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Source: libbio-samtools-perl
Maintainer: Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Nathan Handler <nhandler@debian.org>
Section: perl
Priority: optional
Build-Depends: debhelper (>= 9.20120312~),
perl,
libmodule-build-perl,
zlib1g-dev,
libbam-dev (>= 0.1.16-1~),
# needed for the tests:
libbio-perl-perl
Standards-Version: 3.9.6
Vcs-Browser: https://anonscm.debian.org/cgit/pkg-perl/packages/libbio-samtools-perl.git
Vcs-Git: https://anonscm.debian.org/git/pkg-perl/packages/libbio-samtools-perl.git
Homepage: https://metacpan.org/release/Bio-SamTools
Testsuite: autopkgtest-pkg-perl
Package: libbio-samtools-perl
Architecture: any
Depends: ${perl:Depends},
${shlibs:Depends},
${misc:Depends},
libbio-perl-perl
Enhances: gbrowse,
samtools
Description: Perl interface to SamTools library for DNA sequencing
Bio::SamTools provides a Perl interface to the libbam library for indexed and
unindexed SAM/BAM sequence alignment databases. It provides support for
retrieving information on individual alignments, read pairs, and alignment
coverage information across large regions. It also provides callback
functionality for calling SNPs and performing other base-by-base functions.
Most operations are compatible with the BioPerl Bio::SeqFeatureI interface,
allowing BAM files to be used as a backend to the GBrowse genome browser
application.
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