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libbio-samtools-perl (1.20-1) unstable; urgency=low
* New upstream release.
* Incremented Standards-Version to reflect conformance with Policy 3.9.0
(debian/control, no changes needed).
-- Charles Plessy <plessy@debian.org> Sat, 17 Jul 2010 10:44:34 +0900
libbio-samtools-perl (1.19-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Mon, 24 May 2010 16:25:08 +0900
libbio-samtools-perl (1.14-1) unstable; urgency=low
* New upstream release with a new script, bamToGBrowse.pl.
* Depend and Build-Depend on bioperl >= 1.6 (debian/control).
* t/data/ex1.bam.bai and t/data/ex1.fa.fai are now part of the
upstream source, so we do not delete them any more in the
clean target of debian/rules.
-- Charles Plessy <plessy@debian.org> Tue, 06 Apr 2010 13:41:17 +0900
libbio-samtools-perl (1.12-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Fri, 19 Mar 2010 22:46:54 +0900
libbio-samtools-perl (1.11-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Sat, 06 Mar 2010 20:29:02 +0900
libbio-samtools-perl (1.10-1) unstable; urgency=low
* New Upstream version.
* Incremented Standards-Version to reflect conformance with Policy 3.8.4
(debian/control, no changes needed).
-- Charles Plessy <plessy@debian.org> Thu, 11 Feb 2010 23:21:58 +0900
libbio-samtools-perl (1.09-1) unstable; urgency=low
* New Upstream Versions adding support for remote access to BAM
databases on http/ftp servers.
-- Charles Plessy <plessy@debian.org> Fri, 11 Dec 2009 22:53:34 +0900
libbio-samtools-perl (1.07-1) unstable; urgency=low
* New upstream release.
- IMPORTANT API CHANGE 1: The feature strand now returns +1 or -1 to
indicate whether the query was reverse complemented in the SAM file.
- IMPORTANT API CHANGE 2: The $feature->query object's dna() and seq()
methods now return the sequence as it was read, rather than the reverse
complemented version as represented in the SAM file. $feature->qseq()
returns the reverse complemented version as before.
* Removed mention that libbio-samtools-perl is built against a static
library since it was agree with the release team that the package
can enter in Testing.
-- Charles Plessy <plessy@debian.org> Mon, 23 Nov 2009 17:20:21 +0900
libbio-samtools-perl (1.06-1) unstable; urgency=low
* New Upstream Version (Bio::DB::Sam modified to work with GBrowse 1).
* Added a few informations about upstream in debian/upstream-metadata.yaml.
* Documented how I test the package in README.Debian.
-- Charles Plessy <plessy@debian.org> Sun, 08 Nov 2009 11:43:43 +0900
libbio-samtools-perl (1.05-1) unstable; urgency=low
* New upstream release.
- Bio::DB::Sam->seq_id() method no longer lower-cases reference names.
- Quashed enormous memory leak in the pileup() function.
-- Charles Plessy <plessy@debian.org> Mon, 28 Sep 2009 12:58:26 +0900
libbio-samtools-perl (1.04-1) unstable; urgency=low
* Initial Release (Closes: #543487).
-- Charles Plessy <plessy@debian.org> Tue, 15 Sep 2009 18:55:53 +0900
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