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3.01
* HTSlib 1.9 compatibility
* CentOS 7 compatible installation, courtesy of John Marshall
* BioPerl version agnostic installation process
* bugfix #75: reset versioning to avoid confusing perl runtime
* bugfix #81: install in sudo-less environments, e.g. docker containers
PR#83 - https://github.com/Ensembl/Bio-DB-HTS/pull/83, courtesy of John Marshall
* bugfix #76, #82 - memory leaks due to improper use of bcf_get_format_float/_char/_int32() buffers
PR#84 - https://github.com/Ensembl/Bio-DB-HTS/pull/84, courtesy of John Marshall
* Ignore .gzi index files and clean test output files
PR#87 - https://github.com/Ensembl/Bio-DB-HTS/pull/87, courtesy of John Marshall
* Documentation fixes
2.11
* VCF/BCF interface enhancements:
- retrieve header formatted text
- fetch all info/format fields in a row
- query arbitrary regions over tabix indexed VCF or CSI indexed BCF files
PR#68 - https://github.com/Ensembl/Bio-DB-HTS/pull/68 courtesy of John Marshall
* Refcount-based fix for index memory releasing problem
PR#71 - https://github.com/Ensembl/Bio-DB-HTS/pull/71 courtesy of Rob Aganrab
* fix minor POD issues
2.10
* Tabix changes: header represented as empty string when none is available;
querying over an unrecognised seq region returns undefined, not an iterator
* Bugfix: read SAM header when iterating over alignments, see issue #54
* Bugfix: could not handle sorting when building index for CRAM files
PR#64 - https://github.com/Ensembl/Bio-DB-HTS/pull/64, courtesy of John Marshall
* Implement filter for features of type coverage
* Minor warning, memory leak and typo fixes
PR#58 - https://github.com/Ensembl/Bio-DB-HTS/pull/58, courtesy of Keiran Raine
* Minimal support for BAM with csi index (no index generation)
2.9
PR#50 - https://github.com/Ensembl/Bio-DB-HTS/pull/50
* Guarantee resource deallocation by adding DESTROY methods to replace close methods
* add Bio::DB::HTS::VCF::HeaderPtr and Bio::DB::HTS::VCF::RowPtr packages
2.8
* Use the htslib his_remote function to determine which files are remote
* Add output filename to wget functon in install script, courtesy of Zhicheng Liu
* Use htslib v1.5 by default in install script
* Use filetest access to allow POSIX ACLs, courtesy of Can Wood
* Copyright updates
* Update TravisCI Perl test versions
2.7
* change BioPerl version required in Build.PL to be 1.6.1
2.6
* tabix index files downloaded by default to system tmp directory
* bugfix - Specify correct end when calling coverage if none specified
* Create a way to Tabix query against chr containing ':', courtesy of Keiran Raine
2.5
* added CRAM/BAM writing, courtesy of Dietmar Rieder
* CRAM read test reference embedded in CRAM file to allow test to pass when CRAM reference archive is unavailable
2.4
* github repo move to https://github.com/Ensembl/Bio-DB-HTS
* -Wformat=no removed from build options
* check results of archive fetches
2.3
* cram tests moved to the scripts directory to allow install when CRAM reference archive is unavailable
2.2
* Zip file downloads during install
* HTSlib version set to 1.3.1 or specified parameter during install
* https for remote file prefix check added, courtesy of Zhicheng-Liu
2.1
* add missing test file to manifest
2.0
* BCF addition
* Kseq addition: courtesy of Andrew Yates and Chris Fields
* Tabix bugfixes: see GitHub issue #17
* licence updated
1.13
* removed file existence Tabix check as it prevents remote access
* Tabix bugfix
* Build git clone commands use branch and depth options
1.12
* Build procedure static option added, courtesy of David Jones
* TravisCI tests added
* build_options script added to demonstrate build options
* cpanfile updates
1.11
* FAIDX memory leak fix, courtesy Andy Yates & Keiran Raine
* INSTALL.pl to local directory, courtesy Keiran Raine
* documentation updates
1.10
* Tabix header_array subroutine added
* Tabix DEMOLISH routines renamed close for consistency
1.09
* Tabix header subroutine, test added
* README clarifications
* prompt removed from install script
1.08
* Added missing test files
1.07
* Build.PL updated, courtesy of James Gilbert.
* TABIX bindings added, courtesy of Alex Hodgkins, Congenica Ltd.
1.06
* htslib directory parameter added for perl Build.PL
* faidx include directory bug fix added
1.05
* CRAM tests added
* cpanfile added
1.04
* FAIDX added
1.03
* license field corrected in Build.PL
* Version numbers added to PM files
* Alien::HTSlib module referred to
1.02
* Version numbers added to PM files
1.01
* Package renaming
1.00
* First full release of htslib port from Bio::DB::Sam
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