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Source: libbio-db-hts-perl
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Testsuite: autopkgtest-pkg-perl
Priority: optional
Build-Depends: debhelper-compat (= 13),
libbio-perl-perl,
libextutils-cbuilder-perl,
libextutils-pkgconfig-perl,
libhts-dev,
libmodule-build-perl,
perl
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-hts-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-db-hts-perl.git
Homepage: https://metacpan.org/release/Bio-DB-HTS
Rules-Requires-Root: no
Package: libbio-db-hts-perl
Architecture: any
Depends: ${perl:Depends},
${shlibs:Depends},
${misc:Depends},
libbio-perl-perl
Description: Perl interface to the HTS library
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
'csi' (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package provides a Perl interface to the HTS library.
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