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Source: libbio-db-gff-perl
Maintainer: Michael R. Crusoe <michael.crusoe@gmail.com>
Section: perl
Testsuite: autopkgtest-pkg-perl
Priority: optional
Build-Depends: debhelper-compat (= 12),
libapache-dbi-perl,
libbio-perl-perl,
libbio-db-biofetch-perl,
libcgi-pm-perl,
libtest-most-perl,
libmodule-build-perl
Build-Depends-Indep: perl
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-gff-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-db-gdd.git
Homepage: https://metacpan.org/release/Bio-DB-GFF
Package: libbio-db-gff-perl
Architecture: all
Depends: ${misc:Depends},
${perl:Depends},
libapache-dbi-perl,
libbio-perl-perl,
libbio-db-biofetch-perl,
libcgi-pm-perl
Breaks: libbio-perl-perl (<< 1.7.3)
Replaces: libbio-perl-perl (<< 1.7.3)
Description: Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database.
It supports multiple database types (ACeDB, relational), and multiple schemas
through a system of adaptors and aggregators.
.
The following operations are supported by this module:
.
- retrieving a segment of sequence based on the ID of a landmark
.
- retrieving the DNA from that segment
.
- finding all annotations that overlap with the segment
.
- finding all annotations that are completely contained within the
segment
.
- retrieving all annotations of a particular type, either within a
segment, or globally
.
- conversion from absolute to relative coordinates and back again,
using any arbitrary landmark for the relative coordinates
.
- using a sequence segment to create new segments based on relative
offsets
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