Phenotype/Phenotypeprop.pm
lib/Bio/Chado/Schema/Result/Phylogeny.pod
lib/Bio/Chado/Schema/Result/Phylogeny/Phylonode.pm
lib/Bio/Chado/Schema/Result/Phylogeny/PhylonodeDbxref.pm
lib/Bio/Chado/Schema/Result/Phylogeny/PhylonodeOrganism.pm
lib/Bio/Chado/Schema/Result/Phylogeny/PhylonodePub.pm
lib/Bio/Chado/Schema/Result/Phylogeny/PhylonodeRelationship.pm
lib/Bio/Chado/Schema/Result/Phylogeny/Phylonodeprop.pm
lib/Bio/Chado/Schema/Result/Phylogeny/Phylotree.pm
lib/Bio/Chado/Schema/Result/Phylogeny/PhylotreePub.pm
lib/Bio/Chado/Schema/Result/Project.pod
lib/Bio/Chado/Schema/Result/Project/Project.pm
lib/Bio/Chado/Schema/Result/Project/ProjectContact.pm
lib/Bio/Chado/Schema/Result/Project/ProjectPub.pm
lib/Bio/Chado/Schema/Result/Project/ProjectRelationship.pm
lib/Bio/Chado/Schema/Result/Project/Projectprop.pm
lib/Bio/Chado/Schema/Result/Pub.pod
lib/Bio/Chado/Schema/Result/Pub/Pub.pm
lib/Bio/Chado/Schema/Result/Pub/PubDbxref.pm
lib/Bio/Chado/Schema/Result/Pub/PubRelationship.pm
lib/Bio/Chado/Schema/Result/Pub/Pubauthor.pm
lib/Bio/Chado/Schema/Result/Pub/Pubprop.pm
lib/Bio/Chado/Schema/Result/Sequence.pod
lib/Bio/Chado/Schema/Result/Sequence/Cvtermsynonym.pm
lib/Bio/Chado/Schema/Result/Sequence/Feature.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureCvterm.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureCvtermDbxref.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureCvtermPub.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureCvtermprop.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureDbxref.pm
lib/Bio/Chado/Schema/Result/Sequence/FeaturePub.pm
lib/Bio/Chado/Schema/Result/Sequence/FeaturePubprop.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureRelationship.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureRelationshipPub.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureRelationshipprop.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureRelationshippropPub.pm
lib/Bio/Chado/Schema/Result/Sequence/FeatureSynonym.pm
lib/Bio/Chado/Schema/Result/Sequence/Featureloc.pm
lib/Bio/Chado/Schema/Result/Sequence/FeaturelocPub.pm
lib/Bio/Chado/Schema/Result/Sequence/Featureprop.pm
lib/Bio/Chado/Schema/Result/Sequence/FeaturepropPub.pm
lib/Bio/Chado/Schema/Result/Sequence/IntronCombinedView.pm
lib/Bio/Chado/Schema/Result/Sequence/IntronlocView.pm
lib/Bio/Chado/Schema/Result/Sequence/ProteinCodingGene.pm
lib/Bio/Chado/Schema/Result/Sequence/Synonym.pm
lib/Bio/Chado/Schema/Result/Sequence/TypeFeatureCount.pm
lib/Bio/Chado/Schema/Result/Stock.pod
lib/Bio/Chado/Schema/Result/Stock/Stock.pm
lib/Bio/Chado/Schema/Result/Stock/StockCvterm.pm
lib/Bio/Chado/Schema/Result/Stock/StockCvtermprop.pm
lib/Bio/Chado/Schema/Result/Stock/StockDbxref.pm
lib/Bio/Chado/Schema/Result/Stock/StockDbxrefprop.pm
lib/Bio/Chado/Schema/Result/Stock/StockGenotype.pm
lib/Bio/Chado/Schema/Result/Stock/StockPub.pm
lib/Bio/Chado/Schema/Result/Stock/StockRelationship.pm
lib/Bio/Chado/Schema/Result/Stock/StockRelationshipCvterm.pm
lib/Bio/Chado/Schema/Result/Stock/StockRelationshipPub.pm
lib/Bio/Chado/Schema/Result/Stock/Stockcollection.pm
lib/Bio/Chado/Schema/Result/Stock/StockcollectionStock.pm
lib/Bio/Chado/Schema/Result/Stock/Stockcollectionprop.pm
lib/Bio/Chado/Schema/Result/Stock/Stockprop.pm
lib/Bio/Chado/Schema/Result/Stock/StockpropPub.pm
lib/Bio/Chado/Schema/Test.pm
lib/Bio/Chado/Schema/Util.pm
maint/bin/update_dbic_dump.pl
t/001_basics.t
t/010_organism.t
t/Cv/010_cvterm.t
t/Phylogeny/phylonode.t
t/Sequence/010_feature.t
t/Sequence/synonym.t
t/Stock/010_stock.t
t/get_cvterm.t
t/lib/sqlite.sql
t/plugins.t
t/plugins_test/Bio/Chado/Schema/Result/MyPlugin/Foo.pm
t/release-eol.t
t/release-no-tabs.t
t/release-pod-coverage.t
t/release-pod-syntax.t
|
