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Source: libbio-featureio-perl
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>
Section: science
Testsuite: autopkgtest-pkg-perl
Priority: optional
Build-Depends: debhelper-compat (= 12)
Build-Depends-Indep: libbio-perl-perl,
libscalar-list-utils-perl,
libtest-simple-perl,
libtest-most-perl,
libtree-dagnode-perl,
liburi-perl,
libxml-dom-perl,
libxml-dom-xpath-perl,
perl
Standards-Version: 4.4.1
Homepage: https://metacpan.org/release/Bio-FeatureIO
Vcs-Browser: https://salsa.debian.org/med-team/libbio-featureio-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-featureio-perl.git
Package: libbio-featureio-perl
Architecture: all
Section: perl
Depends: ${misc:Depends},
${perl:Depends},
libbio-perl-perl,
libscalar-list-utils-perl,
libtree-dagnode-perl,
liburi-perl,
libxml-dom-perl,
libxml-dom-xpath-perl
Description: Modules for reading, writing, and manipulating sequence features
An I/O iterator subsystem for genomic sequence features.
.
Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg,
Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the
format objects, which most people should use.
.
The Bio::FeatureIO system can be thought of like biological file handles.
They are attached to filehandles with smart formatting rules (eg, GFF format,
or BED format) and can either read or write feature objects (Bio::SeqFeature
objects, or more correctly, Bio::FeatureHolderI implementing objects, of
which Bio::SeqFeature is one such object). If you want to know what to do
with a Bio::SeqFeatureI object, read Bio::SeqFeatureI.
.
The idea is that you request a stream object for a particular format. All the
stream objects have a notion of an internal file that is read from or written
to. A particular FeatureIO object instance is configured for either input or
output. A specific example of a stream object is the Bio::FeatureIO::gff
object.
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