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# -*-Perl-*- Test Harness script for Bioperl
# $Id$
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 14);
use_ok('Bio::Variation::Allele');
}
my($a,$trunc,$rev);
$a = Bio::Variation::Allele->new(-seq=>'ACTGACTGACTG',
-display_id => 'new-id',
-alphabet => 'dna',
-accession_number => 'X677667',
-desc=>'Sample Bio::Seq object');
isa_ok($a, 'Bio::Variation::Allele');
is $a->accession_number(), 'X677667';
is $a->seq(), 'ACTGACTGACTG';
is $a->display_id(),'new-id' ;
is $a->desc, 'Sample Bio::Seq object';
is $a->alphabet(), 'dna';
ok defined($trunc = $a->trunc(1,4));
is $trunc->seq(), 'ACTG';
ok defined($rev = $a->revcom());
is $rev->seq(), 'CAGTCAGTCAGT';
$a->is_reference(1);
ok $a->is_reference;
$a->repeat_unit('ACTG');
is $a->repeat_unit, 'ACTG';
$a->repeat_count(3);
is $a->repeat_count, 3;
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